View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18982_high_74 (Length: 274)
Name: NF18982_high_74
Description: NF18982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18982_high_74 |
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Alignment Details
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 20 - 256
Target Start/End: Complemental strand, 51122274 - 51122037
Alignment:
| Q |
20 |
tataatttatacaagagtaaaacaacatagcaagcaaagacaagacatacatttttataagggaaaaaaggattatttcccttaggatgtagaggaaata |
119 |
Q |
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| T |
51122274 |
tataatttatacaggagtaaagcaacatagcaagcaaagacaaggcatacatttttataagggaaaaaaggattatttcccttaggatgtggaggaaata |
51122175 |
T |
|
| Q |
120 |
tcatccaaatatgcaataaattgagacaatcaattat-ttttatccattagccaaaatcatgtgacaaaaagctgcagcttcctagacaataaagtatat |
218 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51122174 |
tcatccaaatatgcaataaattgagacaatcaattattttttatccattagccaaaatcatgtgacaaaaagctgcagcttcctagacaataaagtatat |
51122075 |
T |
|
| Q |
219 |
aaaattaaatactgagaaagcaacacaggcaccatata |
256 |
Q |
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| T |
51122074 |
aaaattaaatactgagaaagcaacacaagcaccatata |
51122037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 106 - 253
Target Start/End: Original strand, 39016527 - 39016675
Alignment:
| Q |
106 |
atgtagaggaaatatcatccaaatatgcaataaattgagacaatcaattatttt-tatccattagccaaaatcatgtgacaaaaagctgcagcttcctag |
204 |
Q |
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|||| ||||||| |||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
39016527 |
atgtggaggaaagatcatccaaatatgcaatgaattgagacaatcaattattttttatccattagccaaaatcatgtgacaaaaaactgcagcttcctag |
39016626 |
T |
|
| Q |
205 |
acaataaagtatataaaattaaatactgagaaagcaacacaggcaccat |
253 |
Q |
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| T |
39016627 |
acaataaagtatataaaattaaatactgagaaagcaacacaggcaccat |
39016675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 16 - 98
Target Start/End: Original strand, 39016394 - 39016478
Alignment:
| Q |
16 |
atcctataatttatacaagagtaaaacaac--atagcaagcaaagacaagacatacatttttataagggaaaaaaggattatttc |
98 |
Q |
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| T |
39016394 |
atcctataatttatacaggagtaaaatagtgtatagcaagcaaagacaaggcatacatttttataagggaaaaaaggattatttc |
39016478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 68
Target Start/End: Complemental strand, 30072781 - 30072729
Alignment:
| Q |
16 |
atcctataatttatacaagagtaaaacaacatagcaagcaaagacaagacata |
68 |
Q |
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|
| T |
30072781 |
atcctataatttatacaagagtaaaacagcatagcaagcaaagacaaggcata |
30072729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 55
Target Start/End: Complemental strand, 30369348 - 30369309
Alignment:
| Q |
16 |
atcctataatttatacaagagtaaaacaacatagcaagca |
55 |
Q |
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|
| T |
30369348 |
atcctataatttatacaggagtaaaacaacatagcaagca |
30369309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 63
Target Start/End: Complemental strand, 30013077 - 30013026
Alignment:
| Q |
16 |
atcctataatttatacaagagtaaaacaac----atagcaagcaaagacaag |
63 |
Q |
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|
| T |
30013077 |
atcctataatttatacaggagtaaaacaacatatatagcaagcaaagacaag |
30013026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 55
Target Start/End: Complemental strand, 38827470 - 38827431
Alignment:
| Q |
16 |
atcctataatttatacaagagtaaaacaacatagcaagca |
55 |
Q |
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| T |
38827470 |
atcctataatttatacaggagtaaaacaacatagcaagca |
38827431 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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