View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18982_high_7 (Length: 631)
Name: NF18982_high_7
Description: NF18982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18982_high_7 |
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| [»] scaffold0244 (1 HSPs) |
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| [»] scaffold0171 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 545; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 545; E-Value: 0
Query Start/End: Original strand, 17 - 620
Target Start/End: Complemental strand, 2332782 - 2332181
Alignment:
| Q |
17 |
aatctcttgagcaataattgtgttatcagaagcacctctattaggaatgaaagagctgtgaagaggaccaataaaatcatccaagaaaggtctgatgata |
116 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2332782 |
aatctcttgagcaataattgtgttatcagaagtacctctattgggaatgaaagagctgtgaagaggaccaataaaatcatccaagaaaggtctgatgata |
2332683 |
T |
|
| Q |
117 |
cgtctaactataacttttgaaattgtctttaaaagcacgttgcataagctgataggacgaaactctttgaaactcttggcgatatcaattttcgggatga |
216 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| |||||| |
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| T |
2332682 |
cgtctaactagaacttttgaaattgtctttaaaagcacgttgcataagccgataggacgaaactctttgaaactcttggcaatatcaattttcaggatga |
2332583 |
T |
|
| Q |
217 |
gaacaaccaaggtctctacaagagtatgatcaataacgccggaagaaaaagcaccaaacaggcagacaccatttcccatacatcatgcccaacaatatgc |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2332582 |
gaacaaccaaggtctctacaagagtatgatcaataacgccggaagaaaaagcaccaaacaggcagacaccatttcccatacatcatgcccaacaatatgc |
2332483 |
T |
|
| Q |
317 |
caacaaattttgtaaaatatcggttgaaatccatcatgtcctagggctttgtaagagtgcatagggaaaatagaatctttaatcctttccatagttacag |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
2332482 |
caacaaattttgtaaaatatcggttgaaatccatcatgtcctagggctttgtaagagtgcatagggaaaatagaatctttaatcctttccatagtgacag |
2332383 |
T |
|
| Q |
417 |
gcaagagaagctggtccatcaagttaatgctaagagatggaatattatccagttgtaaactatatgagaggtttacagggatcatttgattggaatagat |
516 |
Q |
| |
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||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
2332382 |
gcaagagaagctggtccatcaagctaatgccaagagatggaatattatccagttgtaaactatatgagaggtttacagggatcatttgattgggatagat |
2332283 |
T |
|
| Q |
517 |
tcataaaaaactttgaggcttcccttttgagagtgcttgcattcgtgcaccatatgttttccacattcaaaccagaaattttatttcgtcgtcttctgat |
616 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
2332282 |
gcataaaaaactttgaggcttcccttttgagagtgcttgcattcgtgcacc--atgttttccacattcaaaccagaaattttatttcgccgtcttctgat |
2332185 |
T |
|
| Q |
617 |
gatg |
620 |
Q |
| |
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|||| |
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| T |
2332184 |
gatg |
2332181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0244 (Bit Score: 82; Significance: 2e-38; HSPs: 1)
Name: scaffold0244
Description:
Target: scaffold0244; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 16 - 396
Target Start/End: Original strand, 16235 - 16604
Alignment:
| Q |
16 |
caatctcttgagcaataattgtgttatcagaagcacctctattaggaatgaaagagctgtgaagaggaccaataaaatcatccaagaaaggtctgatgat |
115 |
Q |
| |
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|||| ||||||| |||||| ||||||||||| ||||||||| |||| ||| |||| |||||||| |||||||||||||||||||||||||| || |
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| T |
16235 |
caatttcttgagtaataatgacgttatcagaagtacctctattcagaataaaatagctttgaagagggccaataaaatcatccaagaaaggtctaat--- |
16331 |
T |
|
| Q |
116 |
acgtctaactataacttttgaaattgtctttaaaagcacgttgcataagctgataggacgaaactctttgaaactcttggcgatatcaattttcgggatg |
215 |
Q |
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||| ||||||| ||||| ||||| ||||| |||||||| ||||||||||||||||||| ||| ||| ||||||| | || |||||||||||| || || |
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| T |
16332 |
acgcctaactagtactttggaaatagtcttcaaaagcacattgcataagctgataggacaaaaatctgtgaaactttgggggatatcaatttttggaata |
16431 |
T |
|
| Q |
216 |
agaacaaccaaggtctctacaagagtatgatcaataacgccggaagaaaaagcaccaaacaggcagacaccatttcccatacatcatgcccaacaatatg |
315 |
Q |
| |
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|||||| |||||||| | ||| |||| ||||||| | || | | ||||||| || ||||||||| ||| ||||||| ||||||| |||| |
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| T |
16432 |
ggaacaatcaaggtctatgcaatagtaggatcaatgataccataggcaaaagca--------tcatacaccattttccagacatcatccccaacactatg |
16523 |
T |
|
| Q |
316 |
ccaacaaattttgtaaaatatcggttgaaatccatcatgtcctagggctttgtaagagtgcatagggaaaatagaatcttt |
396 |
Q |
| |
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|||| || |||| |||| || |||||||| ||||| | || ||||||||||| ||||||| | |||||||| |||||| |
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| T |
16524 |
ccaataagctttgaaaaaaataggttgaaaaccatctggacccggggctttgtaaaagtgcattgagaaaatagcatcttt |
16604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 82; Significance: 2e-38; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 16 - 396
Target Start/End: Original strand, 1261552 - 1261909
Alignment:
| Q |
16 |
caatctcttgagcaataattgtgttatcagaagcacctctattaggaatgaaagagctgtgaagaggaccaataaaatcatccaagaaaggtctgatgat |
115 |
Q |
| |
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|||| |||||||||||||| | ||||||||||| ||||||||| ||||| |||||||| |||||||| |||||||||||| || || |
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| T |
1261552 |
caatttcttgagcaataatggcgttatcagaagtacctctatttggaataaaagagctttgaagagggccaataaaatca---------------ataat |
1261636 |
T |
|
| Q |
116 |
acgtctaactataacttttgaaattgtctttaaaagcacgttgcataagctgataggacgaaactctttgaaactcttggcgatatcaattttcgggatg |
215 |
Q |
| |
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||| ||||||| ||||| ||||| ||||| |||||||| ||||||||||||||||||||||| ||| ||||||| | || |||||||||||| || || |
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| T |
1261637 |
acgcctaactagtactttggaaatagtcttcaaaagcacattgcataagctgataggacgaaaatctgtgaaactttgggggatatcaatttttggaata |
1261736 |
T |
|
| Q |
216 |
agaacaaccaaggtctctacaagagtatgatcaataacgccggaagaaaaagcaccaaacaggcagacaccatttcccatacatcatgcccaacaatatg |
315 |
Q |
| |
|
|||||| |||||||||| ||| |||| ||||||| | || | | ||||||| || ||||||||| ||| ||||||| |||||||||||| |
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| T |
1261737 |
ggaacaatcaaggtctctgcaatagtaggatcaatgataccataggcaaaagca--------tcatacaccattttccacacatcatccccaacaatatg |
1261828 |
T |
|
| Q |
316 |
ccaacaaattttgtaaaatatcggttgaaatccatcatgtcctagggctttgtaagagtgcatagggaaaatagaatcttt |
396 |
Q |
| |
|
|||| || ||||| |||| || |||||||| ||||| | || ||||||||||||||||||| | |||||||| |||||| |
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|
| T |
1261829 |
ccaataagttttgaaaaaaataggttgaaaaccatctggacccggggctttgtaagagtgcattgagaaaatagcatcttt |
1261909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0171 (Bit Score: 73; Significance: 5e-33; HSPs: 1)
Name: scaffold0171
Description:
Target: scaffold0171; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 18 - 276
Target Start/End: Original strand, 684 - 939
Alignment:
| Q |
18 |
atctcttgagcaataattgtgttatcagaagcacctctattaggaatgaaagagctgtgaagaggaccaataaaatcatccaagaaaggtctgatgatac |
117 |
Q |
| |
|
|||||||| ||||| || ||||||||||||| |||||||||||||||||||||| | || ||||| |||||||||||||||||||||||| |||||| |
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| T |
684 |
atctcttgtgcaatgatggtgttatcagaagtacctctattaggaatgaaagagttttggagagggccaataaaatcatccaagaaaggt---ttgatac |
780 |
T |
|
| Q |
118 |
gtctaactataacttttgaaattgtctttaaaagcacgttgcataagctgataggacgaaactctttgaaactcttggcgatatcaattttcgggatgag |
217 |
Q |
| |
|
||| || | |||||| ||||| ||||||| |||||| || ||| |||||||||||||| |||||||||| | | ||||||||| || || || |
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| T |
781 |
atctcacaagaactttggaaatggtctttagaagcacattatatagactgataggacgaaaatctttgaaacattgagggatatcaatctttggaattga |
880 |
T |
|
| Q |
218 |
aacaaccaaggtctctacaagagtatgatcaataacgccggaagaaaaagcaccaaaca |
276 |
Q |
| |
|
|| || || ||||||||||||| || |||||||| || |||||||||||| |||||| |
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|
| T |
881 |
aataatcagggtctctacaagattaggatcaatacaaccagaagaaaaagcatcaaaca |
939 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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