View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18982_high_80 (Length: 252)
Name: NF18982_high_80
Description: NF18982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18982_high_80 |
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Alignment Details
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 11 - 234
Target Start/End: Complemental strand, 25365164 - 25364941
Alignment:
| Q |
11 |
catcatcaaaagaagcaaacttgaactaaatgacaaacacccagatgaagaaaatctgataaaagctgaaaaaatgtctctgggaaatgaaagaactgcg |
110 |
Q |
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| T |
25365164 |
catcaacaaaagaagcaaacttgaactaaatgacaaacacccagatgaagaaaatctgataaaagctgaaaaaatgtctctgggaaatgaaagaactgcg |
25365065 |
T |
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| Q |
111 |
cctaccctatagtaaagggtgattcatggtatgaacgtgagaaaaggttgaacctttttgaataacacgcaaaggtgttaaaaggagagaatccaggtga |
210 |
Q |
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| T |
25365064 |
cctactctatagtaaagggtgattcatggtatgaacgtgagaaaaggttgaacctttttgaagaacacgcaaaggtgttaaaaggagggaatccaggtga |
25364965 |
T |
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| Q |
211 |
agagaaagagtagaataatgggat |
234 |
Q |
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||||||| |||||||||||||||| |
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| T |
25364964 |
agagaaaaagtagaataatgggat |
25364941 |
T |
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