View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18982_low_29 (Length: 421)
Name: NF18982_low_29
Description: NF18982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18982_low_29 |
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Alignment Details
Target: chr7 (Bit Score: 390; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 1 - 406
Target Start/End: Complemental strand, 29047392 - 29046987
Alignment:
| Q |
1 |
cttgcatagcaggaagagggtttgaggctcttaaagaaggattatttgtaatgaataccttcaaaccaagttcacctttcgtgcgcgaaaaaatgccttt |
100 |
Q |
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| T |
29047392 |
cttgcatagcaggaagagggtttgaggctcttaaagaaggattatttgtaatgaataccttcaaaccaagttcacctttcgtgcgcgaaaaaatgccttt |
29047293 |
T |
|
| Q |
101 |
cttttcaagaggatagtgtaatacaacagcatcagaatgtggaacaaatgaggttccagtgagcctaaccttaccaaggggaactttggagccattggtt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| |||||||||||||||| |
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| T |
29047292 |
cttttcaagaggatagtgtaatacaacagcatcagaatgtggaacaaatgaggttccagtgagcttaaccttgccaaggggaattttggagccattggtt |
29047193 |
T |
|
| Q |
201 |
ttgttatagtggtttatgcaggcttcaagattaaggtttgataacttgcttggatctgtaatgttgaagtaaaaaatctcattccaatatggactaagat |
300 |
Q |
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| T |
29047192 |
ttgttatagtggtttatgcaggcttcaagattaaggtttgataacttgcttggatctgtaatgttgaagtaaaaaatctcattccaatatggactaagat |
29047093 |
T |
|
| Q |
301 |
ctttatctttagttgatgtacgaaatttctgatcatcaaattcaagttctacaaaagtagtagatgacccctctccatctttggcaacaaggtcatgagc |
400 |
Q |
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| T |
29047092 |
ctttatctttagttgttgtacgaaatttctgatcatcaaattcaagttctacaaaagtagtagatgacccctctccatctttggcaacaaggtcatgagc |
29046993 |
T |
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| Q |
401 |
accaac |
406 |
Q |
| |
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|||||| |
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| T |
29046992 |
accaac |
29046987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 54 - 178
Target Start/End: Original strand, 11705118 - 11705242
Alignment:
| Q |
54 |
aataccttcaaaccaagttcacctttcgtgcgcgaaaaaatgcctttcttttcaagaggatagtgtaatacaacagcatcagaatgtggaacaaatgagg |
153 |
Q |
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||||||||||||||||| || ||||| ||| ||||| || ||||||||| ||||| ||||| |||||||||||||||||| |||| |||||||||| |
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| T |
11705118 |
aataccttcaaaccaagctctccttttacgcgagaaaaggtgattttcttttccagagggtagtgcaatacaacagcatcagaaagtggcacaaatgagg |
11705217 |
T |
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| Q |
154 |
ttccagtgagcctaaccttaccaag |
178 |
Q |
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|| | ||||| | ||||||||||| |
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| T |
11705218 |
tttccgtgagacggaccttaccaag |
11705242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 234 - 406
Target Start/End: Original strand, 11705301 - 11705473
Alignment:
| Q |
234 |
aggtttgataacttgcttggatctgtaatgttgaagtaaaaaatctcattccaatatggactaagatctttatctttagttgatgtacgaaatttctgat |
333 |
Q |
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||| ||| ||| ||||||||||| | |||| |||||||||| |||| |||||| ||| | |||||||| ||||| || | ||| ||||| ||||||| |
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| T |
11705301 |
aggcttggtaatttgcttggatcagcaatggtgaagtaaaatttctcgttccaaacaggattcagatctttttctttcgtagttgtccgaaacttctgat |
11705400 |
T |
|
| Q |
334 |
catcaaattcaagttctacaaaagtagtagatgacccctctccatctttggcaacaaggtcatgagcaccaac |
406 |
Q |
| |
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||||||| | |||||| ||||||| | | | || || || |||||||| | | |||||||||||||||||| |
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| T |
11705401 |
catcaaaatgaagttccacaaaagcacttgccgagccttccccatcttttggcataaggtcatgagcaccaac |
11705473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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