View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18982_low_24 (Length: 464)
Name: NF18982_low_24
Description: NF18982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18982_low_24 |
 | |
|
| [»] scaffold1408 (1 HSPs) |
| | |
|
| [»] scaffold0428 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 446; Significance: 0; HSPs: 17)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 1 - 450
Target Start/End: Original strand, 33387758 - 33388207
Alignment:
| Q |
1 |
cttgatttggtcgtaacaagacctccattgagaatgactggaacactcattttgataggatgattgaaactcagtttcatattggcccatgaaaagcact |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33387758 |
cttgatttggtcgtaacaagacctccattgagaatgactggaacactcattttgataggatgattgaaactcagtttcatattggcccatgaaaagcact |
33387857 |
T |
|
| Q |
101 |
ctggatgaggttccattgtaaatactgcacaacatagaaagccaatgatattattgttattgtcatgcataataggcaatttgtctattagtattgaatc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33387858 |
ctggatgaggttccattgtaaatactgcacaacatagaaagccaatgatattattgttattgtcatgcataataggcaatttgtctattagtattgaatc |
33387957 |
T |
|
| Q |
201 |
acccatgctctgattgttgatccaactcggtatttcacttcctgtagtaacaatttgaatcgtatcaaaataggcagggtaggtttgtgggtttgcctta |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
33387958 |
acccatgctctgattgttgatccaactcggtatttcacttcctgtagtaacaatttgaatcgtatcaaaataggcagggtaggtttgtcggtttgcctta |
33388057 |
T |
|
| Q |
301 |
ataaattgtgtcatccatgaaaatgtcatgctactgcaacactccctatcacccagttttggacagttgaaaacgatcaatcctgtgatccacccaaact |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33388058 |
ataaattgtgtcatccatgaaaatgtcatgctactgcaacactccctatcacccagttttggacagttgaaaacgatcaatcctgtgatccacccaaact |
33388157 |
T |
|
| Q |
401 |
tatgcttgttctcacgatgatcccgcccaatagtggtaagagaaggaagt |
450 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33388158 |
tatgcttgttctcacgatgatcccgcccaatagtggtaagagaaggaagt |
33388207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 128 - 450
Target Start/End: Original strand, 33262357 - 33262673
Alignment:
| Q |
128 |
cacaacatagaaagccaatgatattattgttattgtcatgcataataggcaatttgtctattagtattgaatcacccatgctctgattgttgatccaact |
227 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||| || ||||| | ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33262357 |
cacaacatagaaagccaatgatattattgttattatcatgcataataggagtttggtctactggtattgaatcacccatgctctgattgttgatccaact |
33262456 |
T |
|
| Q |
228 |
cggtatttcacttcctgtagtaacaatttgaatcgtatcaaaataggcagggtaggtttgtgggtttgccttaataaattgtgtcatccatgaaaatgtc |
327 |
Q |
| |
|
||||||||| |||||| | |||||||||||| | ||| ||||| | |||||||| |||| ||| ||| | ||| ||||||||| |||||||||||||| |
|
|
| T |
33262457 |
tggtatttcatttcctggactaacaatttgaaactcatccaaataagtagggtaggattgttggtatgcttgaatgaattgtgtcgtccatgaaaatgtc |
33262556 |
T |
|
| Q |
328 |
atgctactgcaacactccctatcacccagttttggacagttgaaaacgatcaatcctgtgatccacccaaacttatgcttgttctcacgatgatcccgcc |
427 |
Q |
| |
|
||||||||||||| ||||| ||||||| ||||||||||||||||| || ||||||||| || ||||||| || ||||||||||||||||||| |
|
|
| T |
33262557 |
atgctactgcaacgttccctctcacccaattttggacagttgaaaatgaccaatcctgtattc------aacttatactccttctcacgatgatcccgcc |
33262650 |
T |
|
| Q |
428 |
caatagtggtaagagaaggaagt |
450 |
Q |
| |
|
|||||| |||| ||||||||||| |
|
|
| T |
33262651 |
caatagaggtaggagaaggaagt |
33262673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 120 - 386
Target Start/End: Original strand, 33304207 - 33304473
Alignment:
| Q |
120 |
aaatactgcacaacatagaaagccaatgatattattgttattgtcatgcataataggcaatttgtctattagtattgaatcacccatgctctgattgttg |
219 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| || ||||||| ||||||||||||||| ||||| ||||||| |
|
|
| T |
33304207 |
aaataccgcacaacatagaaagccaatgatataattgttattgtcatgcataataggagatcggtctatttgtattgaatcacccacgctcttattgttg |
33304306 |
T |
|
| Q |
220 |
atccaactcggtatttcacttcctgtagtaacaatttgaatcgtatcaaaataggcagggtaggtttgtgggtttgccttaataaattgtgtcatccatg |
319 |
Q |
| |
|
|||||| | ||||||||| |||||| |||||||||||||||| |||||| | | |||||||| ||||| |||||||| ||| |||||||||| ||||| |
|
|
| T |
33304307 |
atccaaattggtatttcatttcctggagtaacaatttgaatccaatcaaaggacgtagggtaggattgtgagtttgcctcaatgaattgtgtcaaccatg |
33304406 |
T |
|
| Q |
320 |
aaaatgtcatgctactgcaacactccctatcacccagttttggacagttgaaaacgatcaatcctgt |
386 |
Q |
| |
|
||||||||||||||||||||| ||||| ||||||| ||||||||||||||||| || ||||||||| |
|
|
| T |
33304407 |
aaaatgtcatgctactgcaacgttccctctcacccaattttggacagttgaaaatgaacaatcctgt |
33304473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 113 - 385
Target Start/End: Complemental strand, 33644832 - 33644560
Alignment:
| Q |
113 |
ccattgtaaatactgcacaacatagaaagccaatgatattattgttattgtcatgcataataggcaatttgtctattagtattgaatcacccatgctctg |
212 |
Q |
| |
|
|||| ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| ||| ||||||| ||||||||| ||||| || || |
|
|
| T |
33644832 |
ccatggtaaatactgcacaacatacaaatccaatgatattattgttattgtcatgcataataggagattcgtctatttgtattgaataacccacactttg |
33644733 |
T |
|
| Q |
213 |
attgttgatccaactcggtatttcacttcctgtagtaacaatttgaatcgtatcaaaataggcagggtaggtttgtgggtttgccttaataaattgtgtc |
312 |
Q |
| |
|
||||||||||||||| |||||||||||||||| ||| ||||||||| || ||||||| |||| ||||||| |||| ||||||||| ||| |||||| || |
|
|
| T |
33644732 |
attgttgatccaacttggtatttcacttcctggagttacaatttgagtcctatcaaagtaggttgggtaggattgtaggtttgcctgaatgaattgtatc |
33644633 |
T |
|
| Q |
313 |
atccatgaaaatgtcatgctactgcaacactccctatcacccagttttggacagttgaaaacgatcaatcctg |
385 |
Q |
| |
|
|||||||||||||||||||| ||||||| ||||| ||||||| ||||| ||||||||||| || |||||||| |
|
|
| T |
33644632 |
atccatgaaaatgtcatgctcctgcaacgttccctctcacccaattttgaacagttgaaaatgaccaatcctg |
33644560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 128 - 386
Target Start/End: Complemental strand, 28870446 - 28870188
Alignment:
| Q |
128 |
cacaacatagaaagccaatgatattattgttattgtcatgcataataggcaatttgtctattagtattgaatcacccatgctctgattgttgatccaact |
227 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||| |||||||| ||| ||||||| |||||||| ||||||||||||||||||| |||||||| |
|
|
| T |
28870446 |
cacaacatacaaagccaatgatattattgttattgtcatttataataggagattcgtctatttgtattgaaccacccatgctctgattgttaatccaact |
28870347 |
T |
|
| Q |
228 |
cggtatttcacttcctgtagtaacaatttgaatcgtatcaaaataggcagggtaggtttgtgggtttgccttaataaattgtgtcatccatgaaaatgtc |
327 |
Q |
| |
|
|||||||||||||||| ||||||||| | || || ||| |||||| || |||||| |||| ||| |||| ||| |||||| ||||||||||||||| | |
|
|
| T |
28870346 |
tggtatttcacttcctggagtaacaatattaaacgcatccaaatagacaaggtaggattgtcggtatgcccgaatgaattgtttcatccatgaaaatgcc |
28870247 |
T |
|
| Q |
328 |
atgctactgcaacactccctatcacccagttttggacagttgaaaacgatcaatcctgt |
386 |
Q |
| |
|
||||||| |||| ||||| ||||| | |||||||||||||||| |||||| ||||| |
|
|
| T |
28870246 |
atgctacaacaacgttccctctcacctaaatttggacagttgaaaatgatcaaacctgt |
28870188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 120 - 450
Target Start/End: Complemental strand, 31563109 - 31562782
Alignment:
| Q |
120 |
aaatactgcacaacatagaaagccaatgatattattgttattgtcatgcataataggcaatttgtctattagtattgaatcacccatgctctgattgttg |
219 |
Q |
| |
|
||||||||||||||||| |||||||||||||| |||| |||||||||||||| ||| | |||||| ||||||||||||||||||| ||||||||| |
|
|
| T |
31563109 |
aaatactgcacaacatacaaagccaatgatatcattgatattgtcatgcataggaggagagaactctattggtattgaatcacccatgctatgattgttg |
31563010 |
T |
|
| Q |
220 |
atccaactcggtatttcacttcctgtagtaacaatttgaatcgtatcaaaataggcagggtaggtttgtgggtttgccttaataaattgtgtcatccatg |
319 |
Q |
| |
|
|||||| |||||||||||||||||| | |||||| |||| | ||| |||||||||||||||| ||||| | ||||||||| ||||||| |||||||| |
|
|
| T |
31563009 |
atccaattcggtatttcacttcctggaacaacaatatgaaactcatccaaataggcagggtaggagtgtggatatgccttaatgaattgtgccatccatg |
31562910 |
T |
|
| Q |
320 |
aaaatgtcatgctactgcaacactccctatcac------ccagttttggacagttgaaaacgatcaatcctgtgatccacccaaacttatgcttgttctc |
413 |
Q |
| |
|
||||||||||||| |||||| |||||| |||| ||| ||| |||||||| |||| || ||||||||| |||||| || |||||||| |
|
|
| T |
31562909 |
aaaatgtcatgctcctgcaatgctccctctcactctcagccaatttcggacagttaaaaatgaccaatcctgtagtccacc-------at--ttgttctc |
31562819 |
T |
|
| Q |
414 |
acgatgatcccgcccaatagtggtaagagaaggaagt |
450 |
Q |
| |
|
|||| |||||||||||||||||||| ||||||||||| |
|
|
| T |
31562818 |
acgacgatcccgcccaatagtggtaggagaaggaagt |
31562782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 121 - 386
Target Start/End: Original strand, 9166485 - 9166741
Alignment:
| Q |
121 |
aatactgcacaacatagaaagccaatgatattattgttattgtcatgcataataggcaatttgtctattagtattgaatcacccatgctctgattgttga |
220 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | ||||||| |||| ||| || ||| |||| ||||||||| |
|
|
| T |
9166485 |
aatactgcacaacatacaaagccaatgatattattgttattgtcatgcataataggagttaggtctattggtatcgaaccatccacgctccgattgttga |
9166584 |
T |
|
| Q |
221 |
tccaactcggtatttcacttcctgtagtaacaatttgaatcgtatcaaaataggcagggtaggtttgtgggtttgccttaataaattgtgtcatccatga |
320 |
Q |
| |
|
||||||| ||||||||| |||||| ||||||||||||||| ||||||| || || | |||||||||||| ||||||||| |||||||||| |
|
|
| T |
9166585 |
tccaacttggtatttcaattcctggcgtaacaatttgaatcctatcaaa---------gtgggatggtgggtttgcctgaataaattgcatcatccatga |
9166675 |
T |
|
| Q |
321 |
aaatgtcatgctactgcaacactccctatcacccagttttggacagttgaaaacgatcaatcctgt |
386 |
Q |
| |
|
||||||||||||||||||| ||| |||||| || || |||||||||||||| || ||||||||| |
|
|
| T |
9166676 |
aaatgtcatgctactgcaatgttccttatcactcaattctggacagttgaaaatgaccaatcctgt |
9166741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 124 - 373
Target Start/End: Original strand, 33285321 - 33285573
Alignment:
| Q |
124 |
actgcacaacatagaaagccaatgatattattgttattgtcatgcataataggcaatttgtctattagtattgaatcacccatgctctgattgttgatcc |
223 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||| || |||||||| |||||||| ||||| ||||||||| || |||| |
|
|
| T |
33285321 |
actgcacaacatacaaagccaatgatattattgttattgtcatgcataataggagatctgtctattggtattgaactacccacgctctgattattaatcc |
33285420 |
T |
|
| Q |
224 |
aactcggtatttcacttcctgtagtaacaatttgaatcgtatcaaaatag---gcagggtaggtttgtgggtttgccttaataaattgtgtcatccatga |
320 |
Q |
| |
|
|||| |||||||||||||||| ||||||||| |||||| ||||| || |||||||| ||| ||| ||||| || |||||| |||||||||| |
|
|
| T |
33285421 |
aacttggtatttcacttcctggagtaacaatatgaatcccttcaaataaggacgcagggtaaaagtgttggtatgcctggatgaattgtatcatccatga |
33285520 |
T |
|
| Q |
321 |
aaatgtcatgctactgcaacactccctatcacccagttttggacagttgaaaa |
373 |
Q |
| |
|
||||| |||||||||||||| ||||| ||||| | ||||||||||||||||| |
|
|
| T |
33285521 |
aaatgccatgctactgcaacgttccctttcacctaattttggacagttgaaaa |
33285573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 113 - 385
Target Start/End: Original strand, 33057294 - 33057554
Alignment:
| Q |
113 |
ccattgtaaatactgcacaacatagaaagccaatgatattattgttattgtcatgcataataggcaatttgtctattagtattgaatcacccatgctctg |
212 |
Q |
| |
|
|||| |||||| |||||||||||| || |||||||||||||||| |||||||||| ||||||| || ||||||| |||||||| |||||| ||||| |
|
|
| T |
33057294 |
ccatcgtaaatgctgcacaacatacaataccaatgatattattgtcattgtcatgcctaataggagatcggtctattgctattgaataacccatcctctg |
33057393 |
T |
|
| Q |
213 |
attgttgatccaactcggtatttcacttcctgtagtaacaatttgaatcgtatcaaaataggcagggtaggtttgtgggtttgccttaataaattgtgtc |
312 |
Q |
| |
|
||||||||||||||| |||||||||||||||| | |||| ||||||||| ||| || ||| | |||||||||||||||| |||||| || |
|
|
| T |
33057394 |
attgttgatccaacttggtatttcacttcctggattaactatttgaatc---tcagaagaggaa---------cgtgggtttgccttaatgaattgtttc |
33057481 |
T |
|
| Q |
313 |
atccatgaaaatgtcatgctactgcaacactccctatcacccagttttggacagttgaaaacgatcaatcctg |
385 |
Q |
| |
|
|||||| ||| ||||||||| |||||| ||||| ||||||| ||||||||||||||||| || |||||||| |
|
|
| T |
33057482 |
atccataaaagtgtcatgctcctgcaatgttccctctcacccaattttggacagttgaaaatgagcaatcctg |
33057554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 128 - 384
Target Start/End: Original strand, 33409709 - 33409959
Alignment:
| Q |
128 |
cacaacatagaaagccaatgatattattgttattgtcatgcataataggcaatttgtctattagtattgaatcacccatgctctgattgttgatccaact |
227 |
Q |
| |
|
|||||| || ||||||||| ||||||||||||||||||| |||| ||| ||| || ||| ||||||| |||||| ||||||||||||||||||||| |
|
|
| T |
33409709 |
cacaacttacaaagccaataatattattgttattgtcatttataacaggagattcatcaattgatattgaagcacccacgctctgattgttgatccaact |
33409808 |
T |
|
| Q |
228 |
cggtatttcacttcctgtagtaacaatttgaatcgtatcaaaataggcagggtaggtttgtgggtttgccttaataaattgtgtcatccatgaaaatgtc |
327 |
Q |
| |
|
|||||||||||||||| ||| |||||||||| || || | || || |||| ||||||||| ||| || |||| ||||||||||| ||| |
|
|
| T |
33409809 |
tggtatttcacttcctggagttacaatttgaagcgccgacaatt------tgttgggttgttggtttgcctgaatgaaatgtgccatccatgaaattgtg |
33409902 |
T |
|
| Q |
328 |
atgctactgcaacactccctatcacccagttttggacagttgaaaacgatcaatcct |
384 |
Q |
| |
|
||||||||||||| ||||| ||| ||| ||||||||||||||||| || ||||||| |
|
|
| T |
33409903 |
atgctactgcaacgttccctctcaaccaattttggacagttgaaaatgaacaatcct |
33409959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 184 - 386
Target Start/End: Original strand, 33271582 - 33271781
Alignment:
| Q |
184 |
tctattagtattgaatcacccatgctctgattgttgatccaactcggtatttcacttcctgtagtaacaatttgaatcgtatcaaaataggcagggtagg |
283 |
Q |
| |
|
|||||| |||| |||||||||||||||||||||||||||||||| |||||||||||||||| ||| | ||| |||| | || ||| || | |
|
|
| T |
33271582 |
tctattggtatcgaatcacccatgctctgattgttgatccaacttggtatttcacttcctggagttataatatgaaactcattcaaa---------taag |
33271672 |
T |
|
| Q |
284 |
tttgtgggtttgccttaataaattgtgtcatccatgaaaatgtcatgctactgcaacactccctatcac------ccagttttggacagttgaaaacgat |
377 |
Q |
| |
|
||| ||||||||| |||| |||||| |||||||||||||||||| ||||||||||| ||||| |||| ||| ||||||||||||||||| || |
|
|
| T |
33271673 |
attgcgggtttgccataatgaattgtatcatccatgaaaatgtcaagctactgcaacgttccctctcacagtcagccaattttggacagttgaaaatgac |
33271772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 113 - 385
Target Start/End: Original strand, 33398788 - 33399042
Alignment:
| Q |
113 |
ccattgtaaatactgcacaacatagaaagccaatgatattattgttattgtcatgcataataggcaatttgtctattagtattgaatcacccatgctctg |
212 |
Q |
| |
|
|||| ||||||||||||||||||| |||| | | | | ||||||||| ||||||||| ||| || ||||||| ||||||||||||||| | ||| |
|
|
| T |
33398788 |
ccatggtaaatactgcacaacatacaaagtaatggctctgattgttattatcatgcatagcaggagataggtctatttgtattgaatcacccacacactg |
33398887 |
T |
|
| Q |
213 |
attgttgatccaactcggtatttcacttcctgtagtaacaatttgaatcgtatcaaaataggcagggtaggtttgtgggtttgccttaataaattgtgtc |
312 |
Q |
| |
|
||||||||||||||| |||||||||||||||| | ||||||||||| || || |||||| || ||| ||| |||||| || |
|
|
| T |
33398888 |
attgttgatccaacttggtatttcacttcctggaataacaatttgagaggt------------------ggattgtggattggccagaatgaattgtatc |
33398969 |
T |
|
| Q |
313 |
atccatgaaaatgtcatgctactgcaacactccctatcacccagttttggacagttgaaaacgatcaatcctg |
385 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| ||||||| ||||| ||||||||||| || |||||||| |
|
|
| T |
33398970 |
atccatgaaaatgtcatgctactgcaacgttccctctcacccaattttgaacagttgaaaatgaccaatcctg |
33399042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 219 - 340
Target Start/End: Original strand, 33358714 - 33358839
Alignment:
| Q |
219 |
gatccaactcggtatttcacttcctgtagtaacaatttgaatcgtatcaaaataggcagggtaggtttgtgggtttgcc----ttaataaattgtgtcat |
314 |
Q |
| |
|
||||||||| | ||||||||||||| |||||| |||||||| ||| ||||||| ||||||||| | ||||||||||| | ||| |||||| |||| |
|
|
| T |
33358714 |
gatccaacttagcatttcacttcctggagtaactatttgaatgctatgaaaatagtcagggtaggatggtgggtttgccagaatgaatgaattgtttcat |
33358813 |
T |
|
| Q |
315 |
ccatgaaaatgtcatgctactgcaac |
340 |
Q |
| |
|
|||||||| ||||||||||||||||| |
|
|
| T |
33358814 |
ccatgaaagtgtcatgctactgcaac |
33358839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 33358519 - 33358571
Alignment:
| Q |
1 |
cttgatttggtcgtaacaagacctccattgagaatgactggaacactcatttt |
53 |
Q |
| |
|
|||||||||| ||||| |||||||||||||||||| ||||||||||||||||| |
|
|
| T |
33358519 |
cttgatttgggcgtaataagacctccattgagaattactggaacactcatttt |
33358571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 120 - 176
Target Start/End: Original strand, 33358656 - 33358712
Alignment:
| Q |
120 |
aaatactgcacaacatagaaagccaatgatattattgttattgtcatgcataatagg |
176 |
Q |
| |
|
||||||||||||||||| ||| ||||||| ||||||||||||||||||| ||||||| |
|
|
| T |
33358656 |
aaatactgcacaacatacaaaaccaatgacattattgttattgtcatgcctaatagg |
33358712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 33304082 - 33304116
Alignment:
| Q |
1 |
cttgatttggtcgtaacaagacctccattgagaat |
35 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||| |
|
|
| T |
33304082 |
cttgatttggtcataacaagacctccattgagaat |
33304116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 33644962 - 33644916
Alignment:
| Q |
1 |
cttgatttggtcgtaacaagacctccattgagaatgactggaacact |
47 |
Q |
| |
|
|||||||||||||||| |||||| |||| |||||| ||||||||||| |
|
|
| T |
33644962 |
cttgatttggtcgtaataagaccaccatcgagaattactggaacact |
33644916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1408 (Bit Score: 133; Significance: 6e-69; HSPs: 1)
Name: scaffold1408
Description:
Target: scaffold1408; HSP #1
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 120 - 384
Target Start/End: Original strand, 367 - 631
Alignment:
| Q |
120 |
aaatactgcacaacatagaaagccaatgatattattgttattgtcatgcataataggcaatttgtctattagtattgaatcacccatgctctgattgttg |
219 |
Q |
| |
|
||||||||||||| ||| |||||||||||||||||| ||||||||||| |||| ||| ||| |||||||||||||||| |||||||||||||||||||| |
|
|
| T |
367 |
aaatactgcacaaaatacaaagccaatgatattattcttattgtcatgtataacaggagattcgtctattagtattgaaccacccatgctctgattgttg |
466 |
T |
|
| Q |
220 |
atccaactcggtatttcacttcctgtagtaacaatttgaatcgtatcaaaataggcagggtaggtttgtgggtttgccttaataaattgtgtcatccatg |
319 |
Q |
| |
|
||||| || |||||||||||||||| |||||||||||||| | || ||||| | | ||||| |||| ||||||||| ||| |||||| ||||||||| |
|
|
| T |
467 |
atccagcttggtatttcacttcctggagtaacaatttgaagctcatacaaatacggaccgtaggattgttggtttgcctgaatgaattgtttcatccatg |
566 |
T |
|
| Q |
320 |
aaaatgtcatgctactgcaacactccctatcacccagttttggacagttgaaaacgatcaatcct |
384 |
Q |
| |
|
||||||| |||||||| ||||| ||||| ||||||| ||||||||||||||||| || ||||||| |
|
|
| T |
567 |
aaaatgttatgctactacaacattccctctcacccaattttggacagttgaaaatgaccaatcct |
631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0428 (Bit Score: 133; Significance: 6e-69; HSPs: 1)
Name: scaffold0428
Description:
Target: scaffold0428; HSP #1
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 120 - 384
Target Start/End: Original strand, 6113 - 6377
Alignment:
| Q |
120 |
aaatactgcacaacatagaaagccaatgatattattgttattgtcatgcataataggcaatttgtctattagtattgaatcacccatgctctgattgttg |
219 |
Q |
| |
|
||||||||||||| ||| |||||||||||||||||| ||||||||||| |||| ||| ||| |||||||||||||||| |||||||||||||||||||| |
|
|
| T |
6113 |
aaatactgcacaaaatacaaagccaatgatattattcttattgtcatgtataacaggagattcgtctattagtattgaaccacccatgctctgattgttg |
6212 |
T |
|
| Q |
220 |
atccaactcggtatttcacttcctgtagtaacaatttgaatcgtatcaaaataggcagggtaggtttgtgggtttgccttaataaattgtgtcatccatg |
319 |
Q |
| |
|
||||| || |||||||||||||||| |||||||||||||| | || ||||| | | ||||| |||| ||||||||| ||| |||||| ||||||||| |
|
|
| T |
6213 |
atccagcttggtatttcacttcctggagtaacaatttgaagctcatacaaatacggaccgtaggattgttggtttgcctgaatgaattgtttcatccatg |
6312 |
T |
|
| Q |
320 |
aaaatgtcatgctactgcaacactccctatcacccagttttggacagttgaaaacgatcaatcct |
384 |
Q |
| |
|
||||||| |||||||| ||||| ||||| ||||||| ||||||||||||||||| || ||||||| |
|
|
| T |
6313 |
aaaatgttatgctactacaacattccctctcacccaattttggacagttgaaaatgaccaatcct |
6377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 100; Significance: 3e-49; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 120 - 386
Target Start/End: Complemental strand, 31472835 - 31472566
Alignment:
| Q |
120 |
aaatactgcacaacatagaaagccaatgatattattgttattgtcatgcataataggcaatttgtctattagtattgaatcacccatgctctgattgttg |
219 |
Q |
| |
|
||||||| ||||||||| | | |||||||||||||||||||||||||||||||| || || ||||| | |||| ||||||||| || ||||||||||| |
|
|
| T |
31472835 |
aaatactacacaacatatacaaccaatgatattattgttattgtcatgcataatgggagatgagtctaatcgtatcgaatcacccttgttctgattgttg |
31472736 |
T |
|
| Q |
220 |
atccaactcggtatttcacttcctgtagtaacaatttgaatcgtatcaaaataggcagggtaggtttgtgggtttgccttaataaattgtgtcatccatg |
319 |
Q |
| |
|
| |||||| |||||||||||||||| ||||||||| ||||| ||||| || || ||||| ||| |||||| ||||||| ||| | |||| ||||||||| |
|
|
| T |
31472735 |
aaccaacttggtatttcacttcctggagtaacaatctgaattatatcataacagtcagggaaggattgtggatttgcctgaatgagttgtatcatccatg |
31472636 |
T |
|
| Q |
320 |
aaaatgtcatgctactgcaaca---ctccctatcacccagttttggacagttgaaaacgatcaatcctgt |
386 |
Q |
| |
|
||||||||||| || ||||||| ||||| ||||||| || ||||||||||||| || ||||||||| |
|
|
| T |
31472635 |
aaaatgtcatgttagtgcaacaatgttccctctcacccaaattaggacagttgaaaatgagcaatcctgt |
31472566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 120 - 384
Target Start/End: Complemental strand, 31479293 - 31479029
Alignment:
| Q |
120 |
aaatactgcacaacatagaaagccaatgatattattgttattgtcatgcataataggcaatttgtctattagtattgaatcacccatgctctgattgttg |
219 |
Q |
| |
|
||||||| ||||||||| | |||||| |||||||||||||||||| |||||||| || | |||||| ||||| ||| |||| |||||||||||||| |
|
|
| T |
31479293 |
aaatactacacaacatacacagccaacgatattattgttattgtcgtgcataatcggagaagaatctattcgtattaaattacccttgctctgattgttg |
31479194 |
T |
|
| Q |
220 |
atccaactcggtatttcacttcctgtagtaacaatttgaatcgtatcaaaataggcagggtaggtttgtgggtttgccttaataaattgtgtcatccatg |
319 |
Q |
| |
|
| |||||| || |||||||| |||| |||||||||||||| | ||||| | || || || || |||| ||||||||| ||| |||||| ||||||||| |
|
|
| T |
31479193 |
aaccaacttggcatttcactacctggagtaacaatttgaaccctatcagaggagtcatgggagaattgtcggtttgcctgaatgaattgtatcatccatg |
31479094 |
T |
|
| Q |
320 |
aaaatgtcatgctactgcaacactccctatcacccagttttggacagttgaaaacgatcaatcct |
384 |
Q |
| |
|
|||||||||||||||| |||| ||| | ||||||| ||| ||||||||||||| || ||||||| |
|
|
| T |
31479093 |
aaaatgtcatgctactccaacgttccgtttcacccaatttaggacagttgaaaatgaacaatcct |
31479029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 104 - 261
Target Start/End: Complemental strand, 31499356 - 31499199
Alignment:
| Q |
104 |
gatgaggttccattgtaaatactgcacaacatagaaagccaatgatattattgttattgtcatgcataataggcaatttgtctattagtattgaatcacc |
203 |
Q |
| |
|
|||||||| |||| | ||||||||||||||||| |||||||||||||||||||||||||||||| ||||| || || ||||||| ||||||||||||| |
|
|
| T |
31499356 |
gatgaggtgccatagaaaatactgcacaacatacaaagccaatgatattattgttattgtcatggataatgggagatgagtctattcgtattgaatcacc |
31499257 |
T |
|
| Q |
204 |
catgctctgattgttgatccaactcggtatttcacttcctgtagtaacaatttgaatc |
261 |
Q |
| |
|
| |||||||||| || | |||||| | |||||||||||||| ||||||||| |||||| |
|
|
| T |
31499256 |
cttgctctgattcttaaaccaacttgatatttcacttcctggagtaacaatatgaatc |
31499199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 107 - 373
Target Start/End: Complemental strand, 31504485 - 31504225
Alignment:
| Q |
107 |
gaggttccattgtaaatactgcacaacatagaaagccaatgatattattgttattgtcatgcataataggcaatttgtctattagtattgaatcacccat |
206 |
Q |
| |
|
|||||||||| | ||||||| ||||||||| | | |||||||||||||| ||| ||||||||||| | || ||||||| |||| || |||| | |
|
|
| T |
31504485 |
gaggttccatggaaaatactacacaacatacacaaccaatgatattatttttaaagtcatgcataagac-ca----gtctatttgtatggagcgaccctt |
31504391 |
T |
|
| Q |
207 |
gctctgattgttgatccaactcggtatttcacttcctgtagtaacaatttgaatcgtatcaaaataggcagggtaggtttgtgggtttgccttaataaat |
306 |
Q |
| |
|
||||| |||||||| |||||| ||||||||| |||| | |||||| ||| ||||| || ||| ||| | | ||| |||||||||||||||||| ||| |
|
|
| T |
31504390 |
gctctaattgttgaaccaacttggtatttcatttccaggagtaacgatt-gaatcacatgaaagtagtcggatgaggattgtgggtttgccttaatgaat |
31504292 |
T |
|
| Q |
307 |
tgtgtcatccatgaaaatgtcatgctactgcaacactccctatcacccagttttggacagttgaaaa |
373 |
Q |
| |
|
||| ||||||||||||||||||| ||| || | || ||||| ||| ||| ||| ||||||||||||| |
|
|
| T |
31504291 |
tgtatcatccatgaaaatgtcattctaatgtagcattccctctcatccaatttaggacagttgaaaa |
31504225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 206 - 373
Target Start/End: Original strand, 31148106 - 31148264
Alignment:
| Q |
206 |
tgctctgattgttgatccaactcggtatttcacttcctgtagtaacaatttgaatcgtatcaaaataggcagggtaggtttgtgggtttgccttaataaa |
305 |
Q |
| |
|
||||||||||||||| |||||| |||||||||||||| | |||||||||||||||| || ||| ||| ||||||||| ||| ||| | |
|
|
| T |
31148106 |
tgctctgattgttgaaccaacttggtatttcacttcccggagtaacaatttgaatcacat---------cagatgaggattgtgggttcgcccgaatgag |
31148196 |
T |
|
| Q |
306 |
ttgtgtcatccatgaaaatgtcatgctactgcaacactccctatcacccagttttggacagttgaaaa |
373 |
Q |
| |
|
|||| |||||||||||||| |||||||| | ||||| ||||| ||||||| ||| ||||||||||||| |
|
|
| T |
31148197 |
ttgtatcatccatgaaaatatcatgctattccaacattccctctcacccaatttaggacagttgaaaa |
31148264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 192 - 384
Target Start/End: Original strand, 31157018 - 31157213
Alignment:
| Q |
192 |
tattgaatcacccatgctctgattgttgatccaactcggtatttcacttcctgtagtaacaatttgaatcgtatcaaaataggc---agggtaggtttgt |
288 |
Q |
| |
|
||||||||||||| |||||||||||||| |||| | |||||||||||||| | | ||||||||| ||| | || ||||| || | ||| |||| |
|
|
| T |
31157018 |
tattgaatcaccctcgctctgattgttgaaccaaattggtatttcacttccaggaataacaattttaatgatgtcttcataggagaaagtggagggttgt |
31157117 |
T |
|
| Q |
289 |
gggtttgccttaataaattgtgtcatccatgaaaatgtcatgctactgcaacactccctatcacccagttttggacagttgaaaacgatcaatcct |
384 |
Q |
| |
|
| |||||| ||| |||||| ||||||||||||||| ||||||| ||||| || || ||||||| ||| ||||||||||||| || ||||||| |
|
|
| T |
31157118 |
tgtcttgcctgaatcaattgtatcatccatgaaaatgccatgctattgcaatcttcactctcacccaatttaggacagttgaaaatgaccaatcct |
31157213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 87; Significance: 2e-41; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 104 - 386
Target Start/End: Complemental strand, 17441163 - 17440899
Alignment:
| Q |
104 |
gatgaggttccattgtaaatactgcacaacatagaaagccaatgatattattgttattgtcatgcataataggcaatttgtctattagtattgaatcacc |
203 |
Q |
| |
|
|||||||| |||| | ||||||||||||||||| ||| |||||||||||||||| ||||| ||||||| ||| ||||||| |||||||||||| |
|
|
| T |
17441163 |
gatgaggtgccatggaaaatactgcacaacatacaaaaccaatgatattattgt------catgcttaataggagattggtctattcttattgaatcacc |
17441070 |
T |
|
| Q |
204 |
catgctctgattgttgatccaactcggtatttcacttcctgtagtaacaatttgaatcgtatcaaaataggcagggtaggtttgtgggtttgccttaata |
303 |
Q |
| |
|
|| ||||| ||||||||||||||| |||||||| ||||||| | ||||||| |||||| ||| |||||| ||||| |||||||||| |
|
|
| T |
17441069 |
cacgctcttattgttgatccaacttggtatttcgcttcctggactaacaatatgaatcctattcaaatagaaagggt------------ttgccttaatg |
17440982 |
T |
|
| Q |
304 |
aattgtgtcatccatgaaaatgtcatgctactgcaacactccctatcacccagttttggacagttgaaaacgatcaatcctgt |
386 |
Q |
| |
|
||||| |||||||||||||||||||||||||| |||| ||||| ||||||| ||||||||||||||| | || ||||||||| |
|
|
| T |
17440981 |
aattgcatcatccatgaaaatgtcatgctactgtaacattccctctcacccaattttggacagttgaagatgaacaatcctgt |
17440899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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