View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18982_high_89 (Length: 236)
Name: NF18982_high_89
Description: NF18982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18982_high_89 |
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| [»] scaffold0123 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 16 - 220
Target Start/End: Complemental strand, 2758659 - 2758455
Alignment:
| Q |
16 |
aatattcgattaaaaggtttgcgaaagtgtgattttctaaaatcttttgaaagattatttgactgttgaatttatgcccaccgttaaaatgataaaagct |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2758659 |
aatattcgattaaaaggtttgcgaaagtgtgattttctaaaatcttttggaagattatttgactgttgaatttatgcccaccgttaaaatgataaaagct |
2758560 |
T |
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| Q |
116 |
aaacaatgcaataataccaattcaatatcaacaagaaattcaactatgaattgtattatgattaatcaagagtcaatacactaatcaacttacaaaatta |
215 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2758559 |
aaacaatgcaataataccaattcaatatgaacaagaaattcaactatgaattgtattatgattaatcaagagtcaatacactaatcaacttacaaaatta |
2758460 |
T |
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| Q |
216 |
taact |
220 |
Q |
| |
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||||| |
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| T |
2758459 |
taact |
2758455 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 103 - 220
Target Start/End: Complemental strand, 2762507 - 2762388
Alignment:
| Q |
103 |
aatgataaaagctaaacaat--gcaataataccaattcaatatcaacaagaaattcaactatgaattgtattatgattaatcaagagtcaatacactaat |
200 |
Q |
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|||||||||||||||||||| |||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |
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| T |
2762507 |
aatgataaaagctaaacaatatgcaacaataccaattcaatatgaacaagaaattcaactatgaattgtattatgattaatcaagagccaatacgctaat |
2762408 |
T |
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| Q |
201 |
caacttacaaaattataact |
220 |
Q |
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| T |
2762407 |
caacttacaaaactataact |
2762388 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 27 - 191
Target Start/End: Complemental strand, 2768149 - 2767986
Alignment:
| Q |
27 |
aaaaggtttgcgaaagtgtgattttctaaaatcttttgaaagattatttgactgttgaatttatgcccaccgttaaaatgataaaagctaaacaatgcaa |
126 |
Q |
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| T |
2768149 |
aaaaggtttgtggaagtgtggttttctaaaatctcttggaaaatgatatgactattgaatttatgcc-atgatttaaatgataaaagataaacaatgcaa |
2768051 |
T |
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| Q |
127 |
taa-taccaattcaatatcaacaagaaattcaactatgaattgtattatgattaatcaagagtcaa |
191 |
Q |
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||| |||||||||||||| |||||||||||||| || |||||||||||||||||||||||| |||| |
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| T |
2768050 |
taaataccaattcaatat-aacaagaaattcaattacgaattgtattatgattaatcaagaatcaa |
2767986 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 197
Target Start/End: Original strand, 17261968 - 17262032
Alignment:
| Q |
133 |
caattcaatatcaacaagaaattcaactatgaattgtattatgattaatcaagagtcaatacact |
197 |
Q |
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| T |
17261968 |
caattcaatataaataagaaatccaactataaattgtaatatgatcaatcaaaagttgatacact |
17262032 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 103 - 220
Target Start/End: Original strand, 17795072 - 17795188
Alignment:
| Q |
103 |
aatgataaaagctaaacaatgcaataataccaattcaatatcaacaagaaattcaactatgaattgtattatgattaatcaagagtcaatacactaatca |
202 |
Q |
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|||||||| || |||| |||| ||||||| |||||||||| || ||||||||||||||||||||||||||||||||||||| | |||||||||||| | |
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| T |
17795072 |
aatgataagagataaataatgtgataatactaattcaatatgaagaagaaattcaactatgaattgtattatgattaatcaaaattcaatacactaa-aa |
17795170 |
T |
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| Q |
203 |
acttacaaaattataact |
220 |
Q |
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| T |
17795171 |
atttacaaaactataact |
17795188 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0123 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0123
Description:
Target: scaffold0123; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 126 - 199
Target Start/End: Complemental strand, 13027 - 12954
Alignment:
| Q |
126 |
ataataccaattcaatatcaacaagaaattcaactatgaattgtattatgattaatcaagagtcaatacactaa |
199 |
Q |
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||||||| |||||||||| || ||||||||||||||||||||||||||||||||||||| | |||||||||||| |
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| T |
13027 |
ataatactaattcaatatgaataagaaattcaactatgaattgtattatgattaatcaaaattcaatacactaa |
12954 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 103 - 184
Target Start/End: Complemental strand, 28506505 - 28506424
Alignment:
| Q |
103 |
aatgataaaagctaaacaatgcaataataccaattcaatatcaacaagaaattcaactatgaattgtattatgattaatcaa |
184 |
Q |
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|||||||| || ||||||||||||||||| ||||||||||| | ||||||| ||||||| ||||| | ||||||||||||| |
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| T |
28506505 |
aatgataagagataaacaatgcaataataacaattcaatatgattaagaaatccaactataaattggactatgattaatcaa |
28506424 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 151 - 220
Target Start/End: Original strand, 13798376 - 13798445
Alignment:
| Q |
151 |
aaattcaactatgaattgtattatgattaatcaagagtcaatacactaatcaacttacaaaattataact |
220 |
Q |
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| T |
13798376 |
aaatttaagtatgaattgttttatgattaatcaaaattcaatacaataaacaatttacaaaactataact |
13798445 |
T |
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