View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18982_high_73 (Length: 275)

Name: NF18982_high_73
Description: NF18982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18982_high_73
NF18982_high_73
[»] chr7 (15 HSPs)
chr7 (19-262)||(29275317-29275560)
chr7 (146-253)||(29279159-29279266)
chr7 (146-254)||(29269758-29269866)
chr7 (19-126)||(28612160-28612267)
chr7 (22-131)||(29270587-29270696)
chr7 (42-131)||(29288411-29288500)
chr7 (142-208)||(28612975-28613041)
chr7 (42-131)||(29282972-29283061)
chr7 (148-216)||(28621251-28621319)
chr7 (142-216)||(28614653-28614726)
chr7 (42-102)||(28623328-28623388)
chr7 (146-255)||(29282136-29282245)
chr7 (146-216)||(29287629-29287699)
chr7 (175-239)||(29286976-29287040)
chr7 (49-126)||(28615439-28615516)
[»] chr1 (3 HSPs)
chr1 (146-216)||(49149566-49149636)
chr1 (146-238)||(4235404-4235496)
chr1 (142-238)||(49144997-49145093)


Alignment Details
Target: chr7 (Bit Score: 216; Significance: 1e-119; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 19 - 262
Target Start/End: Complemental strand, 29275560 - 29275317
Alignment:
Q  19 tggcacagaaattgaatcgctagttccaacaaataaaatgttgttttccaaactctcaagtttgttgatttgttcaacttttccgctctgggcgtccagt 118  Q
    ||||||||||||| ||| || |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  29275560 tggcacagaaattaaattgccagttccaacaaataaaatgttgctttccaaactctcaagtttgttgatttgttcaactttttcgctctgggcgtccagt 29275461  T
Q  119 tccaatttcaaaagaaaccaagtcaagtcttgcacaccacacgaaacctaacatgatctatgtgttcttccaacttatcaagaaccaaactaagaggaga 218  Q
    |||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29275460 tccaatttgaaaagaaaccaagtcaagtcttgcacactacacgaaacctaacatgatctatgtgttcttccaacttatcaagaaccaaactaagaggaga 29275361  T
Q  219 ggattctaaattttcccaatcaaccttcctcattgctgataagt 262  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  29275360 ggattctaaattttcccaatcaaccttcctcattgctgataagt 29275317  T

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Target: chr7; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 146 - 253
Target Start/End: Complemental strand, 29279266 - 29279159
Alignment:
Q  146 tcttgcacaccacacgaaacctaacatgatctatgtgttcttccaacttatcaagaaccaaactaagaggagaggattctaaattttcccaatcaacctt 245  Q
    |||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||| | | ||||||||||||||||||||||||    
T  29279266 tcttacacaccacaccaaacctaacatgatctatgtgttcttccaacttatcaagaacaaaactaagaggatatgcttctaaattttcccaatcaacctt 29279167  T
Q  246 cctcattg 253  Q
    ||||||||    
T  29279166 cctcattg 29279159  T

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Target: chr7; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 146 - 254
Target Start/End: Complemental strand, 29269866 - 29269758
Alignment:
Q  146 tcttgcacaccacacgaaacctaacatgatctatgtgttcttccaacttatcaagaaccaaactaagaggagaggattctaaattttcccaatcaacctt 245  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||  ||||||||||||||||||||  || | |||||||||  |||||| |||||    
T  29269866 tcttgcacaccacaccaaacctaacatgatctatgtgttcttccaactcgtcaagaaccaaactaagagggtagcaatctaaatttgaccaatctacctt 29269767  T
Q  246 cctcattgc 254  Q
     ||||||||    
T  29269766 tctcattgc 29269758  T

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Target: chr7; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 19 - 126
Target Start/End: Original strand, 28612160 - 28612267
Alignment:
Q  19 tggcacagaaattgaatcgctagttccaacaaataaaatgttgttttccaaactctcaagtttgttgatttgttcaacttttccgctctgggcgtccagt 118  Q
    |||||||||||||||||| | | |||| |||||||||||||||| ||||||||||||||||||||| || ||||||| |||||| |||||| | ||||||    
T  28612160 tggcacagaaattgaatcaccaattccgacaaataaaatgttgtcttccaaactctcaagtttgttcatctgttcaagttttccactctggacatccagt 28612259  T
Q  119 tccaattt 126  Q
    ||||||||    
T  28612260 tccaattt 28612267  T

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Target: chr7; HSP #5
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 22 - 131
Target Start/End: Complemental strand, 29270696 - 29270587
Alignment:
Q  22 cacagaaattgaatcgctagttccaacaaataaaatgttgttttccaaactctcaagtttgttgatttgttcaacttttccgctctgggcgtccagttcc 121  Q
    ||||||||||||||| |   |||| ||||||||||||||||| || |||||||||||||| || ||||||||||||||||||||||||||||||| ||||    
T  29270696 cacagaaattgaatcaccgattccgacaaataaaatgttgttctctaaactctcaagtttttttatttgttcaacttttccgctctgggcgtccatttcc 29270597  T
Q  122 aatttcaaaa 131  Q
    | ||| ||||    
T  29270596 attttgaaaa 29270587  T

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Target: chr7; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 42 - 131
Target Start/End: Complemental strand, 29288500 - 29288411
Alignment:
Q  42 ttccaacaaataaaatgttgttttccaaactctcaagtttgttgatttgttcaacttttccgctctgggcgtccagttccaatttcaaaa 131  Q
    |||| |||||||||||||||| ||||||||||||||||||||| || ||||||| |||||| |||||||| |||||||||||||| ||||    
T  29288500 ttccgacaaataaaatgttgtcttccaaactctcaagtttgttcatctgttcaagttttccactctgggcatccagttccaatttgaaaa 29288411  T

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Target: chr7; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 142 - 208
Target Start/End: Original strand, 28612975 - 28613041
Alignment:
Q  142 caagtcttgcacaccacacgaaacctaacatgatctatgtgttcttccaacttatcaagaaccaaac 208  Q
    |||||||||||||| |||  ||||||||||||||||||||||||||||||||| |||||||||||||    
T  28612975 caagtcttgcacacgacagcaaacctaacatgatctatgtgttcttccaacttgtcaagaaccaaac 28613041  T

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Target: chr7; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 42 - 131
Target Start/End: Complemental strand, 29283061 - 29282972
Alignment:
Q  42 ttccaacaaataaaatgttgttttccaaactctcaagtttgttgatttgttcaacttttccgctctgggcgtccagttccaatttcaaaa 131  Q
    |||| |||||||||||| ||| ||||||||||||||||||||| || ||||| | |||||| |||||||| |||||||||||||| ||||    
T  29283061 ttccgacaaataaaatgctgtcttccaaactctcaagtttgttcatgtgttctagttttccactctgggcatccagttccaatttgaaaa 29282972  T

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Target: chr7; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 148 - 216
Target Start/End: Complemental strand, 28621319 - 28621251
Alignment:
Q  148 ttgcacaccacacgaaacctaacatgatctatgtgttcttccaacttatcaagaaccaaactaagagga 216  Q
    |||||||| |||| ||||||||||||||| |||||||||||||| || |||||||||||||||||||||    
T  28621319 ttgcacacgacaccaaacctaacatgatcgatgtgttcttccaatttgtcaagaaccaaactaagagga 28621251  T

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Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 142 - 216
Target Start/End: Complemental strand, 28614726 - 28614653
Alignment:
Q  142 caagtcttgcacaccacacgaaacctaacatgatctatgtgttcttccaacttatcaagaaccaaactaagagga 216  Q
    |||||||||||||| ||||  |||||||||||||||||||||||||| |||||  ||||||||||| ||||||||    
T  28614726 caagtcttgcacacgacactgaacctaacatgatctatgtgttcttctaactt-gcaagaaccaaattaagagga 28614653  T

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Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 42 - 102
Target Start/End: Complemental strand, 28623388 - 28623328
Alignment:
Q  42 ttccaacaaataaaatgttgttttccaaactctcaagtttgttgatttgttcaacttttcc 102  Q
    |||||||||| |||||||||| ||||||||||| ||||||||| |||||||||| ||||||    
T  28623388 ttccaacaaaaaaaatgttgtcttccaaactcttaagtttgttcatttgttcaagttttcc 28623328  T

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Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 146 - 255
Target Start/End: Complemental strand, 29282245 - 29282136
Alignment:
Q  146 tcttgcacaccacacgaaacctaacatgatctatgtgttcttccaacttatcaagaaccaaactaagagg-agaggattctaaattttcccaatcaacct 244  Q
    |||| ||||| ||||  ||||||||||  ||| | ||| |||||||||| |||||||||||||||||||| ||   ||| ||||||| ||||||||||||    
T  29282245 tcttacacacaacaccgaacctaacatagtctgtttgtacttccaacttttcaagaaccaaactaagaggaagttcatt-taaatttgcccaatcaacct 29282147  T
Q  245 tcctcattgct 255  Q
    |||||||||||    
T  29282146 tcctcattgct 29282136  T

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Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 146 - 216
Target Start/End: Complemental strand, 29287699 - 29287629
Alignment:
Q  146 tcttgcacaccacacgaaacctaacatgatctatgtgttcttccaacttatcaagaaccaaactaagagga 216  Q
    |||| |||||||||| |||||||||||  ||| | ||| |||||||||| |||||||||||||||||||||    
T  29287699 tcttacacaccacaccaaacctaacatagtctgtttgtacttccaacttttcaagaaccaaactaagagga 29287629  T

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Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 175 - 239
Target Start/End: Complemental strand, 29287040 - 29286976
Alignment:
Q  175 tctatgtgttcttccaacttatcaagaaccaaactaagaggagaggattctaaattttcccaatc 239  Q
    |||||||||||||||||||| ||||| |||||||| |||||  || ||||||||||| |||||||    
T  29287040 tctatgtgttcttccaacttgtcaagcaccaaactgagagggtagcattctaaatttgcccaatc 29286976  T

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Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 49 - 126
Target Start/End: Complemental strand, 28615516 - 28615439
Alignment:
Q  49 aaataaaatgttgttttccaaactctcaagtttgttgatttgttcaacttttccgctctgggcgtccagttccaattt 126  Q
    |||||||||||||| | ||||||||| |||  |||| |||||| ||| |||||| |||| || |||||||| ||||||    
T  28615516 aaataaaatgttgtctcccaaactcttaagcatgttcatttgtacaagttttccactcttggtgtccagtttcaattt 28615439  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 146 - 216
Target Start/End: Complemental strand, 49149636 - 49149566
Alignment:
Q  146 tcttgcacaccacacgaaacctaacatgatctatgtgttcttccaacttatcaagaaccaaactaagagga 216  Q
    ||||||||||  ||| ||||| ||||||||||||||||||||| ||| | ||||||||||||| |||||||    
T  49149636 tcttgcacacagcaccaaaccaaacatgatctatgtgttcttctaacatgtcaagaaccaaaccaagagga 49149566  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 146 - 238
Target Start/End: Complemental strand, 4235496 - 4235404
Alignment:
Q  146 tcttgcacaccacacgaaacctaacatgatctatgtgttcttccaacttatcaagaaccaaactaagaggagaggattctaaattttcccaat 238  Q
    ||||||||||  ||| ||||| |||||||| |||||||||||| ||||| ||||| | |||||||||||||   | |||||||||| ||||||    
T  4235496 tcttgcacacagcaccaaaccaaacatgatatatgtgttcttctaacttgtcaagtatcaaactaagaggaagtgcttctaaatttgcccaat 4235404  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 142 - 238
Target Start/End: Complemental strand, 49145093 - 49144997
Alignment:
Q  142 caagtcttgcacaccacacgaaacctaacatgatctatgtgttcttccaacttatcaagaaccaaactaagaggagaggattctaaattttcccaat 238  Q
    ||||||||||||||  ||| ||||  ||||| ||||||||||||||| ||||| ||||||| |||| |||||| |  || |||||||||| ||||||    
T  49145093 caagtcttgcacacagcaccaaacgaaacataatctatgtgttcttctaacttgtcaagaatcaaattaagagcaagggcttctaaatttgcccaat 49144997  T

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