View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18982_low_100 (Length: 210)
Name: NF18982_low_100
Description: NF18982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18982_low_100 |
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Alignment Details
Target: chr6 (Bit Score: 129; Significance: 6e-67; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 18 - 196
Target Start/End: Original strand, 34696598 - 34696776
Alignment:
| Q |
18 |
ccttgaacatataaaatgataatgaatctaannnnnnnaaagatacaatcaaattaaggnnnnnnntttatgtgcatgatatgcattgtacaattatcag |
117 |
Q |
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| T |
34696598 |
ccttgaacatataaaatgataatgaatctaatttttttaaagatacaatcaaattaaggaaaaaaatttatgtgcaagatatgcattgtacaattatcag |
34696697 |
T |
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| Q |
118 |
ccactgtacactctaagacgactagtgatcctgtgtcgacagattggacaatgtcttaaccttgatccacaatctctgc |
196 |
Q |
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| T |
34696698 |
ccactgtacactctaagacgactagtgatcctgtgtcgacatattggacaatgtcttaaccttgatccacaatctctgc |
34696776 |
T |
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Target: chr2 (Bit Score: 129; Significance: 6e-67; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 18 - 196
Target Start/End: Original strand, 26994240 - 26994418
Alignment:
| Q |
18 |
ccttgaacatataaaatgataatgaatctaannnnnnnaaagatacaatcaaattaaggnnnnnnntttatgtgcatgatatgcattgtacaattatcag |
117 |
Q |
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| T |
26994240 |
ccttgaacatataaaatgataatgaatctaatttttttaaagatacaatcaaattaaggaaaaaaatttatgtgcaagatatgcattgtacaattatcag |
26994339 |
T |
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| Q |
118 |
ccactgtacactctaagacgactagtgatcctgtgtcgacagattggacaatgtcttaaccttgatccacaatctctgc |
196 |
Q |
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| T |
26994340 |
ccactgtacactctaagacgactagtgatcctgtgtcgacatattggacaatgtcttaaccttgatccacaatctctgc |
26994418 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 106 - 196
Target Start/End: Complemental strand, 27065779 - 27065688
Alignment:
| Q |
106 |
tacaattatcagccactgtacactctaagacgactagtgatcctgtgtcgacagattg-gacaatgtcttaaccttgatccacaatctctgc |
196 |
Q |
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||||||||| ||||||||||||||||||| ||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| |||| |
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| T |
27065779 |
tacaattataagccactgtacactctaagccgactagtgatcctgtgtcgacatattgtgacaatgtcttaaccttgatccacaatccctgc |
27065688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 127 - 196
Target Start/End: Complemental strand, 27014783 - 27014714
Alignment:
| Q |
127 |
actctaagacgactagtgatcctgtgtcgacagattggacaatgtcttaaccttgatccacaatctctgc |
196 |
Q |
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||||||||||||||||||||||| |||||| || ||||||| || ||| ||||||||||||||||||| |
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| T |
27014783 |
actctaagacgactagtgatcctcactcgacatataggacaatctcgtaatcttgatccacaatctctgc |
27014714 |
T |
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