View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18982_low_28 (Length: 437)
Name: NF18982_low_28
Description: NF18982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18982_low_28 |
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Alignment Details
Target: chr8 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 12 - 411
Target Start/End: Complemental strand, 2276850 - 2276449
Alignment:
| Q |
12 |
gaatataattatgtattaactattagagcgtgatgttggttagatcatcataagttcttcttagatattagtcaattacaaccaactattgtcgagttat |
111 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| |
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| T |
2276850 |
gaatataattatgtattaactattagaccgtgatgttggttagatcatcataagttcttcttagatattagtccattacaaccaactattgttgagttat |
2276751 |
T |
|
| Q |
112 |
cacaacacaaggtcttgagtcaacacaaagtttctattttattgcatttcttcactgtgaatcattgtacaagtagtaaatgcagactattcactt--ga |
209 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| || |
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| T |
2276750 |
cacaacacaaggtcttgagtcaacacaaagtttgtattttattgcatttcttcactgtgaatcatagtacaagtagtaagtgcagactattcacttttga |
2276651 |
T |
|
| Q |
210 |
actctaataaaaaattgtttaattattgatctttaatcactcgaactcaaatgcttaatcacttcattggcaaaaaacgggaatttaatatagaatagag |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2276650 |
actctaataaaaaattgtttaattattgatctttaatcactcgaactcaaatgcttaatcacttcattggcaaaaaacgggaatttaatatagaatagag |
2276551 |
T |
|
| Q |
310 |
aaaaggtgttgattctcattctttgttttttggattctatggttgattctcatcctatttgccaaatattgaataaatcatgagtatgagtatttatatt |
409 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2276550 |
aaaaggtgttgattctcattctctgttttttggattctatggttgattctcatcctatttgccaaatattgaataaatcatgagtatgagtatttatatt |
2276451 |
T |
|
| Q |
410 |
ta |
411 |
Q |
| |
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|| |
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|
| T |
2276450 |
ta |
2276449 |
T |
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