View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18982_low_13 (Length: 586)
Name: NF18982_low_13
Description: NF18982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18982_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 480; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 480; E-Value: 0
Query Start/End: Original strand, 14 - 567
Target Start/End: Original strand, 33599428 - 33599983
Alignment:
| Q |
14 |
ttcacaactaagagaaagagtagctattggttcagctatatcatcaagcctacgcagttttggcaaatgattttacagatagaacaatatgcaagacaat |
113 |
Q |
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| T |
33599428 |
ttcacaactaagagaaagagtagccattggttcagctatatcatcaagcctacgcagttttggcaaatgattttacagatagaacaatatgcaagacaat |
33599527 |
T |
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| Q |
114 |
ataataataatagctcagaaagctattgagatcatcatgttttggaatgttgctcatgaaaatctcaaccaacattagccacacctgtgttatgccaaaa |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33599528 |
ataataataatagctcagaaagctattgagatcatcatgttttggaatgttactcatgaaaatctcaaccaacattagccacacctgtgttatgccaaaa |
33599627 |
T |
|
| Q |
214 |
cacacctaatagagacataaaaactagccnnnnnnngcacctaacagagacttaaaacaagtgctcctgctgtccaaaccatcccccaaaaacaggccct |
313 |
Q |
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| T |
33599628 |
cacacctaatagagacataaaaactagccaaaaaaagcacctaacagagacttaaaacaagtgctcctgctgtccaaaccatcccccaaaaacaggccct |
33599727 |
T |
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| Q |
314 |
ccccattgacttcatgatacaggtcgtgacgtgtttactgtttataaaataattgactatgattatttaaatttgaatgaccacatctctggatatcac- |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
33599728 |
ccccattgacttcatgatacaggtcgtgacgtgtttactgtttataaaataaatgactatgattatttaaatttgaatgaccacatctcttgatatcact |
33599827 |
T |
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| Q |
413 |
-nnnnnnnnaaaattacaaaccacctaatcaaaataatcatatataatttgaaattggaaatggaatggtcaattgcttataagtgcaagaagcttccaa |
511 |
Q |
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| T |
33599828 |
ttttttttttaaattacaaaccacctaatcaaaataatcatatataatttgaaattggaaatggaatggtcaattgcttataagtgcaagaagcttccaa |
33599927 |
T |
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| Q |
512 |
ttcccaaactcaaattatcttgaatttggaaaataagcaatttcagtgtctacatt |
567 |
Q |
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| T |
33599928 |
ttcccaaactcaaattatcttgaatttggaaaataagcaatttcagtgtctacatt |
33599983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 27 - 114
Target Start/End: Complemental strand, 44063173 - 44063090
Alignment:
| Q |
27 |
gaaagagtagctattggttcagctatatcatcaagcctacgcagttttggcaaatgattttacagatagaacaatatgcaagacaata |
114 |
Q |
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| T |
44063173 |
gaaagagcagctattggttcagctgtatcatcaagttta----gtttttgcaaatgatttcacagatagaacaatatggaagacaata |
44063090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 114 - 177
Target Start/End: Complemental strand, 44063071 - 44063008
Alignment:
| Q |
114 |
ataataataatagctcagaaagctattgagatcatcatgttttggaatgttgctcatgaaaatc |
177 |
Q |
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| T |
44063071 |
ataataacaatagctaagaaagctatcgggttcatcatgttctggaatgttgctcatgaaaatc |
44063008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 477 - 562
Target Start/End: Complemental strand, 45579872 - 45579788
Alignment:
| Q |
477 |
atggtcaattgcttataagtgcaagaagcttccaattcccaaactcaaattatcttgaatttggaaaataagcaatttcagtgtct |
562 |
Q |
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| T |
45579872 |
atggtcaattgcttataagtgcaagacacttcaaatttcctaactcaaattcacttgaa-ctagaaaataagcaatttcactgtct |
45579788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 371 - 464
Target Start/End: Complemental strand, 45579994 - 45579902
Alignment:
| Q |
371 |
tatgattatttaaatttgaatgaccacatctctggatatcacnnnnnnnnaaaattacaaaccacctaatcaaaataatcatata-taatttgaa |
464 |
Q |
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|||||||||||||||| ||| || |||||||||| |||||| |||||||||||||||||||||||||| |||||||| ||||||||| |
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| T |
45579994 |
tatgattatttaaattggaaggaacacatctctgaatatca--gttttttaaaattacaaaccacctaatcaaaatgatcatatattaatttgaa |
45579902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 100
Target Start/End: Original strand, 46723348 - 46723425
Alignment:
| Q |
23 |
aagagaaagagtagctattggttcagctatatcatcaagcctacgcagttttggcaaatgattttacagatagaacaa |
100 |
Q |
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||||||||||| | ||||||||||| |||||||| ||||||| | | |||||| ||||||| |||||| ||||||| |
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| T |
46723348 |
aagagaaagagcggttattggttcagttatatcattaagcctatgtaattttggtaaatgatagtacagacagaacaa |
46723425 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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