View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18982_low_25 (Length: 441)

Name: NF18982_low_25
Description: NF18982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18982_low_25
NF18982_low_25
[»] chr6 (21 HSPs)
chr6 (35-441)||(33387351-33387757)
chr6 (35-356)||(33261811-33262117)
chr6 (146-350)||(33409272-33409478)
chr6 (146-441)||(33303782-33304081)
chr6 (146-360)||(33398360-33398576)
chr6 (249-441)||(33644963-33645156)
chr6 (207-350)||(28870677-28870819)
chr6 (235-359)||(33271219-33271343)
chr6 (234-437)||(33284987-33285190)
chr6 (42-140)||(33282144-33282242)
chr6 (232-358)||(33396806-33396932)
chr6 (42-140)||(33397945-33398043)
chr6 (232-358)||(33407756-33407882)
chr6 (177-441)||(9166080-9166346)
chr6 (35-140)||(33283867-33283972)
chr6 (42-140)||(33408855-33408953)
chr6 (215-358)||(33281091-33281234)
chr6 (209-352)||(33056931-33057071)
chr6 (209-350)||(33358284-33358424)
chr6 (301-348)||(31563331-31563378)
chr6 (215-269)||(31563390-31563444)
[»] chr2 (2 HSPs)
chr2 (46-441)||(17441312-17441680)
chr2 (232-326)||(17446954-17447048)
[»] scaffold0428 (3 HSPs)
scaffold0428 (66-358)||(5615-5892)
scaffold0428 (42-140)||(12010-12108)
scaffold0428 (215-358)||(13018-13161)
[»] scaffold1408 (1 HSPs)
scaffold1408 (213-358)||(1-146)
[»] chr4 (2 HSPs)
chr4 (265-347)||(31479558-31479640)
chr4 (291-352)||(31485293-31485354)


Alignment Details
Target: chr6 (Bit Score: 395; Significance: 0; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 35 - 441
Target Start/End: Original strand, 33387351 - 33387757
Alignment:
Q  35 atgaatgatataaagttagcaagattcttttgaattatcttcagtacctctgcttgcggttgacaacagagattgtttttgcggttaacttgttatcact 134  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33387351 atgaatgatataaagttagcaagattcttttgaattatcttcagtacctctgcttgcggttgacaacagagattgtttttgcggttaacttgttatcact 33387450  T
Q  135 tgttgaattttttgtgatccatctgttgtttcttctcggtgtactagttatgacttgtgacatgaatgattcttgttgtggttgtggttgtgtcccatct 234  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  33387451 tgttgaattttttgtgatccatctgttgtttcttctcggtgtactagttatgacttgtgacatgaatgattcttgttgtggttgtagttgtgtcccatct 33387550  T
Q  235 tcaattgccaaaatcttacacttcggatccaaggaattttcgtgatttatcattggtaagttgaattcttgtaggtcttgtttacatacccaacgatacc 334  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33387551 tcaattgccaaaatcttacacttcggagccaaggaattttcgtgatttatcattggtaagttgaattcttgtaggtcttgtttacatacccaacgatacc 33387650  T
Q  335 cgcaactcttcacctccatacccaaagcctgccccttaaaaatgtcaaaacagatatttccaaattcatccgaggactctcgtgggaagtagattatcca 434  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33387651 cgcaactcttcacctccatacccaaagcttgccccttaaaaatgtcaaaacagatatttccaaattcatccgaggactctcgtgggaagtagattatcca 33387750  T
Q  435 taggtga 441  Q
    |||||||    
T  33387751 taggtga 33387757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 35 - 356
Target Start/End: Original strand, 33261811 - 33262117
Alignment:
Q  35 atgaatgatataaagttagcaagattcttttgaattatcttcagtacctctgcttgcggttgacaacagagattgtttttgcggttaacttgttatcact 134  Q
    |||||| ||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || |||||||||||||    
T  33261811 atgaataatataaaattaacaagattcttttgaattatcttcagtacctctgcttgcggttgaaaacagagattgtttttgcgtttgacttgttatcact 33261910  T
Q  135 tgttgaattttttgtgatccatctgttgtttcttctcggtgtactagttatgacttgtgacatgaatgattcttgtt------gtggttgtggttgtgtc 228  Q
    |||||| ||||||                     ||| ||| | ||||||||||||||||  |||||||||||||||      |||||||||||||||||    
T  33261911 tgttgactttttt---------------------ctctgtgaagtagttatgacttgtgaggtgaatgattcttgttctgattgtggttgtggttgtgtc 33261989  T
Q  229 ccatcttcaattgccaaaatcttacacttcggatccaaggaattttcgtgatttatcattggtaagttgaattcttgtaggtcttgtttacatacccaac 328  Q
     ||||||||||||||||||||||||| |||| | ||||||| ||||| ||||| ||||||| ||||||||| |||||||||||||||||||||||||||     
T  33261990 tcatcttcaattgccaaaatcttacatttcgaagccaaggatttttcatgattcatcattgttaagttgaactcttgtaggtcttgtttacatacccaat 33262089  T
Q  329 gatacccgcaactcttcacctccatacc 356  Q
    ||||||||||||||||||||||||||||    
T  33262090 gatacccgcaactcttcacctccatacc 33262117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 146 - 350
Target Start/End: Original strand, 33409272 - 33409478
Alignment:
Q  146 ttgtgatccatctgttgtttcttctcggt--gtactagttatgacttgtgacatgaatgattcttgttgtggttgtggttgtgtcccatcttcaattgcc 243  Q
    |||||||||||||||||||||||||   |  | | |||||||||||||||| |||||||||||||||| |||||||||||||||| |  |||||||||||    
T  33409272 ttgtgatccatctgttgtttcttctttcttcgaagtagttatgacttgtgagatgaatgattcttgttctggttgtggttgtgtctcgccttcaattgcc 33409371  T
Q  244 aaaatcttacacttcggatccaaggaattttcgtgatttatcattggtaagttgaattcttgtaggtcttgtttacatacccaacgatacccgcaactct 343  Q
    | ||||||||||||| || ||||||||||||| ||||| |||||||  |||||||| | ||||||||||||||||||||||||||||||||||||||| |    
T  33409372 ataatcttacacttctgagccaaggaattttcatgattcatcattgtgaagttgaacttttgtaggtcttgtttacatacccaacgatacccgcaacttt 33409471  T
Q  344 tcacctc 350  Q
    |||||||    
T  33409472 tcacctc 33409478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 146 - 441
Target Start/End: Original strand, 33303782 - 33304081
Alignment:
Q  146 ttgtgatccatctgttgtttcttctcggtgtactagttatgacttgtgacatgaatgattcttgttgt------ggttgtggttgtgtcccatcttcaat 239  Q
    |||||||||||||||||||||||||| ||| | |  ||||||||  ||| |||||||||||||||| |      |||| |||||||||| ||||||||||    
T  33303782 ttgtgatccatctgttgtttcttctctgtgaagt--ttatgactcttgagatgaatgattcttgttcttgttccggttctggttgtgtctcatcttcaat 33303879  T
Q  240 tgccaaaatcttacacttcggatccaaggaattttcgtgatttatcattggtaagttgaattcttgtaggtcttgtttacatacccaacgatacccgcaa 339  Q
    ||||||| |||| ||||||  | ||||| ||||||| ||||| ||||||| ||||||||||||||| ||||||| |||||||||||| ||||||||||||    
T  33303880 tgccaaattcttgcacttcccagccaagaaattttcttgattcatcattgttaagttgaattcttgcaggtcttctttacatacccaccgatacccgcaa 33303979  T
Q  340 ctcttcacctccatacccaaagcctgccccttaaaaatgtcaaaacagatatttccaaattcatccgaggactctcgtgggaagtagattatccataggt 439  Q
    ||||||||||||| ||  ||| | |  |||| |||||| | ||||  ||| ||| ||||||||    |||||||||| ||||||||||||||||||||||    
T  33303980 ctcttcacctccaaactaaaatcttcaccctcaaaaatattaaaatggattttttcaaattcactataggactctcgggggaagtagattatccataggt 33304079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 146 - 360
Target Start/End: Original strand, 33398360 - 33398576
Alignment:
Q  146 ttgtgatccatctgttgtttcttc--tcggtgtactagttatgacttgtgacatgaatgattcttgttgtggttgtggttgtgtcccatcttcaattgcc 243  Q
    ||||||||||||||||||||||||  ||   | | |||||||||||||||| |||||||||||||||| |||||||||||||||| |  |||||||||||    
T  33398360 ttgtgatccatctgttgtttcttccttcttcgaagtagttatgacttgtgagatgaatgattcttgttctggttgtggttgtgtctcgccttcaattgcc 33398459  T
Q  244 aaaatcttacacttcggatccaaggaattttcgtgatttatcattggtaagttgaattcttgtaggtcttgtttacatacccaacgatacccgcaactct 343  Q
    | ||||||||||||  || | ||||||||||| ||||| |||||||  ||||| || | | |||||||||||||||||||||||||||||||||||||||    
T  33398460 ataatcttacacttttgagcaaaggaattttcatgattcatcattgtgaagttcaactttcgtaggtcttgtttacatacccaacgatacccgcaactct 33398559  T
Q  344 tcacctccatacccaaa 360  Q
    ||||||| | |||||||    
T  33398560 tcacctcaaaacccaaa 33398576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 249 - 441
Target Start/End: Complemental strand, 33645156 - 33644963
Alignment:
Q  249 cttacacttcggatccaagga-attttcgtgatttatcattggtaagttgaattcttgtaggtcttgtttacatacccaacgatacccgcaactcttcac 347  Q
    ||||||||||||| | ||||| ||||| |||||| ||||||| ||||||||| | ||||||||||||||||||||||||||||||||| |||||||||||    
T  33645156 cttacacttcggagctaaggatatttttgtgattcatcattgttaagttgaactattgtaggtcttgtttacatacccaacgatacccacaactcttcac 33645057  T
Q  348 ctccatacccaaagcctgccccttaaaaatgtcaaaacagatatttccaaattcatccgaggactctcgtgggaagtagattatccataggtga 441  Q
    || |||||||| | | | || || ||||||||||||| ||||  ||||||||||||   |||| ||||| ||||||||||||||||||||||||    
T  33645056 cttcatacccagaccttccctctcaaaaatgtcaaaatagattcttccaaattcattataggaatctcgagggaagtagattatccataggtga 33644963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 207 - 350
Target Start/End: Complemental strand, 28870819 - 28870677
Alignment:
Q  207 ttgttgtggttgtggttgtgtcccatcttcaattgccaaaatcttacacttcggatccaaggaattttcgtgatttatcattggtaagttgaattcttgt 306  Q
    |||||| ||||| ||||||||||||||||||||| ||||||||||  ||||| || |||||||||||| ||| || ||||||| ||||||||| ||||||    
T  28870819 ttgttgaggttgcggttgtgtcccatcttcaatttccaaaatcttgaacttctgagccaaggaatttttgtg-ttcatcattgttaagttgaactcttgt 28870721  T
Q  307 aggtcttgtttacatacccaacgatacccgcaactcttcacctc 350  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  28870720 aggtcttgtttacatacccaacgatacccgcaactcttcacctc 28870677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 235 - 359
Target Start/End: Original strand, 33271219 - 33271343
Alignment:
Q  235 tcaattgccaaaatcttacacttcggatccaaggaattttcgtgatttatcattggtaagttgaattcttgtaggtcttgtttacatacccaacgatacc 334  Q
    |||||||||||||||||||| || ||| ||||||||||||||||||| | ||||| ||  ||||| |||||||||||||||||||||| |||||||||||    
T  33271219 tcaattgccaaaatcttacattttggagccaaggaattttcgtgattcagcattgttatattgaactcttgtaggtcttgtttacatatccaacgatacc 33271318  T
Q  335 cgcaactcttcacctccatacccaa 359  Q
    |||||||||||||||||||||||||    
T  33271319 cgcaactcttcacctccatacccaa 33271343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 234 - 437
Target Start/End: Original strand, 33284987 - 33285190
Alignment:
Q  234 ttcaattgccaaaatcttacacttcggatccaaggaattttcgtgatttatcattggtaagttgaattcttgtaggtcttgtttacatacccaacgatac 333  Q
    ||||||||||| |||||||||||||||| |||||||  ||| |||||| ||||||| ||| ||||| ||||||||||||||||||||||||||||||||     
T  33284987 ttcaattgccataatcttacacttcggagccaaggatattttgtgattcatcattgttaaattgaactcttgtaggtcttgtttacatacccaacgatat 33285086  T
Q  334 ccgcaactcttcacctccatacccaaagcctgccccttaaaaatgtcaaaacagatatttccaaattcatccgaggactctcgtgggaagtagattatcc 433  Q
    || ||||| |||||||||||||||||| | |  |||  || ||||| | ||| ||| ||| |||||| |||  |||||||||  | || |||||||||||    
T  33285087 ccacaactgttcacctccatacccaaatcttcacccccaacaatgtaacaactgattttttcaaatttatcataggactctctagagaggtagattatcc 33285186  T
Q  434 atag 437  Q
    ||||    
T  33285187 atag 33285190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 42 - 140
Target Start/End: Original strand, 33282144 - 33282242
Alignment:
Q  42 atataaagttagcaagattcttttgaattatcttcagtacctctgcttgcggttgacaacagagattgtttttgcggttaacttgttatcacttgttga 140  Q
    ||||||||||| ||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| ||||||||||    
T  33282144 atataaagttaacaaaattcttttgaattatcttcagtacctctgcttgcagttgacaacagagattgtttttgcggttgacttgttagcacttgttga 33282242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 232 - 358
Target Start/End: Original strand, 33396806 - 33396932
Alignment:
Q  232 tcttcaattgccaaaatcttacacttcggatccaaggaattttcgtgatttatcattggtaagttgaattcttgtaggtcttgtttacatacccaacgat 331  Q
    ||||||||| |||||||||| |||||| || ||||||||||||| ||||| ||||||| ||||||||| | |||||||||||||||||||||||||| ||    
T  33396806 tcttcaatttccaaaatcttgcacttctgaaccaaggaattttcatgattcatcattgttaagttgaacttttgtaggtcttgtttacatacccaactat 33396905  T
Q  332 acccgcaactcttcacctccataccca 358  Q
    ||| ||| |||||||||||||||||||    
T  33396906 acctgcagctcttcacctccataccca 33396932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 42 - 140
Target Start/End: Original strand, 33397945 - 33398043
Alignment:
Q  42 atataaagttagcaagattcttttgaattatcttcagtacctctgcttgcggttgacaacagagattgtttttgcggttaacttgttatcacttgttga 140  Q
    ||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| ||||||||||||||||||||    
T  33397945 atataaagttaacaaaattcttttgaattatcttcagtacctctgctagcggttgacaacaaagattgtttttgcggtcaacttgttatcacttgttga 33398043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 232 - 358
Target Start/End: Original strand, 33407756 - 33407882
Alignment:
Q  232 tcttcaattgccaaaatcttacacttcggatccaaggaattttcgtgatttatcattggtaagttgaattcttgtaggtcttgtttacatacccaacgat 331  Q
    ||||||||| |||||||||| |||||| || ||||||||||||||||||| ||||||| ||||||||| | |||||||||||||||||||||||||| ||    
T  33407756 tcttcaatttccaaaatcttgcacttctgagccaaggaattttcgtgattcatcattgttaagttgaacttttgtaggtcttgtttacatacccaactat 33407855  T
Q  332 acccgcaactcttcacctccataccca 358  Q
    ||||||| |||||||||| | ||||||    
T  33407856 acccgcagctcttcaccttcgtaccca 33407882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 177 - 441
Target Start/End: Original strand, 9166080 - 9166346
Alignment:
Q  177 actagttatgacttgtgacatgaatgattcttgttgtggtt-----gtggttgtgtcccatcttcaattgccaaaatcttacacttcggatccaaggaat 271  Q
    |||||| ||||||| ||| | |||||||||||||| |||||     |||| ||| || |||| | |||||||||| |||| ||| || || |||| || |    
T  9166080 actagtcatgacttatgagacgaatgattcttgttctggttcggttgtggctgtctctcatcctaaattgccaaagtcttgcacgtccgagccaatgatt 9166179  T
Q  272 tttcgtgatttatcattggtaagttgaattcttgtaggtcttgtttacatacccaacgatacccgcaactcttcacctccatacccaaagcctgcccctt 371  Q
    |||||||||| ||| ||   |||||||| ||||||||||||||||||||||||||||| || || ||| ||||||||| |||| ||||| | |  |||      
T  9166180 tttcgtgattcatcgtt---aagttgaactcttgtaggtcttgtttacatacccaacggtatccacaagtcttcaccttcatatccaaaccttcaccccg 9166276  T
Q  372 aaaaatgtcaaaacagatatttccaaattcatccgaggactctcgtgggaagtagattatccataggtga 441  Q
    || ||||||||||  ||| ||||||||||||||  |||||||||| |||| |||||||||||||||||||    
T  9166277 aataatgtcaaaatggatttttccaaattcatcgtaggactctcgggggaggtagattatccataggtga 9166346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 35 - 140
Target Start/End: Original strand, 33283867 - 33283972
Alignment:
Q  35 atgaatgatataaagttagcaagattcttttgaattatcttcagtacctctgcttgcggttgacaacagagattgtttttgcggttaacttgttatcact 134  Q
    |||||| ||||||| ||| ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| |||||||| ||||    
T  33283867 atgaataatataaaattaacaagattcttttgaattatcttcagtaccgctgcttgcagttgacaacagagattgtttttgcggttgacttgttagcact 33283966  T
Q  135 tgttga 140  Q
    | ||||    
T  33283967 tcttga 33283972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 42 - 140
Target Start/End: Original strand, 33408855 - 33408953
Alignment:
Q  42 atataaagttagcaagattcttttgaattatcttcagtacctctgcttgcggttgacaacagagattgtttttgcggttaacttgttatcacttgttga 140  Q
    ||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| ||||  |||||||||||||||||||    
T  33408855 atataaagttaacaaaattcttttgaattatcttcagtacctctgctagcggttgacaacaaagattgtttttccggtcgacttgttatcacttgttga 33408953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 215 - 358
Target Start/End: Original strand, 33281091 - 33281234
Alignment:
Q  215 gttgtggttgtgtcccatcttcaattgccaaaatcttacacttcggatccaaggaattttcgtgatttatcattggtaagttgaattcttgtaggtcttg 314  Q
    |||| ||||||||||||||||||||| |||||||||| |||||| || ||||||||  ||| ||||| || |||| |||  |||| ||||||||||||||    
T  33281091 gttgcggttgtgtcccatcttcaatttccaaaatcttgcacttctgagccaaggaagcttcatgattcattattgttaaactgaactcttgtaggtcttg 33281190  T
Q  315 tttacatacccaacgatacccgcaactcttcacctccataccca 358  Q
    ||||||||  ||||||| | ||||||||||||||||| ||||||    
T  33281191 tttacatattcaacgatgcacgcaactcttcacctccgtaccca 33281234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 209 - 352
Target Start/End: Original strand, 33056931 - 33057071
Alignment:
Q  209 gttgtggttgtggttgtgtcccatcttcaattgccaaaatcttacacttcggatccaaggaattttcgtgatttatcattggtaagttgaattcttgtag 308  Q
    |||| |||| |||||||||| |||||||||||| |||||| || ||||| |||   |||||||||| |||||| || |||   || |||||||||||||     
T  33056931 gttgcggttctggttgtgtctcatcttcaattgtcaaaattttgcactttggagttaaggaatttttgtgattcatgatt---aaattgaattcttgtat 33057027  T
Q  309 gtcttgtttacatacccaacgatacccgcaactcttcacctcca 352  Q
     ||||||||||||||||||||||| ||||||||||  |||||||    
T  33057028 atcttgtttacatacccaacgataaccgcaactctcgacctcca 33057071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 209 - 350
Target Start/End: Original strand, 33358284 - 33358424
Alignment:
Q  209 gttgtggttgtggttgtgtcccatcttcaattgccaaaatcttacacttcggatccaaggaattttcgtgatttatcattggtaagttgaattcttgtag 308  Q
    |||| ||||| ||||| |||  ||||||||||||||||||||| || |||  |   |||  |||||||||||| |||||||  |||||||| ||||||||    
T  33358284 gttgcggttgcggttgcgtctaatcttcaattgccaaaatcttgcatttcccagttaagagattttcgtgattcatcattgtgaagttgaactcttgtag 33358383  T
Q  309 gtcttgtttacatacccaacgatacccgcaactcttcacctc 350  Q
    |||||||||| | |||||||||||| | ||||||||||||||    
T  33358384 gtcttgttta-aaacccaacgatactcacaactcttcacctc 33358424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 301 - 348
Target Start/End: Complemental strand, 31563378 - 31563331
Alignment:
Q  301 tcttgtaggtcttgtttacatacccaacgatacccgcaactcttcacc 348  Q
    ||||||||||| |||||||||||||||||||| |||||||||||||||    
T  31563378 tcttgtaggtcatgtttacatacccaacgatatccgcaactcttcacc 31563331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 215 - 269
Target Start/End: Complemental strand, 31563444 - 31563390
Alignment:
Q  215 gttgtggttgtgtcccatcttcaattgccaaaatcttacacttcggatccaagga 269  Q
    |||||||||||||| ||||||||||||||||| |||| |||||| || |||||||    
T  31563444 gttgtggttgtgtctcatcttcaattgccaaattctttcacttccgagccaagga 31563390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 137; Significance: 2e-71; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 46 - 441
Target Start/End: Complemental strand, 17441680 - 17441312
Alignment:
Q  46 aaagttagcaagattcttttgaattatcttcagtacctctgcttgcggttgacaacagagattgtttttgcggttaacttgttatcacttgttgaatttt 145  Q
    ||||||| ||||||| ||||||||||||||| |||||| ||||||  ||||||||||||||||||| |||| ||| | ||||||||||||||||| |||     
T  17441680 aaagttaacaagatttttttgaattatcttccgtacctttgcttgttgttgacaacagagattgttgttgcagttgatttgttatcacttgttgacttt- 17441582  T
Q  146 ttgtgatccatctgttgtttcttctcggtgtactagttatgacttgtgacatgaatgattcttgttgtggttgtggttgtgtcccatcttcaattgccaa 245  Q
                        |||||  ||| | |||||||||||||||| |||||||||||||||| ||||||||      || ||||||||||||||||    
T  17441581 --------------------cttctttgtgaagtagttatgacttgtgagatgaatgattcttgttctggttgtg------tctcatcttcaattgccaa 17441508  T
Q  246 aatcttacacttcggatccaaggaattttcgtgatttatcattggtaagttgaattcttgtaggtcttgtttacatacccaacgatacccgcaactcttc 345  Q
    |||||| |||||| || ||||||  ||||||||||| ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  17441507 aatcttgcacttctgagccaaggttttttcgtgattcatcattgttaagttgaactcttgtaggtcttgtttacatacccaacgatacccgcaactcttc 17441408  T
Q  346 acctccatacccaaagcctgccccttaaaaatgtcaaaacagatatttccaaattcatccgaggactctcgtgggaagtagattatccataggtga 441  Q
    ||||||||||||||||| ||||||| |||||| ||||||| ||| | || |||| |||   ||||||| |   |||||||||||||||||| ||||    
T  17441407 acctccatacccaaagcttgcccctcaaaaatttcaaaacggatttctcgaaatgcatgataggactcacagtggaagtagattatccatatgtga 17441312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 232 - 326
Target Start/End: Complemental strand, 17447048 - 17446954
Alignment:
Q  232 tcttcaattgccaaaatcttacacttcggatccaaggaattttcgtgatttatcattggtaagttgaattcttgtaggtcttgtttacataccca 326  Q
    ||||||||| | |||||||| |||||| || ||||||||||||||| ||| | ||||| ||||||||| ||||||||||||||||||||||||||    
T  17447048 tcttcaatttcaaaaatcttgcacttctgagccaaggaattttcgttattcaacattgttaagttgaactcttgtaggtcttgtttacataccca 17446954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428 (Bit Score: 120; Significance: 3e-61; HSPs: 3)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 66 - 358
Target Start/End: Original strand, 5615 - 5892
Alignment:
Q  66 gaattatcttcagtacctctgcttgcggttgacaacagagattgtttttgcggttaacttgttatcacttgttgaattttttgtgatccatctgttgttt 165  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||| || ||||||||||||||||||| |||                         
T  5615 gaattatcttcagtacctctgcttgcggttgaaaacagagattgtttttgcgtttgacttgttatcacttgttgacttt--------------------- 5693  T
Q  166 cttctcggtgtactagttatgacttgtgacatgaatgattcttgtt------gtggttgtggttgtgtcccatcttcaattgccaaaatcttacacttcg 259  Q
    |||||| ||| | ||||||||||||||||  |||||||||||||||      ||||||||||||||||| ||||||||||||||||||||||||| ||||    
T  5694 cttctctgtgaagtagttatgacttgtgaggtgaatgattcttgttctgattgtggttgtggttgtgtctcatcttcaattgccaaaatcttacatttcg 5793  T
Q  260 gatccaaggaattttcgtgatttatcattggtaagttgaattcttgtaggtcttgtttacatacccaacgatacccgcaactcttcacctccataccca 358  Q
     | ||||||| ||||| ||||| ||||||| ||||||||| ||||||| || ||||||||||||||||||||||||||||| |||||| ||||||||||    
T  5794 aagccaaggatttttcatgattcatcattgttaagttgaactcttgtaagttttgtttacatacccaacgatacccgcaacacttcacatccataccca 5892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 42 - 140
Target Start/End: Complemental strand, 12108 - 12010
Alignment:
Q  42 atataaagttagcaagattcttttgaattatcttcagtacctctgcttgcggttgacaacagagattgtttttgcggttaacttgttatcacttgttga 140  Q
    ||||||||||| ||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| ||||||||||    
T  12108 atataaagttaacaaaattcttttgaattatcttcagtacctctgcttgcagttgacaacagagattgtttttgcggttgacttgttagcacttgttga 12010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 215 - 358
Target Start/End: Complemental strand, 13161 - 13018
Alignment:
Q  215 gttgtggttgtgtcccatcttcaattgccaaaatcttacacttcggatccaaggaattttcgtgatttatcattggtaagttgaattcttgtaggtcttg 314  Q
    |||| ||||||||||||||||||||| |||||||||| |||||| || ||||||||  ||| ||||| || |||| |||  |||| ||||||||||||||    
T  13161 gttgcggttgtgtcccatcttcaatttccaaaatcttgcacttctgagccaaggaagcttcatgattcattattgttaaactgaactcttgtaggtcttg 13062  T
Q  315 tttacatacccaacgatacccgcaactcttcacctccataccca 358  Q
    ||||||||  ||||||| | ||||||||||||||||| ||||||    
T  13061 tttacatattcaacgatgcacgcaactcttcacctccgtaccca 13018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1408 (Bit Score: 94; Significance: 1e-45; HSPs: 1)
Name: scaffold1408
Description:

Target: scaffold1408; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 213 - 358
Target Start/End: Original strand, 1 - 146
Alignment:
Q  213 tggttgtggttgtgtcccatcttcaattgccaaaatcttacacttcggatccaaggaattttcgtgatttatcattggtaagttgaattcttgtaggtct 312  Q
    |||||||||||||||| ||||||||||||||||||||||||| |||| | ||||||| ||||| ||||| ||||||| ||||||||| ||||||| || |    
T  1 tggttgtggttgtgtctcatcttcaattgccaaaatcttacatttcgaagccaaggatttttcatgattcatcattgttaagttgaactcttgtaagttt 100  T
Q  313 tgtttacatacccaacgatacccgcaactcttcacctccataccca 358  Q
    |||||||||||||||||||||||||||| |||||| ||||||||||    
T  101 tgtttacatacccaacgatacccgcaacacttcacatccataccca 146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 265 - 347
Target Start/End: Complemental strand, 31479640 - 31479558
Alignment:
Q  265 aaggaattttcgtgatttatcattggtaagttgaattcttgtaggtcttgtttacatacccaacgatacccgcaactcttcac 347  Q
    |||||||||  |||||| ||| ||| |||||||||||||||||| || |||||| | |||||||| ||||| ||| |||||||    
T  31479640 aaggaatttctgtgattcatctttgttaagttgaattcttgtagatcctgtttataaacccaacggtacccacaattcttcac 31479558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 291 - 352
Target Start/End: Complemental strand, 31485354 - 31485293
Alignment:
Q  291 taagttgaattcttgtaggtcttgtttacatacccaacgatacccgcaactcttcacctcca 352  Q
    ||||||||| ||||| || || || ||| |||||||||||||||||||||||||||| ||||    
T  31485354 taagttgaactcttgcagatcctgcttaaatacccaacgatacccgcaactcttcacttcca 31485293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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