View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18982_high_71 (Length: 282)
Name: NF18982_high_71
Description: NF18982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18982_high_71 |
 | |
|
| [»] scaffold0416 (1 HSPs) |
| | |
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| [»] scaffold0112 (4 HSPs) |
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| [»] scaffold0759 (1 HSPs) |
| | |
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| [»] scaffold0233 (1 HSPs) |
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| [»] scaffold0093 (1 HSPs) |
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Alignment Details
Target: scaffold0416 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: scaffold0416
Description:
Target: scaffold0416; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 13 - 257
Target Start/End: Complemental strand, 7638 - 7395
Alignment:
| Q |
13 |
aatattcttaattaatgaaaaattagtatactacatgctcaatttaataccaaacattcctaaatatatacgttatatgcatagat--gtgtattggttc |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
7638 |
aatattcttaattaatgaaaaattagtatactacatgctcaatttaataccaaacattcctaaatatatacgttatatgcatagatatgtgtattggttc |
7539 |
T |
|
| Q |
111 |
caactttaacttcctttgccatttgcagtaattgtccagattaagaacgttgaagcagggcaatgtgcaagagtcggtatgcgttgttcacgggcattgc |
210 |
Q |
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|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7538 |
caactttaacttcctttaccatttgcagtaattgtccagattaagaacgttgaagcagggcaatgtgcaagagtcggtatgcgttgttcacgggcattgc |
7439 |
T |
|
| Q |
211 |
cgaatccatgcggcggcgacatcataacgtgtcgttgtgtccgtttg |
257 |
Q |
| |
|
||||||||||| ||||||||| |||||||||||||||||| |||| |
|
|
| T |
7438 |
cgaatccatgc---ggcgacatcgtaacgtgtcgttgtgtccatttg |
7395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0112 (Bit Score: 158; Significance: 4e-84; HSPs: 4)
Name: scaffold0112
Description:
Target: scaffold0112; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 32 - 251
Target Start/End: Complemental strand, 41243 - 41027
Alignment:
| Q |
32 |
aaattagtatactacatgctcaatttaataccaaacattcctaaatatatacgttatatgcatagatgtgtattggttccaactttaacttcctttgcca |
131 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
41243 |
aaattaatatactacatgctcaatttaataccaaactttcctaaatatatacgttatatgcatagatgtgtattggtttcaactttaacttcctttgcca |
41144 |
T |
|
| Q |
132 |
tttgcagtaattgtccagattaagaacgttgaagcagggcaatgtgcaagagtcggtatgcgttgttcacgggcattgccgaatccatgcggcggcgaca |
231 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| ||| |||||||||| ||||||| |
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|
| T |
41143 |
tttgcagtaattgttcagattaagaacgttgaagcagggcaatgtgcaaaagtcggtatggcttgttcacgggatttgtggaatccatgc---ggcgaca |
41047 |
T |
|
| Q |
232 |
tcataacgtgtcgttgtgtc |
251 |
Q |
| |
|
||| |||||||||||||||| |
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|
| T |
41046 |
tcacaacgtgtcgttgtgtc |
41027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0112; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 13 - 200
Target Start/End: Complemental strand, 26116 - 25932
Alignment:
| Q |
13 |
aatattcttaattaatgaaaaattagtatactacatgctcaatttaataccaaacattcctaaatatatacgttatatgcatagatgtgtattggttcca |
112 |
Q |
| |
|
|||||||||| ||||||||||||| || || |||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
26116 |
aatattcttatttaatgaaaaattggtttagtacatgcttaatttaataccaaacattcctaaatatgtacgttatatgcatagatgtgtattggttcca |
26017 |
T |
|
| Q |
113 |
actttaacttcctttgccatttgcagtaattgtccagattaagaacgttgaagcagggcaatgtgcaagagtcggtatgcgttgttca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||| ||||||||||||||| | ||||||||| |||||||||||||||| |
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|
| T |
26016 |
actttaacttcctttgccatttgcagtaatcatccagacgaagaacgttgaagca---tattgtgcaagatacggtatgcgttgttca |
25932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0112; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 67
Target Start/End: Complemental strand, 17388 - 17339
Alignment:
| Q |
18 |
tcttaattaatgaaaaattagtatactacatgctcaatttaataccaaac |
67 |
Q |
| |
|
||||||| |||||||||||| ||||| |||||||||||||||| |||||| |
|
|
| T |
17388 |
tcttaatcaatgaaaaattattatacaacatgctcaatttaatgccaaac |
17339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0112; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 168
Target Start/End: Complemental strand, 17337 - 17284
Alignment:
| Q |
115 |
tttaacttcctttgccatttgcagtaattgtccagattaagaacgttgaagcag |
168 |
Q |
| |
|
|||||||||||||||| ||||||||||| | |||| |||||||||||||||| |
|
|
| T |
17337 |
tttaacttcctttgccctttgcagtaatcattcagacgaagaacgttgaagcag |
17284 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0759 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: scaffold0759
Description:
Target: scaffold0759; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 13 - 182
Target Start/End: Original strand, 2175 - 2344
Alignment:
| Q |
13 |
aatattcttaattaatgaaaaattagtatactacatgctcaatttaataccaaacattcctaaatatatacgttatatgcatagatgtgtattggttcca |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
2175 |
aatattcttaattaatgaaaaattagtatactacatgctcaatttaataccaaacattcctaaatatatacgttatatgcatagatgtgtatcggttcca |
2274 |
T |
|
| Q |
113 |
actttaacttcctttgccatttgcagtaattgtccagattaagaacgttgaagcagggcaatgtgcaaga |
182 |
Q |
| |
|
||||||||||||||||||||||| |||||| |||||| ||||||||||||||| |||| ||||||||| |
|
|
| T |
2275 |
actttaacttcctttgccatttgtagtaatcatccagacgaagaacgttgaagcaaggcattgtgcaaga |
2344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 128; Significance: 3e-66; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 13 - 176
Target Start/End: Complemental strand, 26777920 - 26777757
Alignment:
| Q |
13 |
aatattcttaattaatgaaaaattagtatactacatgctcaatttaataccaaacattcctaaatatatacgttatatgcatagatgtgtattggttcca |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
26777920 |
aatattcttaattaatgaaaaattagtatactacattctcaatttaataccaaactctcctaaatatatacgttatatgcatagatgtgtattggtttca |
26777821 |
T |
|
| Q |
113 |
actttaacttcctttgccatttgcagtaattgtccagattaagaacgttgaagcagggcaatgt |
176 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||| |||||||| ||||||||| ||||| |
|
|
| T |
26777820 |
actttaacttcctttgccatttgcagtaatcgtccagacgaagaacgtagaagcagggaaatgt |
26777757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 30 - 172
Target Start/End: Original strand, 26834603 - 26834745
Alignment:
| Q |
30 |
aaaaattagtatactacatgctcaatttaataccaaacattcctaaatatatacgttatatgcatagatgtgtattggttccaactttaacttcctttgc |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
26834603 |
aaaaattagtatactacatgctcaatttaataccaaactttcctaaatatatacgttatatgcatagatgtgtattggttccaactttaactttctttgc |
26834702 |
T |
|
| Q |
130 |
catttgcagtaattgtccagattaagaacgttgaagcagggca |
172 |
Q |
| |
|
||||||||||||| ||||||| ||||||||||||| |||||| |
|
|
| T |
26834703 |
catttgcagtaatcgtccagacgaagaacgttgaagaagggca |
26834745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 13 - 182
Target Start/End: Original strand, 26791986 - 26792161
Alignment:
| Q |
13 |
aatattcttaattaatgaaaaattagtatactacatgctcaatttaataccaaacattcctaaatatatacgttatatgcatag--atgtgtattggttc |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
26791986 |
aatattcttaattaatgaaaaattagtatactacatgctcaatttaataccaaactttcctaaatatatacgttatatgcatagatatgtgtattggttc |
26792085 |
T |
|
| Q |
111 |
caactttaacttcctttgccatttgcagtaattgtc----cagattaagaacgttgaagcagggcaatgtgcaaga |
182 |
Q |
| |
|
||||||||| |||||||||||||||||||||| || |||| ||||||||||||||| |||| ||||||||| |
|
|
| T |
26792086 |
caactttaatttcctttgccatttgcagtaatcatccagacagacgaagaacgttgaagcaaggcattgtgcaaga |
26792161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 20 - 176
Target Start/End: Original strand, 26729400 - 26729557
Alignment:
| Q |
20 |
ttaattaatgaaaaattagtatactacatgctcaatttaataccaaacattcctaaatatatacgttatatgcatagatgtgta-ttggttccaacttta |
118 |
Q |
| |
|
||||| |||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| | |||||||||| |||||||| |||||||||| |||| |
|
|
| T |
26729400 |
ttaatcaatgaaaaattaatatactacatgctcaatttaataccaaactttcctaaatatatgctttatatgcatggatgtgtatttggttccaatttta |
26729499 |
T |
|
| Q |
119 |
acttcctttgccatttgcagtaattgtccagattaagaacgttgaagcagggcaatgt |
176 |
Q |
| |
|
| |||||||| ||||||||||||| ||||||| |||||||||||||| ||| ||||| |
|
|
| T |
26729500 |
atttcctttgtcatttgcagtaatcgtccagacgaagaacgttgaagctggggaatgt |
26729557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 115 - 176
Target Start/End: Original strand, 26745629 - 26745690
Alignment:
| Q |
115 |
tttaacttcctttgccatttgcagtaattgtccagattaagaacgttgaagcagggcaatgt |
176 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||||||| ||||||||| |||||||||||||| |
|
|
| T |
26745629 |
tttaacttcctttgccctttgcagtaatcgtccagacgaagaacgttcaagcagggcaatgt |
26745690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 67
Target Start/End: Original strand, 26745578 - 26745627
Alignment:
| Q |
18 |
tcttaattaatgaaaaattagtatactacatgctcaatttaataccaaac |
67 |
Q |
| |
|
||||||| |||||||||||| |||||||||||||||||||||| |||||| |
|
|
| T |
26745578 |
tcttaatcaatgaaaaattattatactacatgctcaatttaatgccaaac |
26745627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0233 (Bit Score: 108; Significance: 3e-54; HSPs: 1)
Name: scaffold0233
Description:
Target: scaffold0233; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 13 - 128
Target Start/End: Original strand, 17576 - 17691
Alignment:
| Q |
13 |
aatattcttaattaatgaaaaattagtatactacatgctcaatttaataccaaacattcctaaatatatacgttatatgcatagatgtgtattggttcca |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
17576 |
aatattcttaattaatgaaaaattagtatactacatgctcaatttaataccaaactttcctaaatatatacgttatatgcatagatgtgtattgattcca |
17675 |
T |
|
| Q |
113 |
actttaacttcctttg |
128 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
17676 |
actttaacttcctttg |
17691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0093 (Bit Score: 101; Significance: 4e-50; HSPs: 1)
Name: scaffold0093
Description:
Target: scaffold0093; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 27 - 167
Target Start/End: Original strand, 20949 - 21089
Alignment:
| Q |
27 |
atgaaaaattagtatactacatgctcaatttaataccaaacattcctaaatatatacgttatatgcatagatgtgtattggttccaactttaacttcctt |
126 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |
|
|
| T |
20949 |
atgaaaaattagtatactacatgctcaatttaataccaaactttcctaaatatatacgttatatgcatagatatgtattggttccaactttaactttctt |
21048 |
T |
|
| Q |
127 |
tgccatttgcagtaattgtccagattaagaacgttgaagca |
167 |
Q |
| |
|
||| |||||||||||| ||| ||| | |||| |||||||| |
|
|
| T |
21049 |
tgcaatttgcagtaatcgtcgagacgatgaacattgaagca |
21089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 86; Significance: 4e-41; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 77 - 182
Target Start/End: Complemental strand, 13042176 - 13042071
Alignment:
| Q |
77 |
tatatacgttatatgcatagatgtgtattggttccaactttaacttcctttgccatttgcagtaattgtccagattaagaacgttgaagcagggcaatgt |
176 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |||| ||| |
|
|
| T |
13042176 |
tatataggttatatgcatagatgtgtattggttccaactttaacttcctttgccatttgcagtaatcgtccagatgaagaacgttgaagcaaggcattgt |
13042077 |
T |
|
| Q |
177 |
gcaaga |
182 |
Q |
| |
|
|||||| |
|
|
| T |
13042076 |
gcaaga |
13042071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 77 - 182
Target Start/End: Complemental strand, 13050253 - 13050148
Alignment:
| Q |
77 |
tatatacgttatatgcatagatgtgtattggttccaactttaacttcctttgccatttgcagtaattgtccagattaagaacgttgaagcagggcaatgt |
176 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |||| ||| |
|
|
| T |
13050253 |
tatataggttatatgcatagatgtgtattggttccaactttaacttcctttgccatttgcagtaatcgtccagatgaagaacgttgaagcaaggcattgt |
13050154 |
T |
|
| Q |
177 |
gcaaga |
182 |
Q |
| |
|
|||||| |
|
|
| T |
13050153 |
gcaaga |
13050148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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