View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18982_low_26 (Length: 441)
Name: NF18982_low_26
Description: NF18982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18982_low_26 |
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Alignment Details
Target: chr4 (Bit Score: 418; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 1 - 426
Target Start/End: Original strand, 54113747 - 54114172
Alignment:
| Q |
1 |
ccactatatataatcaccctcccaattcctcaaaactcaggtgcagaaattaacttcaacaatttctccctttttattatctgcatctaaaattacactt |
100 |
Q |
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| T |
54113747 |
ccactatatataatcaccctcccaattcctcaaaactcaggtgcagaaattaacttcaacaatttctccctttttattatctgcatctaaaattacactt |
54113846 |
T |
|
| Q |
101 |
agataaaagaaaatgccatcatcatcttcattggaagaccaactctacccatctacaccaggaaaattcaagatcgaaagaaaccacggtctaatgaatc |
200 |
Q |
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| T |
54113847 |
agataaaagaaaatgccatcatcatcttcattggaagaccaactctacccatctacaccaggaaaattcaagatcgaaagaaaccacggtctaatgaacc |
54113946 |
T |
|
| Q |
201 |
gtcaggttcaccgttgtttcggttcatcaagcaccatgttcttgtgggcgcttttgcttatcgcatcaactgtttcttacgtcacttttcaaggcgtcgt |
300 |
Q |
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| T |
54113947 |
gtcaggttcaccgttgtttcggttcatcaagcaccatgttcttgtgggcgcttttgcttatcgcatcaactgtttcttacgtcacttttcaaggcgtcgt |
54114046 |
T |
|
| Q |
301 |
tgattccggtagccggtatctctccgcttcgtggggtggaattcaatgggaaaaacaagtcagagcctccgctcaaatccaccgtcaaggcggcatgtca |
400 |
Q |
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| T |
54114047 |
tgattccggtagccggtatctctccgcttcatggggtggaattcaatgggaaaaacaagtcagagcctccgctcaaatccaccgtcaaggcggcatgtca |
54114146 |
T |
|
| Q |
401 |
gtacttgttaccggcgcagcaggttt |
426 |
Q |
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| T |
54114147 |
gtacttgttaccggcgcagcaggttt |
54114172 |
T |
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Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 47 - 92
Target Start/End: Original strand, 3207504 - 3207549
Alignment:
| Q |
47 |
aaattaacttcaacaatttctccctttttattatctgcatctaaaa |
92 |
Q |
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||||||||||||| ||||||||| |||||||||||||||||||||| |
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| T |
3207504 |
aaattaacttcaataatttctccgtttttattatctgcatctaaaa |
3207549 |
T |
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