View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18982_high_70 (Length: 285)

Name: NF18982_high_70
Description: NF18982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18982_high_70
NF18982_high_70
[»] chr8 (2 HSPs)
chr8 (189-268)||(11338326-11338405)
chr8 (10-124)||(11338162-11338261)
[»] chr7 (1 HSPs)
chr7 (88-124)||(24022791-24022827)


Alignment Details
Target: chr8 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 189 - 268
Target Start/End: Original strand, 11338326 - 11338405
Alignment:
Q  189 gtatcaattgaaaatagtaaaaaggaacttacttccaacaagttgaagtcaaattttcgacataagagaatcgacatagt 268  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11338326 gtatcaattgaaaatagtaaaaaggaacttacttccaacaagttgaagtcaaattttcgacataagagaatcgacatagt 11338405  T

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Target: chr8; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 10 - 124
Target Start/End: Original strand, 11338162 - 11338261
Alignment:
Q  10 catcatcagtcttcaaaaggcttcttccactccacattcaagtaactctctaatttcatttagtccaatttcacttcgagacctataattcaaaaatatc 109  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||               ||||||||||||||||||||||||||||||||||    
T  11338162 catcatcagtcttcagaaggcttcttccactccacattcaagtaactctct---------------aatttcacttcgagacctataattcaaaaatatc 11338246  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 88 - 124
Target Start/End: Complemental strand, 24022827 - 24022791
Alignment:
Q  88 agacctataattcaaaaatatccataagactagaagt 124  Q
    ||||||||||||||||||||||||| || ||||||||    
T  24022827 agacctataattcaaaaatatccattagtctagaagt 24022791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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