View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18982_high_90 (Length: 234)
Name: NF18982_high_90
Description: NF18982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18982_high_90 |
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Alignment Details
Target: chr8 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 13 - 217
Target Start/End: Original strand, 34174009 - 34174213
Alignment:
| Q |
13 |
aatatcataaggaagacaaacttgaatatcaatactaccttcttccgccccaccaaatatagtaactttaccaatannnnnnngaagtccaaccccattc |
112 |
Q |
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| T |
34174009 |
aatatcataaggaagacaaacttgaatatcaatactaccttcttccgccccacaaaatatagtaactttaccgatatttttttgaagtccaaccccattc |
34174108 |
T |
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| Q |
113 |
ctaactgcaattggcttaccccaaccaaagtcattaccataaaaatcaaatcttggggaattacttactaaatacacattagtacttcttaacatacctg |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
34174109 |
ctaactgcaattggcttaccccaaccaaagtcattaccataaaaatcaaatcttggggaattacttactaaatacacattactacttcttaacatacctg |
34174208 |
T |
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| Q |
213 |
cctct |
217 |
Q |
| |
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||||| |
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| T |
34174209 |
cctct |
34174213 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 66; Significance: 3e-29; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 13 - 147
Target Start/End: Original strand, 39075115 - 39075249
Alignment:
| Q |
13 |
aatatcataaggaagacaaacttgaatatcaatactaccttcttccgccccaccaaatatagtaactttaccaatannnnnnngaagtccaaccccattc |
112 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||| | ||||||| | | ||||| |||||||| ||||||||| ||||| |
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| T |
39075115 |
aatatcataaggaagacaaacttgaatatcaacactaccttcttcttcaccaccaagcacaataactctaccaatatttcttttaagtccaacaccattt |
39075214 |
T |
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| Q |
113 |
ctaactgcaattggcttaccccaaccaaagtcatt |
147 |
Q |
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| T |
39075215 |
ctaactgcaattggcttaccccaaccaaagtcatt |
39075249 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 13 - 150
Target Start/End: Original strand, 7398364 - 7398501
Alignment:
| Q |
13 |
aatatcataaggaagacaaacttgaatatcaatactaccttcttccgccccaccaaatatagtaactttaccaatannnnnnngaagtccaaccccattc |
112 |
Q |
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| T |
7398364 |
aatattataaggaaaagaaacttcaatatcaatactaccttcttcttccccaccaagcacattaactataccaatatttcttttaagtccaacaccattt |
7398463 |
T |
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| Q |
113 |
ctaactgcaattggcttaccccaaccaaagtcattacc |
150 |
Q |
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| T |
7398464 |
ctaactgcaataggcttaccccaaccgaagtcattacc |
7398501 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 125 - 177
Target Start/End: Original strand, 39097685 - 39097737
Alignment:
| Q |
125 |
ggcttaccccaaccaaagtcattaccataaaaatcaaatcttggggaattact |
177 |
Q |
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| T |
39097685 |
ggcttaccccaaccaaagtcattaccataaacatcaaaccttggagaactact |
39097737 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 57
Target Start/End: Original strand, 39097576 - 39097620
Alignment:
| Q |
13 |
aatatcataaggaagacaaacttgaatatcaatactaccttcttc |
57 |
Q |
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||||||||||| ||| ||||||| || |||||||||||||||||| |
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| T |
39097576 |
aatatcataagaaaggcaaacttcaacatcaatactaccttcttc |
39097620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 57
Target Start/End: Complemental strand, 8936319 - 8936279
Alignment:
| Q |
17 |
tcataaggaagacaaacttgaatatcaatactaccttcttc |
57 |
Q |
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||||| |||||||||||||||| ||||||||||||||||| |
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| T |
8936319 |
tcatatggaagacaaacttgaaggtcaatactaccttcttc |
8936279 |
T |
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