View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18982_low_30 (Length: 418)
Name: NF18982_low_30
Description: NF18982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18982_low_30 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 390; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 1 - 402
Target Start/End: Original strand, 36938095 - 36938496
Alignment:
| Q |
1 |
cacgaggtacgagaaagacagtcttggtagagtcacatattcaaatctatttcatcttttgaacataaacacgagtgaagtcacggattttactactcgt |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36938095 |
cacgaggtacgagaaagacagtctaggtagagtcacatattcaaaactatttcatctttggaacataaacacgagtgaagtcacggattttactactcgt |
36938194 |
T |
|
| Q |
101 |
ttctcatttactatcaacaccctcaacaaaaccgatcattcagatggaatcaccttctatttggcacaccccaattttccactacctgttccaagagatg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36938195 |
ttctcatttactatcaacaccctcaacaaaaccgatcattcagatggaatcaccttctatttggcacaccccaattttccactacctgttccaagagatg |
36938294 |
T |
|
| Q |
201 |
gaagtggtattggtctcatgagcagcgttcaattagctactccaaattacacaaaagaaaatccctttgtggctgtggaatttgatacatttgtcaatac |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36938295 |
gaagtggtattggtctcatgagcagcgttcaattagctactccaaattacacaaaagaaaatccctttgtggctgtggaatttgatacatttgtcaatac |
36938394 |
T |
|
| Q |
301 |
atgggatcctacatatgatcatgtggggattgatgttaattcaatcagtacttcttacacaacccaatggttcactagcttggacgaaagaggatatgat |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36938395 |
atgggatcctacatatgatcatgtggggattgatgttaattcaatcagtacttcttacacaacccaatggttcactagcttggacgaaagaggatatgat |
36938494 |
T |
|
| Q |
401 |
gt |
402 |
Q |
| |
|
|| |
|
|
| T |
36938495 |
gt |
36938496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 11 - 401
Target Start/End: Original strand, 36948352 - 36948739
Alignment:
| Q |
11 |
gagaaagacagtcttggtagagtcacatattcaaatctatttcatcttttgaacataaacacgagtgaagtcacggattttactactcgtttctcattta |
110 |
Q |
| |
|
|||||||||||||| || ||||||||||||||||| | |||||||||| |||||| ||||| ||||||||||| ||||| |||||||||||||||||| |
|
|
| T |
36948352 |
gagaaagacagtctaggcagagtcacatattcaaaattgtttcatctttggaacattaacacaagtgaagtcacagatttcactactcgtttctcatttt |
36948451 |
T |
|
| Q |
111 |
ctatcaacaccctcaacaaaaccgatcattcagatggaatcaccttctatttggcacaccccaattttccactacctgttccaag-agatggaagtggta |
209 |
Q |
| |
|
|||||||||||| |||||||| ||||| |||||| ||||||||||||||||||| |||||||||||| || ||| |||| |||||||||||||| |
|
|
| T |
36948452 |
ctatcaacacccccaacaaaagttatcatggagatggcatcaccttctatttggcacgccccaattttcc--ta--tgtcccaaatagatggaagtggta |
36948547 |
T |
|
| Q |
210 |
ttggtctcatgagcagcgttcaattagctactccaaattacacaaaagaaaatccctttgtggctgtggaatttgatacatttgtcaatacatgggatcc |
309 |
Q |
| |
|
| ||||| |||| | |||||||| || |||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||| |||||||| |
|
|
| T |
36948548 |
tcggtctagcgagccgtgttcaattgagtaatccaaattacacaaaagaaaatccatttgtagctgtggaatttgatacatttgttaatgactgggatcc |
36948647 |
T |
|
| Q |
310 |
tacatatgatcatgtggggattgatgttaattcaatcagtacttcttacacaacccaatggttcactagcttggacgaaagaggatatgatg |
401 |
Q |
| |
|
|| |||||||||||| ||||||||||||||||| ||||| ||| | |||| || ||||||||||||||| |||| |||||||||||||||| |
|
|
| T |
36948648 |
taaatatgatcatgttgggattgatgttaattctatcagcactaatcacactacacaatggttcactagcatggatgaaagaggatatgatg |
36948739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 18 - 401
Target Start/End: Original strand, 36958493 - 36958873
Alignment:
| Q |
18 |
acagtcttggtagagtcacatattcaaatctatttcatcttttgaacataaacacgagtgaagtcacggattttactactcgtttctcatttactatcaa |
117 |
Q |
| |
|
||||||| || ||||||||||||||||| | |||||||||| | ||||||| || || |||||||| ||||| | |||||||||||||||||||||||| |
|
|
| T |
36958493 |
acagtctaggcagagtcacatattcaaaattgtttcatctttgggacataaaaacaagcgaagtcacagatttcaatactcgtttctcatttactatcaa |
36958592 |
T |
|
| Q |
118 |
caccctcaacaaaaccgatcattcagatggaatcaccttctatttggcacaccccaattttccactacctgttcc-aagagatggaagtggtattggtct |
216 |
Q |
| |
|
||||| |||||||||| ||||| ||||||| || ||||||||||||||||||||||||||||| | ||| || || | ||||| | || || ||||| |
|
|
| T |
36958593 |
cacccccaacaaaacccatcatgcagatggcatgaccttctatttggcacaccccaattttcc----catgtcccaaatatatggaggcggaatcggtct |
36958688 |
T |
|
| Q |
217 |
catgagcagcgttcaattagctactccaaattacacaaaagaaaatccctttgtggctgtggaatttgatacatttgtcaatacatgggatcctacatat |
316 |
Q |
| |
|
|||| |||||||| || |||| ||||||||||||||||||| ||||| ||||||||||||||||||||||| ||| ||||||||||| ||| |
|
|
| T |
36958689 |
tgcgagccttgttcaattgagtaatccagattacacaaaagaaaatccatttgtagctgtggaatttgatacatttgttaatgaatgggatcctaactat |
36958788 |
T |
|
| Q |
317 |
gatcatgtggggattgatgttaattcaatcagtacttcttacacaacccaatggttcactagcttggacgaaagaggatatgatg |
401 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||| ||| | || | || ||||||||||||||| |||| |||||||||||||||| |
|
|
| T |
36958789 |
gatcatgttgggattgatgttaattctatcagcactaatcacgctacacaatggttcactagcatggatgaaagaggatatgatg |
36958873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University