View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18982_high_69 (Length: 287)
Name: NF18982_high_69
Description: NF18982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18982_high_69 |
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Alignment Details
Target: chr4 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 13 - 270
Target Start/End: Original strand, 47900261 - 47900518
Alignment:
| Q |
13 |
aatatacagatcagaaaactctaacacaacaaaatctacacagtttgaaacaaaagctgcaacagatccaaaacacaaggaagtgtgattaaagtacctt |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
47900261 |
aatatacagatcagaaaactctaacacaacaaaatctacacagtttaaaacaaaagctgcaacagatccaaaacagaaggaagtgtgattaaagtacctt |
47900360 |
T |
|
| Q |
113 |
gtattcatcaccgaattcaatttgaaaagcatcacgaatagcctcagcagaagctctatgtccaccaccagtatcactcatgagaatcaacacatttttt |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47900361 |
gtattcatcaccgaattcaatttgaaaagcatcacgaatagcctcagcagaagctctatgtccaccaccagtatcactcatgagaatcaacacatttttt |
47900460 |
T |
|
| Q |
213 |
gttctttctgctccaatttccatgagttccatgccaacttcattatcttcattgatag |
270 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
47900461 |
gttctttctgctccaatttccatgagttccatgccaccttcattatcttcattgatag |
47900518 |
T |
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