View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18982_low_10 (Length: 614)

Name: NF18982_low_10
Description: NF18982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18982_low_10
NF18982_low_10
[»] chr4 (15 HSPs)
chr4 (1-599)||(3127186-3127765)
chr4 (563-600)||(904072-904109)
chr4 (563-600)||(41844312-41844349)
chr4 (563-599)||(32948692-32948728)
chr4 (563-599)||(38365899-38365935)
chr4 (565-599)||(7182366-7182400)
chr4 (562-600)||(13270442-13270480)
chr4 (565-599)||(41363987-41364021)
chr4 (566-599)||(49936726-49936759)
chr4 (563-596)||(55510136-55510169)
chr4 (563-599)||(16535920-16535956)
chr4 (563-599)||(31187269-31187305)
chr4 (563-595)||(35959400-35959432)
chr4 (564-600)||(36151539-36151575)
chr4 (563-599)||(45899261-45899297)
[»] chr7 (11 HSPs)
chr7 (563-600)||(33113810-33113847)
chr7 (563-599)||(33406807-33406843)
chr7 (562-597)||(43189088-43189123)
chr7 (565-599)||(3658686-3658720)
chr7 (565-599)||(7667340-7667374)
chr7 (569-599)||(47276178-47276208)
chr7 (563-596)||(23465816-23465849)
chr7 (563-596)||(38505160-38505193)
chr7 (563-599)||(7666980-7667016)
chr7 (563-599)||(33872229-33872265)
chr7 (563-599)||(38236021-38236057)
[»] chr2 (14 HSPs)
chr2 (563-600)||(30312574-30312611)
chr2 (563-600)||(38293759-38293796)
chr2 (563-600)||(44137027-44137064)
chr2 (563-599)||(18780252-18780288)
chr2 (565-600)||(8411100-8411135)
chr2 (564-598)||(19382757-19382791)
chr2 (562-599)||(14008144-14008181)
chr2 (563-596)||(15803404-15803437)
chr2 (563-596)||(16625630-16625663)
chr2 (565-594)||(26599073-26599102)
chr2 (567-599)||(8991136-8991168)
chr2 (563-599)||(11950229-11950265)
chr2 (563-591)||(12963790-12963818)
chr2 (563-595)||(41655223-41655255)
[»] chr8 (4 HSPs)
chr8 (563-599)||(3404748-3404784)
chr8 (565-600)||(36906064-36906099)
chr8 (563-599)||(34148396-34148432)
chr8 (563-599)||(36906418-36906454)
[»] chr5 (5 HSPs)
chr5 (563-599)||(35700930-35700966)
chr5 (565-600)||(32760634-32760669)
chr5 (565-599)||(38289539-38289573)
chr5 (563-596)||(4841524-4841557)
chr5 (562-599)||(12229638-12229675)
[»] chr3 (12 HSPs)
chr3 (563-599)||(30121338-30121374)
chr3 (564-599)||(38592851-38592886)
chr3 (565-600)||(42583440-42583475)
chr3 (565-599)||(32859068-32859102)
chr3 (562-600)||(46312590-46312628)
chr3 (565-599)||(52620653-52620687)
chr3 (566-599)||(47714852-47714885)
chr3 (563-599)||(39499065-39499101)
chr3 (564-600)||(40119058-40119094)
chr3 (563-599)||(44411970-44412006)
chr3 (563-599)||(47789621-47789657)
chr3 (563-599)||(49861065-49861101)
[»] chr1 (20 HSPs)
chr1 (564-600)||(26757325-26757361)
chr1 (563-599)||(43572126-43572162)
chr1 (563-598)||(896666-896701)
chr1 (565-600)||(8156508-8156543)
chr1 (565-600)||(50476423-50476458)
chr1 (563-596)||(39509000-39509033)
chr1 (563-600)||(42488796-42488833)
chr1 (563-596)||(43036139-43036172)
chr1 (563-596)||(49102791-49102824)
chr1 (563-596)||(50587264-50587297)
chr1 (565-598)||(51246739-51246772)
chr1 (565-597)||(1278351-1278383)
chr1 (563-599)||(9595790-9595826)
chr1 (563-599)||(12293680-12293716)
chr1 (568-600)||(14152580-14152612)
chr1 (568-600)||(28773548-28773580)
chr1 (563-599)||(32299332-32299368)
chr1 (563-599)||(32300284-32300320)
chr1 (563-599)||(39179281-39179317)
chr1 (563-599)||(47905864-47905900)
[»] scaffold0006 (1 HSPs)
scaffold0006 (565-599)||(59672-59706)
[»] chr6 (4 HSPs)
chr6 (565-599)||(2365772-2365806)
chr6 (563-600)||(9104767-9104804)
chr6 (563-599)||(5825561-5825597)
chr6 (563-599)||(24735111-24735147)
[»] scaffold0632 (1 HSPs)
scaffold0632 (563-596)||(1892-1925)
[»] scaffold0245 (1 HSPs)
scaffold0245 (565-597)||(4028-4060)
[»] scaffold0229 (1 HSPs)
scaffold0229 (565-597)||(4359-4391)


Alignment Details
Target: chr4 (Bit Score: 369; Significance: 0; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 1 - 599
Target Start/End: Complemental strand, 3127765 - 3127186
Alignment:
Q  1 attgtggcattagtgaagaaagtgtagatttctaacatacactttcataatttctnnnnnnntt---tatcaaatgcatataaaactcaaactggcatgc 97  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||            |||||||||||||||||||||||||||||||||    
T  3127765 attgtggcattagtgaagaaagtgtagatttctaacatacactttcataatttctaaaaaaaaaaaatatcaaatgcatataaaactcaaactggcatgc 3127666  T
Q  98 aagtttttagaaccggtggtcgaatgtttaatagcattttattgttacctaggtagtgatgctttgtatttgtctcaa--gcagagtaagaagtttgcgt 195  Q
    |||||||||||||||||||| |||||||||||||                  ||||||||||||||||| ||||||||  ||||||||||||||||||||    
T  3127665 aagtttttagaaccggtggttgaatgtttaatag------------------gtagtgatgctttgtatctgtctcaaaagcagagtaagaagtttgcgt 3127584  T
Q  196 tcgtggattacatatagtagtagcagagctcagagccatcaagatgtttctatgtagtgactcccacatggttgttactcatgctaatagaaattatcta 295  Q
    ||||||||||||||||||||   |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3127583 tcgtggattacatatagtag---cagagctcagagccatcaggatgtttctatgtagtgactcccacatggttgttactcatgctaatagaaattatcta 3127487  T
Q  296 tggagatttttagtgcatctcaaacaactctttgtaaaaatacttgtgtaattgttggagaaatacatatctaattcattcaagtccctctaatgatttt 395  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3127486 aggagatttttagtgcatctcaaacaactctttgtaaaaatacttgtgtaattgttggagaaatacatatctaattcattcaagtccctctaatgatttt 3127387  T
Q  396 gaaatatattttccaaaaagtgtattaaacnnnnnnnnatatataaaattctattaaaactttatttgaaggcatgtcaacttcctcagttatccaaatt 495  Q
    |||||||||||||||||||||||||| |||         ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  3127386 gaaatatattttccaaaaagtgtattgaactttttt---tatataaaattatattaaaactttatttgaaggcatgtcaacttcctcagttatccaaatt 3127290  T
Q  496 tgttcatgagtcagcaccttgttgaaatgtag-nnnnnnnttctcctaaacaccggcaagttattagataaggctttgtttgggagtttggatgggaggg 594  Q
    ||||||||||||||||||||||||||||||||        |||||||||||||||||| |||||||| | ||||||||||| |||||||||| |||||||    
T  3127289 tgttcatgagtcagcaccttgttgaaatgtagaaaaaaaattctcctaaacaccggcaggttattagctgaggctttgttt-ggagtttggaggggaggg 3127191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 563 - 600
Target Start/End: Original strand, 904072 - 904109
Alignment:
Q  563 taaggctttgtttgggagtttggatgggaggggagggt 600  Q
    |||||||||||||||||||||||| |||||||||||||    
T  904072 taaggctttgtttgggagtttggaggggaggggagggt 904109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 563 - 600
Target Start/End: Original strand, 41844312 - 41844349
Alignment:
Q  563 taaggctttgtttgggagtttggatgggaggggagggt 600  Q
    |||||||||||||||||||||||| |||||||||||||    
T  41844312 taaggctttgtttgggagtttggaggggaggggagggt 41844349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 563 - 599
Target Start/End: Complemental strand, 32948728 - 32948692
Alignment:
Q  563 taaggctttgtttgggagtttggatgggaggggaggg 599  Q
    |||||||||||||||||||||||| ||||||||||||    
T  32948728 taaggctttgtttgggagtttggaagggaggggaggg 32948692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 563 - 599
Target Start/End: Original strand, 38365899 - 38365935
Alignment:
Q  563 taaggctttgtttgggagtttggatgggaggggaggg 599  Q
    |||||||||||||||||||||||| ||||||||||||    
T  38365899 taaggctttgtttgggagtttggaggggaggggaggg 38365935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 565 - 599
Target Start/End: Complemental strand, 7182400 - 7182366
Alignment:
Q  565 aggctttgtttgggagtttggatgggaggggaggg 599  Q
    |||||||||||||||||||||| ||||||||||||    
T  7182400 aggctttgtttgggagtttggaggggaggggaggg 7182366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 562 - 600
Target Start/End: Complemental strand, 13270480 - 13270442
Alignment:
Q  562 ataaggctttgtttgggagtttggatgggaggggagggt 600  Q
    |||| |||||||||||||||||||| |||||||||||||    
T  13270480 ataacgctttgtttgggagtttggaggggaggggagggt 13270442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 565 - 599
Target Start/End: Complemental strand, 41364021 - 41363987
Alignment:
Q  565 aggctttgtttgggagtttggatgggaggggaggg 599  Q
    |||||||||||||||||||||| ||||||||||||    
T  41364021 aggctttgtttgggagtttggaggggaggggaggg 41363987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 566 - 599
Target Start/End: Complemental strand, 49936759 - 49936726
Alignment:
Q  566 ggctttgtttgggagtttggatgggaggggaggg 599  Q
    ||||||||||||||||||||| ||||||||||||    
T  49936759 ggctttgtttgggagtttggaggggaggggaggg 49936726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 563 - 596
Target Start/End: Complemental strand, 55510169 - 55510136
Alignment:
Q  563 taaggctttgtttgggagtttggatgggagggga 596  Q
    |||||||||||||||||||||||| |||||||||    
T  55510169 taaggctttgtttgggagtttggaggggagggga 55510136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 563 - 599
Target Start/End: Complemental strand, 16535956 - 16535920
Alignment:
Q  563 taaggctttgtttgggagtttggatgggaggggaggg 599  Q
    ||||| ||||||||||||||||||||||| |||||||    
T  16535956 taaggttttgtttgggagtttggatgggaagggaggg 16535920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 563 - 599
Target Start/End: Complemental strand, 31187305 - 31187269
Alignment:
Q  563 taaggctttgtttgggagtttggatgggaggggaggg 599  Q
    |||||||||||||||||||||||| |||| |||||||    
T  31187305 taaggctttgtttgggagtttggaggggacgggaggg 31187269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 563 - 595
Target Start/End: Complemental strand, 35959432 - 35959400
Alignment:
Q  563 taaggctttgtttgggagtttggatgggagggg 595  Q
    |||||||||||||||||||||||| ||||||||    
T  35959432 taaggctttgtttgggagtttggaggggagggg 35959400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 564 - 600
Target Start/End: Complemental strand, 36151575 - 36151539
Alignment:
Q  564 aaggctttgtttgggagtttggatgggaggggagggt 600  Q
    ||||||||||||| ||||||||| |||||||||||||    
T  36151575 aaggctttgtttgagagtttggaggggaggggagggt 36151539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 563 - 599
Target Start/End: Original strand, 45899261 - 45899297
Alignment:
Q  563 taaggctttgtttgggagtttggatgggaggggaggg 599  Q
    ||||||| |||||||||||||||| ||||||||||||    
T  45899261 taaggctctgtttgggagtttggaggggaggggaggg 45899297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000009; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 563 - 600
Target Start/End: Complemental strand, 33113847 - 33113810
Alignment:
Q  563 taaggctttgtttgggagtttggatgggaggggagggt 600  Q
    |||||||||||||||||||||||| |||||||||||||    
T  33113847 taaggctttgtttgggagtttggaggggaggggagggt 33113810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 563 - 599
Target Start/End: Complemental strand, 33406843 - 33406807
Alignment:
Q  563 taaggctttgtttgggagtttggatgggaggggaggg 599  Q
    |||||||||||||||||||||||| ||||||||||||    
T  33406843 taaggctttgtttgggagtttggaggggaggggaggg 33406807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 562 - 597
Target Start/End: Complemental strand, 43189123 - 43189088
Alignment:
Q  562 ataaggctttgtttgggagtttggatgggaggggag 597  Q
    |||||||||||||||||||||||||||||| |||||    
T  43189123 ataaggctttgtttgggagtttggatgggaagggag 43189088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 565 - 599
Target Start/End: Complemental strand, 3658720 - 3658686
Alignment:
Q  565 aggctttgtttgggagtttggatgggaggggaggg 599  Q
    |||||||||||||||||||||| ||||||||||||    
T  3658720 aggctttgtttgggagtttggaggggaggggaggg 3658686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 565 - 599
Target Start/End: Complemental strand, 7667374 - 7667340
Alignment:
Q  565 aggctttgtttgggagtttggatgggaggggaggg 599  Q
    |||||||||||||||||||||| ||||||||||||    
T  7667374 aggctttgtttgggagtttggaggggaggggaggg 7667340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 569 - 599
Target Start/End: Complemental strand, 47276208 - 47276178
Alignment:
Q  569 tttgtttgggagtttggatgggaggggaggg 599  Q
    |||||||||||||||||||||||||||||||    
T  47276208 tttgtttgggagtttggatgggaggggaggg 47276178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 563 - 596
Target Start/End: Original strand, 23465816 - 23465849
Alignment:
Q  563 taaggctttgtttgggagtttggatgggagggga 596  Q
    |||||||||||||||||||||||| |||||||||    
T  23465816 taaggctttgtttgggagtttggaggggagggga 23465849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 563 - 596
Target Start/End: Original strand, 38505160 - 38505193
Alignment:
Q  563 taaggctttgtttgggagtttggatgggagggga 596  Q
    |||||||||||||||||||||||| |||||||||    
T  38505160 taaggctttgtttgggagtttggaggggagggga 38505193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 563 - 599
Target Start/End: Original strand, 7666980 - 7667016
Alignment:
Q  563 taaggctttgtttgggagtttggatgggaggggaggg 599  Q
    |||||||||||||||||||||||| |||| |||||||    
T  7666980 taaggctttgtttgggagtttggaggggaagggaggg 7667016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 563 - 599
Target Start/End: Complemental strand, 33872265 - 33872229
Alignment:
Q  563 taaggctttgtttgggagtttggatgggaggggaggg 599  Q
    |||||||||||||| ||||||||| ||||||||||||    
T  33872265 taaggctttgtttgcgagtttggaggggaggggaggg 33872229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 563 - 599
Target Start/End: Complemental strand, 38236057 - 38236021
Alignment:
Q  563 taaggctttgtttgggagtttggatgggaggggaggg 599  Q
    |||||||||||||||||||||||| |||| |||||||    
T  38236057 taaggctttgtttgggagtttggaggggaagggaggg 38236021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000009; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 563 - 600
Target Start/End: Complemental strand, 30312611 - 30312574
Alignment:
Q  563 taaggctttgtttgggagtttggatgggaggggagggt 600  Q
    |||||||||||||||||||||||| |||||||||||||    
T  30312611 taaggctttgtttgggagtttggaggggaggggagggt 30312574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 563 - 600
Target Start/End: Original strand, 38293759 - 38293796
Alignment:
Q  563 taaggctttgtttgggagtttggatgggaggggagggt 600  Q
    |||||||||||||||||||||||| |||||||||||||    
T  38293759 taaggctttgtttgggagtttggaggggaggggagggt 38293796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 563 - 600
Target Start/End: Original strand, 44137027 - 44137064
Alignment:
Q  563 taaggctttgtttgggagtttggatgggaggggagggt 600  Q
    |||||||||||||||||||||||| |||||||||||||    
T  44137027 taaggctttgtttgggagtttggaggggaggggagggt 44137064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 563 - 599
Target Start/End: Original strand, 18780252 - 18780288
Alignment:
Q  563 taaggctttgtttgggagtttggatgggaggggaggg 599  Q
    |||||||||||||||||||||||| ||||||||||||    
T  18780252 taaggctttgtttgggagtttggaggggaggggaggg 18780288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 565 - 600
Target Start/End: Complemental strand, 8411135 - 8411100
Alignment:
Q  565 aggctttgtttgggagtttggatgggaggggagggt 600  Q
    |||||||||||||||||||||| |||||||||||||    
T  8411135 aggctttgtttgggagtttggaggggaggggagggt 8411100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 564 - 598
Target Start/End: Original strand, 19382757 - 19382791
Alignment:
Q  564 aaggctttgtttgggagtttggatgggaggggagg 598  Q
    ||||||||||||||||||||||| |||||||||||    
T  19382757 aaggctttgtttgggagtttggaggggaggggagg 19382791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 562 - 599
Target Start/End: Original strand, 14008144 - 14008181
Alignment:
Q  562 ataaggctttgtttgggagtttggatgggaggggaggg 599  Q
    ||||||||||||||||||||||||| |||| |||||||    
T  14008144 ataaggctttgtttgggagtttggaggggaagggaggg 14008181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 563 - 596
Target Start/End: Complemental strand, 15803437 - 15803404
Alignment:
Q  563 taaggctttgtttgggagtttggatgggagggga 596  Q
    |||||||||||||||||||||||| |||||||||    
T  15803437 taaggctttgtttgggagtttggaggggagggga 15803404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 563 - 596
Target Start/End: Original strand, 16625630 - 16625663
Alignment:
Q  563 taaggctttgtttgggagtttggatgggagggga 596  Q
    |||||||||||||||||||||||| |||||||||    
T  16625630 taaggctttgtttgggagtttggaggggagggga 16625663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 565 - 594
Target Start/End: Original strand, 26599073 - 26599102
Alignment:
Q  565 aggctttgtttgggagtttggatgggaggg 594  Q
    ||||||||||||||||||||||||||||||    
T  26599073 aggctttgtttgggagtttggatgggaggg 26599102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 567 - 599
Target Start/End: Complemental strand, 8991168 - 8991136
Alignment:
Q  567 gctttgtttgggagtttggatgggaggggaggg 599  Q
    |||||||||||||||||||| ||||||||||||    
T  8991168 gctttgtttgggagtttggaggggaggggaggg 8991136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 563 - 599
Target Start/End: Complemental strand, 11950265 - 11950229
Alignment:
Q  563 taaggctttgtttgggagtttggatgggaggggaggg 599  Q
    ||||||||||||||| |||||||| ||||||||||||    
T  11950265 taaggctttgtttggaagtttggaggggaggggaggg 11950229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 563 - 591
Target Start/End: Original strand, 12963790 - 12963818
Alignment:
Q  563 taaggctttgtttgggagtttggatggga 591  Q
    |||||||||||||||||||||||||||||    
T  12963790 taaggctttgtttgggagtttggatggga 12963818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 563 - 595
Target Start/End: Original strand, 41655223 - 41655255
Alignment:
Q  563 taaggctttgtttgggagtttggatgggagggg 595  Q
    |||||||||||||||||||||||| ||||||||    
T  41655223 taaggctttgtttgggagtttggaggggagggg 41655255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000004; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 563 - 599
Target Start/End: Complemental strand, 3404784 - 3404748
Alignment:
Q  563 taaggctttgtttgggagtttggatgggaggggaggg 599  Q
    |||||||||||||||||||||||| ||||||||||||    
T  3404784 taaggctttgtttgggagtttggaggggaggggaggg 3404748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 565 - 600
Target Start/End: Original strand, 36906064 - 36906099
Alignment:
Q  565 aggctttgtttgggagtttggatgggaggggagggt 600  Q
    |||||||||||||||||||||| |||||||||||||    
T  36906064 aggctttgtttgggagtttggaggggaggggagggt 36906099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 563 - 599
Target Start/End: Original strand, 34148396 - 34148432
Alignment:
Q  563 taaggctttgtttgggagtttggatgggaggggaggg 599  Q
    |||||||||||||||||||||||| |||| |||||||    
T  34148396 taaggctttgtttgggagtttggaggggaagggaggg 34148432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 563 - 599
Target Start/End: Complemental strand, 36906454 - 36906418
Alignment:
Q  563 taaggctttgtttgggagtttggatgggaggggaggg 599  Q
    |||||||||||||||||||||||| |||| |||||||    
T  36906454 taaggctttgtttgggagtttggaggggaagggaggg 36906418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 563 - 599
Target Start/End: Original strand, 35700930 - 35700966
Alignment:
Q  563 taaggctttgtttgggagtttggatgggaggggaggg 599  Q
    |||||||||||||||||||||||| ||||||||||||    
T  35700930 taaggctttgtttgggagtttggaggggaggggaggg 35700966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 565 - 600
Target Start/End: Original strand, 32760634 - 32760669
Alignment:
Q  565 aggctttgtttgggagtttggatgggaggggagggt 600  Q
    |||||||||||||||||||||| |||||||||||||    
T  32760634 aggctttgtttgggagtttggaggggaggggagggt 32760669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 565 - 599
Target Start/End: Complemental strand, 38289573 - 38289539
Alignment:
Q  565 aggctttgtttgggagtttggatgggaggggaggg 599  Q
    |||||||||||||||||||||| ||||||||||||    
T  38289573 aggctttgtttgggagtttggaggggaggggaggg 38289539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 563 - 596
Target Start/End: Original strand, 4841524 - 4841557
Alignment:
Q  563 taaggctttgtttgggagtttggatgggagggga 596  Q
    |||||||||||||||||||||||| |||||||||    
T  4841524 taaggctttgtttgggagtttggaggggagggga 4841557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 562 - 599
Target Start/End: Complemental strand, 12229675 - 12229638
Alignment:
Q  562 ataaggctttgtttgggagtttggatgggaggggaggg 599  Q
    |||||||| |||||||||||||||| ||||||||||||    
T  12229675 ataaggctctgtttgggagtttggaggggaggggaggg 12229638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000004; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 563 - 599
Target Start/End: Original strand, 30121338 - 30121374
Alignment:
Q  563 taaggctttgtttgggagtttggatgggaggggaggg 599  Q
    |||||||||||||||||||||||| ||||||||||||    
T  30121338 taaggctttgtttgggagtttggaggggaggggaggg 30121374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 564 - 599
Target Start/End: Original strand, 38592851 - 38592886
Alignment:
Q  564 aaggctttgtttgggagtttggatgggaggggaggg 599  Q
    ||||||||||||||||||||||| ||||||||||||    
T  38592851 aaggctttgtttgggagtttggaggggaggggaggg 38592886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 565 - 600
Target Start/End: Complemental strand, 42583475 - 42583440
Alignment:
Q  565 aggctttgtttgggagtttggatgggaggggagggt 600  Q
    |||||||||||||||||||||| |||||||||||||    
T  42583475 aggctttgtttgggagtttggaggggaggggagggt 42583440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 565 - 599
Target Start/End: Complemental strand, 32859102 - 32859068
Alignment:
Q  565 aggctttgtttgggagtttggatgggaggggaggg 599  Q
    |||||||||||||||||||||| ||||||||||||    
T  32859102 aggctttgtttgggagtttggaggggaggggaggg 32859068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 562 - 600
Target Start/End: Complemental strand, 46312628 - 46312590
Alignment:
Q  562 ataaggctttgtttgggagtttggatgggaggggagggt 600  Q
    |||||| |||||||||||||||||| |||||||||||||    
T  46312628 ataaggttttgtttgggagtttggaggggaggggagggt 46312590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 565 - 599
Target Start/End: Original strand, 52620653 - 52620687
Alignment:
Q  565 aggctttgtttgggagtttggatgggaggggaggg 599  Q
    |||||||||||||||||||||| ||||||||||||    
T  52620653 aggctttgtttgggagtttggaggggaggggaggg 52620687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 566 - 599
Target Start/End: Complemental strand, 47714885 - 47714852
Alignment:
Q  566 ggctttgtttgggagtttggatgggaggggaggg 599  Q
    ||||||||||||||||||||| ||||||||||||    
T  47714885 ggctttgtttgggagtttggaggggaggggaggg 47714852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 563 - 599
Target Start/End: Original strand, 39499065 - 39499101
Alignment:
Q  563 taaggctttgtttgggagtttggatgggaggggaggg 599  Q
    |||||||||||||||||||||||| ||||| ||||||    
T  39499065 taaggctttgtttgggagtttggaagggagaggaggg 39499101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 564 - 600
Target Start/End: Complemental strand, 40119094 - 40119058
Alignment:
Q  564 aaggctttgtttgggagtttggatgggaggggagggt 600  Q
    ||||||||||||| ||||||||| |||||||||||||    
T  40119094 aaggctttgtttgcgagtttggaggggaggggagggt 40119058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 563 - 599
Target Start/End: Original strand, 44411970 - 44412006
Alignment:
Q  563 taaggctttgtttgggagtttggatgggaggggaggg 599  Q
    |||||||||||||||||||||||| |||| |||||||    
T  44411970 taaggctttgtttgggagtttggaggggaagggaggg 44412006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 563 - 599
Target Start/End: Complemental strand, 47789657 - 47789621
Alignment:
Q  563 taaggctttgtttgggagtttggatgggaggggaggg 599  Q
    |||||||||||||||||||||||| |||| |||||||    
T  47789657 taaggctttgtttgggagtttggaggggaagggaggg 47789621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 563 - 599
Target Start/End: Complemental strand, 49861101 - 49861065
Alignment:
Q  563 taaggctttgtttgggagtttggatgggaggggaggg 599  Q
    |||||||||||||||||||||||| |||| |||||||    
T  49861101 taaggctttgtttgggagtttggaggggaagggaggg 49861065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000004; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 564 - 600
Target Start/End: Complemental strand, 26757361 - 26757325
Alignment:
Q  564 aaggctttgtttgggagtttggatgggaggggagggt 600  Q
    ||||||||||||||||||||||| |||||||||||||    
T  26757361 aaggctttgtttgggagtttggaggggaggggagggt 26757325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 563 - 599
Target Start/End: Complemental strand, 43572162 - 43572126
Alignment:
Q  563 taaggctttgtttgggagtttggatgggaggggaggg 599  Q
    |||||||||||||||||||||||| ||||||||||||    
T  43572162 taaggctttgtttgggagtttggaggggaggggaggg 43572126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 563 - 598
Target Start/End: Complemental strand, 896701 - 896666
Alignment:
Q  563 taaggctttgtttgggagtttggatgggaggggagg 598  Q
    |||||||||||||||||||||||| |||||||||||    
T  896701 taaggctttgtttgggagtttggaggggaggggagg 896666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 565 - 600
Target Start/End: Complemental strand, 8156543 - 8156508
Alignment:
Q  565 aggctttgtttgggagtttggatgggaggggagggt 600  Q
    |||||||||||||||||||||| |||||||||||||    
T  8156543 aggctttgtttgggagtttggaggggaggggagggt 8156508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 565 - 600
Target Start/End: Original strand, 50476423 - 50476458
Alignment:
Q  565 aggctttgtttgggagtttggatgggaggggagggt 600  Q
    |||||||||||||||||||||| |||||||||||||    
T  50476423 aggctttgtttgggagtttggaggggaggggagggt 50476458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 563 - 596
Target Start/End: Complemental strand, 39509033 - 39509000
Alignment:
Q  563 taaggctttgtttgggagtttggatgggagggga 596  Q
    |||||||||||||||||||||||| |||||||||    
T  39509033 taaggctttgtttgggagtttggaggggagggga 39509000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 563 - 600
Target Start/End: Complemental strand, 42488833 - 42488796
Alignment:
Q  563 taaggctttgtttgggagtttggatgggaggggagggt 600  Q
    |||||||||||||||||||||||| || ||||||||||    
T  42488833 taaggctttgtttgggagtttggagggaaggggagggt 42488796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 563 - 596
Target Start/End: Original strand, 43036139 - 43036172
Alignment:
Q  563 taaggctttgtttgggagtttggatgggagggga 596  Q
    |||||||||||||||||||||||| |||||||||    
T  43036139 taaggctttgtttgggagtttggaggggagggga 43036172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 563 - 596
Target Start/End: Original strand, 49102791 - 49102824
Alignment:
Q  563 taaggctttgtttgggagtttggatgggagggga 596  Q
    |||||||||||||||||||||||| |||||||||    
T  49102791 taaggctttgtttgggagtttggaggggagggga 49102824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 563 - 596
Target Start/End: Complemental strand, 50587297 - 50587264
Alignment:
Q  563 taaggctttgtttgggagtttggatgggagggga 596  Q
    |||||||||||||||||||||||| |||||||||    
T  50587297 taaggctttgtttgggagtttggaagggagggga 50587264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 565 - 598
Target Start/End: Complemental strand, 51246772 - 51246739
Alignment:
Q  565 aggctttgtttgggagtttggatgggaggggagg 598  Q
    |||||||||||||||||||||| |||||||||||    
T  51246772 aggctttgtttgggagtttggaggggaggggagg 51246739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 565 - 597
Target Start/End: Original strand, 1278351 - 1278383
Alignment:
Q  565 aggctttgtttgggagtttggatgggaggggag 597  Q
    |||||||||||||||||||||| ||||||||||    
T  1278351 aggctttgtttgggagtttggaggggaggggag 1278383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 563 - 599
Target Start/End: Complemental strand, 9595826 - 9595790
Alignment:
Q  563 taaggctttgtttgggagtttggatgggaggggaggg 599  Q
    |||||||||||||||||||||||| |||| |||||||    
T  9595826 taaggctttgtttgggagtttggaggggaagggaggg 9595790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 563 - 599
Target Start/End: Original strand, 12293680 - 12293716
Alignment:
Q  563 taaggctttgtttgggagtttggatgggaggggaggg 599  Q
    |||||||||||||||||||||||| |||||| |||||    
T  12293680 taaggctttgtttgggagtttggaggggaggagaggg 12293716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 568 - 600
Target Start/End: Original strand, 14152580 - 14152612
Alignment:
Q  568 ctttgtttgggagtttggatgggaggggagggt 600  Q
    ||||||||||||||||||| |||||||||||||    
T  14152580 ctttgtttgggagtttggaggggaggggagggt 14152612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 568 - 600
Target Start/End: Complemental strand, 28773580 - 28773548
Alignment:
Q  568 ctttgtttgggagtttggatgggaggggagggt 600  Q
    ||||||||||||||||||| |||||||||||||    
T  28773580 ctttgtttgggagtttggaggggaggggagggt 28773548  T

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Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 563 - 599
Target Start/End: Complemental strand, 32299368 - 32299332
Alignment:
Q  563 taaggctttgtttgggagtttggatgggaggggaggg 599  Q
    |||||||||||||||||||||||| |||| |||||||    
T  32299368 taaggctttgtttgggagtttggaggggaagggaggg 32299332  T

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Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 563 - 599
Target Start/End: Complemental strand, 32300320 - 32300284
Alignment:
Q  563 taaggctttgtttgggagtttggatgggaggggaggg 599  Q
    |||||||||||||||||||||||| |||| |||||||    
T  32300320 taaggctttgtttgggagtttggaggggaagggaggg 32300284  T

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Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 563 - 599
Target Start/End: Complemental strand, 39179317 - 39179281
Alignment:
Q  563 taaggctttgtttgggagtttggatgggaggggaggg 599  Q
    |||||||||||||||||||||||| |||| |||||||    
T  39179317 taaggctttgtttgggagtttggaggggaagggaggg 39179281  T

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Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 563 - 599
Target Start/End: Complemental strand, 47905900 - 47905864
Alignment:
Q  563 taaggctttgtttgggagtttggatgggaggggaggg 599  Q
    |||||||||||||||||||||||| ||||||| ||||    
T  47905900 taaggctttgtttgggagtttggaggggagggaaggg 47905864  T

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Target: scaffold0006 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 565 - 599
Target Start/End: Original strand, 59672 - 59706
Alignment:
Q  565 aggctttgtttgggagtttggatgggaggggaggg 599  Q
    |||||||||||||||||||||| ||||||||||||    
T  59672 aggctttgtttgggagtttggaggggaggggaggg 59706  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000006; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 565 - 599
Target Start/End: Complemental strand, 2365806 - 2365772
Alignment:
Q  565 aggctttgtttgggagtttggatgggaggggaggg 599  Q
    |||||||||||||||||||||| ||||||||||||    
T  2365806 aggctttgtttgggagtttggaggggaggggaggg 2365772  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 563 - 600
Target Start/End: Original strand, 9104767 - 9104804
Alignment:
Q  563 taaggctttgtttgggagtttggatgggaggggagggt 600  Q
    |||||||||||||||||||||||| |||| ||||||||    
T  9104767 taaggctttgtttgggagtttggaagggatgggagggt 9104804  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 563 - 599
Target Start/End: Complemental strand, 5825597 - 5825561
Alignment:
Q  563 taaggctttgtttgggagtttggatgggaggggaggg 599  Q
    |||||||||||||||||||||||| |||| |||||||    
T  5825597 taaggctttgtttgggagtttggaggggaagggaggg 5825561  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 563 - 599
Target Start/End: Complemental strand, 24735147 - 24735111
Alignment:
Q  563 taaggctttgtttgggagtttggatgggaggggaggg 599  Q
    ||||| |||||||||||||||||| ||||||||||||    
T  24735147 taaggttttgtttgggagtttggaggggaggggaggg 24735111  T

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Target: scaffold0632 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0632
Description:

Target: scaffold0632; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 563 - 596
Target Start/End: Original strand, 1892 - 1925
Alignment:
Q  563 taaggctttgtttgggagtttggatgggagggga 596  Q
    |||||||||||||||||||||||| |||||||||    
T  1892 taaggctttgtttgggagtttggaagggagggga 1925  T

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Target: scaffold0245 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0245
Description:

Target: scaffold0245; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 565 - 597
Target Start/End: Original strand, 4028 - 4060
Alignment:
Q  565 aggctttgtttgggagtttggatgggaggggag 597  Q
    |||||||||||||||||||||| ||||||||||    
T  4028 aggctttgtttgggagtttggaggggaggggag 4060  T

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Target: scaffold0229 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 565 - 597
Target Start/End: Original strand, 4359 - 4391
Alignment:
Q  565 aggctttgtttgggagtttggatgggaggggag 597  Q
    |||||||||||||||||||||| ||||||||||    
T  4359 aggctttgtttgggagtttggaggggaggggag 4391  T

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