View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18982_low_16 (Length: 538)
Name: NF18982_low_16
Description: NF18982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18982_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 486; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 486; E-Value: 0
Query Start/End: Original strand, 15 - 519
Target Start/End: Complemental strand, 38285151 - 38284642
Alignment:
| Q |
15 |
atcacctaataaatcatgttaattgctggtgtagtgtgcatgagcaatgacatgaatattgatatattgtaggcaaaggtattgatggagataaaataca |
114 |
Q |
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| T |
38285151 |
atcacctaataaatcatgtgaattgctggtgtagtgtgcatgagcaatgacatgaatattgatatattgtaggcaaaggtattgatggagataaaataca |
38285052 |
T |
|
| Q |
115 |
tgcatggtgatgatgggtatgctataattagttgtacggtccaatccaagctttgcaatgcataaagtcggtcccatgtgtggacataaggatcaaatgg |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38285051 |
tgcatggtgatgatgggtatgctataattagttgtacggtccaatccaagctttgcaatgcataaagtcggtcccatgtgtggacataaggatcaaatgg |
38284952 |
T |
|
| Q |
215 |
acccacatttgagaggtttcttatgattttgtgtattttattgcactgggtcctgtgtgagctatgagccatgttcca-----agtcactttctccttcc |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
38284951 |
acccacatttgagaggtttcttatgattttgtgtattttattgcactgggtcctgtgtgagctatgagccatgttccagtgccagtcactttctccttcc |
38284852 |
T |
|
| Q |
310 |
ctctatctactatcaaatccaataattgagtccaaattaaaagggttgagatgctatatgataattttgtattttggcttgttggcttaactgagtggtg |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38284851 |
ctctatctactatcaaatccaataattgagtccaaattaaaagggttgagatgctatatgataattttgtattttggcttgttggcttaactgagtggtg |
38284752 |
T |
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| Q |
410 |
taagtgccccttacaacttaacttatcatcttttggaaaaatatggaagatattacattgcagttgcacatgtttgtgtgcactcatattgacctgaaga |
509 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38284751 |
taagtgccccttacaacttaacttatcatcttttggaaaaatatggaagatattacattgcagttgcacatgtttgtgtgcactcatattgacctgaaga |
38284652 |
T |
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| Q |
510 |
tcgtgacatt |
519 |
Q |
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| T |
38284651 |
tcgtgacatt |
38284642 |
T |
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