View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18982_low_20 (Length: 520)
Name: NF18982_low_20
Description: NF18982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18982_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-122; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 9 - 288
Target Start/End: Original strand, 34131748 - 34132035
Alignment:
| Q |
9 |
atcacagatatagagatccaaacatgaccaaataagtaataataaagaatgatccaaagtatttaaggtagactctcacattatcataaaatttagattg |
108 |
Q |
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|||||| || || ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34131748 |
atcacaaatgtaaagatccaaacatgaccaaataagtaataacaaagaatgatccaaagtatttaaggtagactctcacattatcataaaatttagattg |
34131847 |
T |
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| Q |
109 |
ggtctaactcaaa--------ttcaacttagacggtgtcggatactcaccacttatgaacaaattttgggtctataacgtccaatctgttaacttctatc |
200 |
Q |
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| T |
34131848 |
agtctaactcaaatccacaaattcaacttagacggtgttgaatactcaccacttatgaacaaattttgggtctatcacgtccaatctgttaacttctatc |
34131947 |
T |
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| Q |
201 |
taattcatacataactgtcatatttatagagatcaattgcaacaaattcccaagtcctaactactggacataattatttactatcaac |
288 |
Q |
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| T |
34131948 |
taattcatacataactgtcatatttatagagatcaattgcaacaaattcctaagtcctaactactggacataattatttactatcaac |
34132035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 281 - 504
Target Start/End: Original strand, 34133152 - 34133375
Alignment:
| Q |
281 |
ctatcaacacaacccaacatgagactttcaacaatcaatgaataatatattagtatgaatcaactacctgaattgtggaggatattgaggtgattgatta |
380 |
Q |
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| T |
34133152 |
ctatcaacacaacccaacatgagactttcaacgatcaatgaataatatattagtatgaatcaactacctgaattgtggaggatattgaggtgattgatta |
34133251 |
T |
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| Q |
381 |
gtccattgaataacaccatcatcatgttcatcagaactacgaggaactaaagtaggatcttgagaaagaaaatcaaacacttctttccagtctctaacat |
480 |
Q |
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| T |
34133252 |
gtccattgaataacaccatcatcatgttcatcagaactccgaggaactaatgtaggatcttgagaaagaaaatcaaacacttctttccagtctctaacat |
34133351 |
T |
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| Q |
481 |
ttttggtatgctctgtatcataat |
504 |
Q |
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| T |
34133352 |
ttttggtatgctctgtatcataat |
34133375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 349 - 501
Target Start/End: Original strand, 34143277 - 34143429
Alignment:
| Q |
349 |
tgaattgtggaggatattgaggtgattgattagtccattgaataacaccatcatcatgttcatcagaactacgaggaactaaagtaggatcttgagaaag |
448 |
Q |
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|||| |||||||| |||||||| ||| |||||||||| | | | || |||||| |||||||||||| | ||||||| |||||||| || | ||| || |
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| T |
34143277 |
tgaagtgtggagggtattgaggggatggattagtccagtaagtgacttgatcatcgtgttcatcagaattcagaggaaccaaagtagggtcattagagag |
34143376 |
T |
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| Q |
449 |
aaaatcaaacacttctttccagtctctaacatttttggtatgctctgtatcat |
501 |
Q |
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| T |
34143377 |
aaaatcaaacacttctttccagtctcttacattcttggtgtgctctgtatcat |
34143429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 342 - 504
Target Start/End: Original strand, 34137124 - 34137286
Alignment:
| Q |
342 |
aactacctgaattgtggaggatattgaggtgattgattagtccattgaataacaccatcatcatgttcatcagaactacgaggaactaaagtaggatctt |
441 |
Q |
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||||||||||| |||| ||| |||| || ||| |||||| ||||||||||| |||||| | |||||||||| | ||||||| ||||| ||||| | |
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| T |
34137124 |
aactacctgaagtgtgaagggaattgtggggatggattagaccattgaataaattgatcatcgttttcatcagaattcagaggaaccaaagtgggatcgt |
34137223 |
T |
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| Q |
442 |
gagaaagaaaatcaaacacttctttccagtctctaacatttttggtatgctctgtatcataat |
504 |
Q |
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| |||||||||| ||||||||||||||| |||||||||||||| || ||||||||||||| |
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| T |
34137224 |
tggcgagaaaatcaagcacttctttccagtccctaacatttttggtgtgttctgtatcataat |
34137286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 344 - 500
Target Start/End: Original strand, 34126942 - 34127098
Alignment:
| Q |
344 |
ctacctgaattgtggaggatattgaggtgattgattagtccattgaataacaccatcatcatgttcatcagaactacgaggaactaaagtaggatcttga |
443 |
Q |
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||||||||||| ||||||||| | ||| || |||||| |||||||||||| |||||||| ||||||| || | ||||||| ||||| |||||| |
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| T |
34126942 |
ctacctgaattttggaggatacttaggggacggattagaccattgaataacttgatcatcattttcatcacaattcagaggaaccaaagtgggatctctg |
34127041 |
T |
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| Q |
444 |
gaaagaaaatcaaacacttctttccagtctctaacatttttggtatgctctgtatca |
500 |
Q |
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| | |||||||||||||||| |||||| ||| ||||| ||||| |||||| ||||| |
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| T |
34127042 |
gcgaaaaaatcaaacacttctatccagtttcttacattcttggtgtgctctttatca |
34127098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 449 - 504
Target Start/End: Original strand, 12324008 - 12324063
Alignment:
| Q |
449 |
aaaatcaaacacttctttccagtctctaacatttttggtatgctctgtatcataat |
504 |
Q |
| |
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||||||||||||||| ||||| ||||||||||| || |||||||| || ||||||| |
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| T |
12324008 |
aaaatcaaacacttccttccaatctctaacattcttagtatgctcagtttcataat |
12324063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 449 - 504
Target Start/End: Original strand, 12375161 - 12375216
Alignment:
| Q |
449 |
aaaatcaaacacttctttccagtctctaacatttttggtatgctctgtatcataat |
504 |
Q |
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||||||||||||||| ||||| ||||||||||| || |||||||| || ||||||| |
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| T |
12375161 |
aaaatcaaacacttccttccaatctctaacattcttagtatgctcagtttcataat |
12375216 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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