View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18982_high_77 (Length: 254)

Name: NF18982_high_77
Description: NF18982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18982_high_77
NF18982_high_77
[»] chr4 (5 HSPs)
chr4 (1-241)||(48962666-48962906)
chr4 (1-220)||(48958540-48958759)
chr4 (63-236)||(48965706-48965879)
chr4 (73-221)||(48911981-48912129)
chr4 (120-179)||(48951668-48951727)
[»] chr6 (2 HSPs)
chr6 (18-239)||(12589750-12589971)
chr6 (103-237)||(12483130-12483264)
[»] chr2 (3 HSPs)
chr2 (80-206)||(13440607-13440733)
chr2 (80-221)||(13448755-13448896)
chr2 (80-206)||(13455241-13455367)
[»] scaffold0536 (2 HSPs)
scaffold0536 (88-239)||(6162-6313)
scaffold0536 (90-239)||(10148-10297)
[»] chr5 (2 HSPs)
chr5 (80-199)||(28385748-28385867)
chr5 (71-212)||(12541086-12541227)
[»] chr8 (1 HSPs)
chr8 (80-179)||(12641124-12641223)
[»] chr7 (1 HSPs)
chr7 (75-161)||(3417171-3417257)


Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-129; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 48962906 - 48962666
Alignment:
Q  1 caaagccgccgaagtcattcaccggattcatggaaatggtgcatgagacaatgctaaaaacaaatggactcattgtcagcaacttcgctgaacttgacgg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  48962906 caaagccgccgaagtcattcaccggattcatggaaatggtgcatgagacaatgctaaaaacaaatggactcattgtcaacaacttcgctgaacttgacgg 48962807  T
Q  101 tgaagagtgcatcgaacactacgagaaaaccacaggtcacaaggcttggcatctcggtccagtttctcttattcgcaaatccgttcaagagaaagcagaa 200  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48962806 tgaagagtgcatcgaacactacgagaaaaccacgggtcacaaggcttggcatctcggtccagtttctcttattcgcaaatccgttcaagagaaagcagaa 48962707  T
Q  201 aggggacatgagagtgttgtgggcgtacaagagtgtctgtg 241  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  48962706 aggggacatgagagtgttgtgggcgtacaagagtgtctgtg 48962666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 48958759 - 48958540
Alignment:
Q  1 caaagccgccgaagtcattcaccggattcatggaaatggtgcatgagacaatgctaaaaacaaatggactcattgtcagcaacttcgctgaacttgacgg 100  Q
    |||||||||| |||  |||||||||||||||||||||| ||| ||||||||| || ||||  || ||||||||  ||| |||||||  ||||||||| ||    
T  48958759 caaagccgccaaagatattcaccggattcatggaaatgatgcttgagacaatcctcaaaagtaagggactcatcatcaacaacttcattgaacttgatgg 48958660  T
Q  101 tgaagagtgcatcgaacactacgagaaaaccacaggtcacaaggcttggcatctcggtccagtttctcttattcgcaaatccgttcaagagaaagcagaa 200  Q
    |||||||||||||||||||||| |||||| ||| |||||||||| ||||||||| ||||| | ||||||||||||| || || ||||||||||| ||||     
T  48958659 tgaagagtgcatcgaacactacaagaaaatcacgggtcacaaggtttggcatcttggtcctgcttctcttattcgccaaaccattcaagagaaatcagag 48958560  T
Q  201 aggggacatgagagtgttgt 220  Q
    |||||| |||||| ||||||    
T  48958559 aggggaaatgagaatgttgt 48958540  T

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Target: chr4; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 63 - 236
Target Start/End: Complemental strand, 48965879 - 48965706
Alignment:
Q  63 aatggactcattgtcagcaacttcgctgaacttgacggtgaagagtgcatcgaacactacgagaaaaccacaggtcacaaggcttggcatctcggtccag 162  Q
    |||||||||||||||| ||| |||||||| |||||||| ||||||| |||  || | || | ||  | ||| ||||| |||||||||||||| |||||||    
T  48965879 aatggactcattgtcaacaatttcgctgagcttgacggggaagagtacattaaatattatgtgagtagcacgggtcataaggcttggcatcttggtccag 48965780  T
Q  163 tttctcttattcgcaaatccgttcaagagaaagcagaaaggggacatgagagtgttgtgggcgtacaagagtgt 236  Q
     |||||||||||| ||| | ||||||||||||||||| |||||||| |||||||  ||| |||| |||||||||    
T  48965779 cttctcttattcgtaaaactgttcaagagaaagcagagaggggacaagagagtgcagtgagcgtgcaagagtgt 48965706  T

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Target: chr4; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 73 - 221
Target Start/End: Original strand, 48911981 - 48912129
Alignment:
Q  73 ttgtcagcaacttcgctgaacttgacggtgaagagtgcatcgaacactacgagaaaaccacaggtcacaaggcttggcatctcggtccagtttctcttat 172  Q
    |||||| ||| || ||||||||||||||||||||||  |||||||||||||||||||| ||  ||||||| ||||||||||| ||||||| |||||||||    
T  48911981 ttgtcaacaattttgctgaacttgacggtgaagagtatatcgaacactacgagaaaactacttgtcacaaagcttggcatcttggtccagcttctcttat 48912080  T
Q  173 tcgcaaatccgttcaagagaaagcagaaaggggacatgagagtgttgtg 221  Q
    ||||| | |  |||||||||| || || || ||| | ||||||||||||    
T  48912081 tcgcagaactattcaagagaaggctgagagaggagaagagagtgttgtg 48912129  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 120 - 179
Target Start/End: Complemental strand, 48951727 - 48951668
Alignment:
Q  120 tacgagaaaaccacaggtcacaaggcttggcatctcggtccagtttctcttattcgcaaa 179  Q
    |||||||||||||  |||||||||||||||||||| ||||| |  |||||| ||||||||    
T  48951727 tacgagaaaaccatcggtcacaaggcttggcatcttggtccggcctctcttgttcgcaaa 48951668  T

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Target: chr6 (Bit Score: 106; Significance: 4e-53; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 18 - 239
Target Start/End: Original strand, 12589750 - 12589971
Alignment:
Q  18 ttcaccggattcatggaaatggtgcatgagacaatgctaaaaacaaatggactcattgtcagcaacttcgctgaacttgacggtgaagagtgcatcgaac 117  Q
    ||||||| | ||||||||| | ||| |||| |||| || ||||  |||||||||||||| | |||||||||||||||||| ||  |||||||  || |||    
T  12589750 ttcaccgaagtcatggaaacgatgcttgaggcaatactcaaaagtaatggactcattgttaacaacttcgctgaacttgatggccaagagtgtgtcaaac 12589849  T
Q  118 actacgagaaaaccacaggtcacaaggcttggcatctcggtccagtttctcttattcgcaaatccgttcaagagaaagcagaaaggggacatgagagtgt 217  Q
    |||| |||||||||||||||||||||||||||||||| ||||||| ||||||||||| |||| | ||||||||||||||||| |||||| ||||||||||    
T  12589850 actatgagaaaaccacaggtcacaaggcttggcatcttggtccagcttctcttattcacaaaactgttcaagagaaagcagataggggaaatgagagtgt 12589949  T
Q  218 tgtgggcgtacaagagtgtctg 239  Q
    ||||  ||| ||||||||||||    
T  12589950 tgtgaacgtgcaagagtgtctg 12589971  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 103 - 237
Target Start/End: Original strand, 12483130 - 12483264
Alignment:
Q  103 aagagtgcatcgaacactacgagaaaaccacaggtcacaaggcttggcatctcggtccagtttctcttattcgcaaatccgttcaagagaaagcagaaag 202  Q
    |||| ||| ||||||||||||| |||| ||  |||||||||||||||||| | ||||||  ||| |||||| |  || | |||||||| || ||||| ||    
T  12483130 aagaatgcgtcgaacactacgaaaaaatcatgggtcacaaggcttggcatttaggtccacattcacttatttgtgaaactgttcaagaaaaggcagagag 12483229  T
Q  203 gggacatgagagtgttgtgggcgtacaagagtgtc 237  Q
    |||| | |||||||||||| |||| || |||||||    
T  12483230 gggaaacgagagtgttgtgagcgtgcatgagtgtc 12483264  T

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Target: chr2 (Bit Score: 79; Significance: 5e-37; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 80 - 206
Target Start/End: Complemental strand, 13440733 - 13440607
Alignment:
Q  80 caacttcgctgaacttgacggtgaagagtgcatcgaacactacgagaaaaccacaggtcacaaggcttggcatctcggtccagtttctcttattcgcaaa 179  Q
    ||||||| ||||||||||||| |||||||||||| ||||||| ||||||||||| |||||||||| ||||||||||||||||  |||||||||||| |||    
T  13440733 caacttcactgaacttgacggagaagagtgcatccaacactatgagaaaaccacgggtcacaaggtttggcatctcggtccaacttctcttattcgtaaa 13440634  T
Q  180 tccgttcaagagaaagcagaaagggga 206  Q
     || |||||||||||||||| ||||||    
T  13440633 accattcaagagaaagcagagagggga 13440607  T

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Target: chr2; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 80 - 221
Target Start/End: Complemental strand, 13448896 - 13448755
Alignment:
Q  80 caacttcgctgaacttgacggtgaagagtgcatcgaacactacgagaaaaccacaggtcacaaggcttggcatctcggtccagtttctcttattcgcaaa 179  Q
    |||||||  ||||||||| || |||||||||||  |||||||||||||| |||| |||||||||| ||||||||| ||||||  ||||||||||||||||    
T  13448896 caacttcagtgaacttgatggagaagagtgcatacaacactacgagaaagccacgggtcacaaggtttggcatcttggtccaacttctcttattcgcaaa 13448797  T
Q  180 tccgttcaagagaaagcagaaaggggacatgagagtgttgtg 221  Q
     | | |||||||||| |||| |||||| ||||| ||| ||||    
T  13448796 actgctcaagagaaatcagagaggggaaatgagggtgctgtg 13448755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 80 - 206
Target Start/End: Complemental strand, 13455367 - 13455241
Alignment:
Q  80 caacttcgctgaacttgacggtgaagagtgcatcgaacactacgagaaaaccacaggtcacaaggcttggcatctcggtccagtttctcttattcgcaaa 179  Q
    |||||||  |||| |||| || |||||||||||| |||||||||| ||||| ||||||||||||| ||||||| | ||||||  |||||||||| ||| |    
T  13455367 caacttcagtgaatttgatggagaagagtgcatccaacactacgaaaaaacaacaggtcacaaggtttggcatattggtccaacttctcttatttgcaga 13455268  T
Q  180 tccgttcaagagaaagcagaaagggga 206  Q
     |||||||||| ||| |||| ||||||    
T  13455267 accgttcaagaaaaatcagagagggga 13455241  T

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Target: scaffold0536 (Bit Score: 72; Significance: 7e-33; HSPs: 2)
Name: scaffold0536
Description:

Target: scaffold0536; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 88 - 239
Target Start/End: Original strand, 6162 - 6313
Alignment:
Q  88 ctgaacttgacggtgaagagtgcatcgaacactacgagaaaaccacaggtcacaaggcttggcatctcggtccagtttctcttattcgcaaatccgttca 187  Q
    ||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| ||||||||||| ||||| | |||||||||||| | | | |||||    
T  6162 ctgaacttgacggtgaagagtacatcgaacactacgagaaaactacaggtcacaaagcttggcatcttggtccggcttctcttattcgtagaactgttca 6261  T
Q  188 agagaaagcagaaaggggacatgagagtgttgtgggcgtacaagagtgtctg 239  Q
    ||| |||||| | ||||||||  | ||||||||| | || || |||||||||    
T  6262 agaaaaagcacagaggggacaacaaagtgttgtgagtgtgcatgagtgtctg 6313  T

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Target: scaffold0536; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 90 - 239
Target Start/End: Original strand, 10148 - 10297
Alignment:
Q  90 gaacttgacggtgaagagtgcatcgaacactacgagaaaaccacaggtcacaaggcttggcatctcggtccagtttctcttattcgcaaatccgttcaag 189  Q
    |||||||||||| || ||  ||||||||||||| ||||||| || ||||| || |||||||||||  |||||| || |||| |||| | | | |||||||    
T  10148 gaacttgacggtaaatagcacatcgaacactacaagaaaactacgggtcagaaagcttggcatcttagtccagcttatcttgttcgtagaactgttcaag 10247  T
Q  190 agaaagcagaaaggggacatgagagtgttgtgggcgtacaagagtgtctg 239  Q
    ||||| |||| || ||| |  ||||||||||| | || || |||||||||    
T  10248 agaaaacagagagaggagaacagagtgttgtgagtgtgcatgagtgtctg 10297  T

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Target: chr5 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 80 - 199
Target Start/End: Complemental strand, 28385867 - 28385748
Alignment:
Q  80 caacttcgctgaacttgacggtgaagagtgcatcgaacactacgagaaaaccacaggtcacaaggcttggcatctcggtccagtttctcttattcgcaaa 179  Q
    |||||| | ||||||||| || ||||||||  || ||||||||||||||||||| |||||||||||||||||||| ||||||  |||  ||||||| |||    
T  28385867 caactttgttgaacttgatggagaagagtgtgtcaaacactacgagaaaaccacgggtcacaaggcttggcatcttggtccaacttcctttattcgtaaa 28385768  T
Q  180 tccgttcaagagaaagcaga 199  Q
     | |||||||||||||||||    
T  28385767 actgttcaagagaaagcaga 28385748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 71 - 212
Target Start/End: Complemental strand, 12541227 - 12541086
Alignment:
Q  71 cattgtcagcaacttcgctgaacttgacggtgaagagtgcatcgaacactacgagaaaaccacaggtcacaaggcttggcatctcggtccagtttctctt 170  Q
    |||| ||| |||||| | ||||||||| || ||||||||  || ||||||||||||||||||| |||||||||||||||||||| ||||||  |||| ||    
T  12541227 cattatcaacaactttgttgaacttgatggagaagagtgtgtccaacactacgagaaaaccacgggtcacaaggcttggcatcttggtccaacttctttt 12541128  T
Q  171 attcgcaaatccgttcaagagaaagcagaaaggggacatgag 212  Q
    ||||  |||  | |||||||||||||||  |||||| |||||    
T  12541127 attcagaaaaacattcaagagaaagcagggaggggaaatgag 12541086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 80 - 179
Target Start/End: Original strand, 12641124 - 12641223
Alignment:
Q  80 caacttcgctgaacttgacggtgaagagtgcatcgaacactacgagaaaaccacaggtcacaaggcttggcatctcggtccagtttctcttattcgcaaa 179  Q
    |||||| | ||||||||| |||||||| |||||| ||||||| ||||||||||  ||| |||||||||||||||| ||||||  || |||||||||||||    
T  12641124 caactttgttgaacttgatggtgaagattgcatcaaacactatgagaaaaccatgggttacaaggcttggcatcttggtccaacttgtcttattcgcaaa 12641223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 75 - 161
Target Start/End: Original strand, 3417171 - 3417257
Alignment:
Q  75 gtcagcaacttcgctgaacttgacggtgaagagtgcatcgaacactacgagaaaaccacaggtcacaaggcttggcatctcggtcca 161  Q
    |||| |||||||  ||||||||| || |||||||| ||  ||||||| |||||||||  ||||||||||||||||||||| ||||||    
T  3417171 gtcaacaacttcattgaacttgatggagaagagtgtattcaacactatgagaaaaccgtaggtcacaaggcttggcatcttggtcca 3417257  T

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