View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18982_low_31 (Length: 415)
Name: NF18982_low_31
Description: NF18982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18982_low_31 |
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Alignment Details
Target: chr7 (Bit Score: 245; Significance: 1e-136; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 26 - 396
Target Start/End: Original strand, 31620971 - 31621347
Alignment:
| Q |
26 |
catgggagtaagaacgaacgagaattcgaaaaggtgtacacaacttcaatattacctccacaggagggattataaacctcgcccat---agttgtatcac |
122 |
Q |
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| T |
31620971 |
catgtgagtgagagcgaacgaggatccgaaagggtgtacacaacttcaatattacctccgcagttggcactataaaccacattcaatacagttgtatcac |
31621070 |
T |
|
| Q |
123 |
aattatataacagatttacttgagaaaaaacaccactatcacgttgaaactgatcagcgctctcaaatgtgctgttattaggcttgtcactcacactcac |
222 |
Q |
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| T |
31621071 |
aattgtataacagatttagttgagaagaaacactaccataaggttgaaactggtcagcgctctcaaatgtgctgttattaggcttgtcactcacactcac |
31621170 |
T |
|
| Q |
223 |
actcacagtacaaataccaccccagtaatcgtctctagcgactgtgagtttctgtgttttattgtcccattcaagaatacggtatttgacgtcattgatg |
322 |
Q |
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| T |
31621171 |
actcacagtacaaataccaccccagtaatcgtctctagcgactgtgagtttctgtgttgtattgtcccattcaagaatacggtatttgacgtcattgatg |
31621270 |
T |
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| Q |
323 |
gttatctttggaacactttcttcgcatgtaagctccatattaggatcagaaac---accacaactctcttctctgtt |
396 |
Q |
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| T |
31621271 |
gttatctttggaacactttcttcgcatgtaagctccatattaggatcagaaacactaccacaacgctcttctctgtt |
31621347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 26 - 396
Target Start/End: Original strand, 31635966 - 31636342
Alignment:
| Q |
26 |
catgggagtaagaacgaacgagaattcgaaaaggtgtacacaacttcaatattacctccacaggagggattataaacctcgcccat---agttgtatcac |
122 |
Q |
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| T |
31635966 |
catgtgagtgagagcgaacgaggatccgaaagggtgtacacaacttcaatattacctccgcagttggcactataaaccacattcaatacagttgtatcac |
31636065 |
T |
|
| Q |
123 |
aattatataacagatttacttgagaaaaaacaccactatcacgttgaaactgatcagcgctctcaaatgtgctgttattaggcttgtcactcacactcac |
222 |
Q |
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|||| ||||||||||||| ||||||| |||||| || || | |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31636066 |
aattgtataacagatttagttgagaagaaacactaccataaggttgaaactggtcagcgctctcaaatgtgctgttattaggcttgtcactcacactcac |
31636165 |
T |
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| Q |
223 |
actcacagtacaaataccaccccagtaatcgtctctagcgactgtgagtttctgtgttttattgtcccattcaagaatacggtatttgacgtcattgatg |
322 |
Q |
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| T |
31636166 |
actcacagtacaaataccaccccagtaatcgtctctagcgactgtgagtttctgtgttgtattgtcccattcaagaatacggtatttgacgtcattgatg |
31636265 |
T |
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| Q |
323 |
gttatctttggaacactttcttcgcatgtaagctccatattaggatcagaaac---accacaactctcttctctgtt |
396 |
Q |
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| T |
31636266 |
gttatctttggaacactttcttcgcatgtaagctccatattaggatcagaaacactaccacaacgctcttctctgtt |
31636342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 114 - 373
Target Start/End: Original strand, 31616325 - 31616575
Alignment:
| Q |
114 |
ttgtatcacaattatataacagatttacttgagaaaaaacaccactatcacgttgaaactgatcagcgctctcaaatgtgctgttattaggcttgtcact |
213 |
Q |
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||||||||||||| |||||||| |||||||||||| ||||| ||| ||||||||||||| || || ||| ||||| || ||||| || || || | |
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| T |
31616325 |
ttgtatcacaattgtataacaggtttacttgagaagaaacaacaccatcacgttgaaac--at-agtgctatcaaaagttctgttcttgggatt-----t |
31616416 |
T |
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| Q |
214 |
cacactcacactcacagtacaaataccaccccagtaatcgtctctagcgactgtgagtttctgtgttttattgtcccattcaagaatacggtatttgacg |
313 |
Q |
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| T |
31616417 |
c-cactcacattgacagcacaaataccactccagtaatcgtctctggcgatcgtgagtttctgtattatatcattccaatcatgaatacggtatttggcg |
31616515 |
T |
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| Q |
314 |
tcattgatggttatctttggaacactttcttcgcatgtaagctccatattaggatcagaa |
373 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31616516 |
tcattgatggttatctttggaacactttcttcgcatgtaagctccatattaggatcagaa |
31616575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 217 - 369
Target Start/End: Original strand, 31606494 - 31606646
Alignment:
| Q |
217 |
actcacactcacagtacaaataccaccccagtaatcgtctctagcgactgtgagtttctgtgttttattgtcccattcaagaatacggtatttgacgtca |
316 |
Q |
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||||||| |||||| ||||||||||| |||| |||| ||||| |||||||||||||| ||| || ||| || ||| |||||||| |||||||||||||| |
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| T |
31606494 |
actcacattcacagcacaaataccactccagcaatcttctctggcgactgtgagtttttgtattgtatcgttccaatcaagaatgcggtatttgacgtcg |
31606593 |
T |
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| Q |
317 |
ttgatggttatctttggaacactttcttcgcatgtaagctccatattaggatc |
369 |
Q |
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||||| ||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
31606594 |
ttgatatttatctttggaacactttcttcgcatgtaagatccatattaggatc |
31606646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 227 - 397
Target Start/End: Original strand, 31610334 - 31610507
Alignment:
| Q |
227 |
acagtacaaataccaccccagtaatcgtctctagcgactgtgagtttctgtgttttattgtcccattcaagaatacggtatttgacgtcattgatggtta |
326 |
Q |
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|||| ||||||||||| ||||||||||||||| || ||| ||||| |||||||| ||||||||||||||||||||||||||||||| ||| || |||| |
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| T |
31610334 |
acagcacaaataccactccagtaatcgtctctggcaactctgagtctctgtgttgtattgtcccattcaagaatacggtatttgaccaaattaattgtta |
31610433 |
T |
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| Q |
327 |
tctttggaacactttcttcgcatgtaagctccatattaggat---cagaaacaccacaactctcttctctgttt |
397 |
Q |
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|||| || |||||| |||||||| |||||||| ||||||| |||||||||||||| || |||||||||| |
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| T |
31610434 |
tcttagggacacttccttcgcatacgagctccatcttaggatcaccagaaacaccacaatacttttctctgttt |
31610507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 244 - 382
Target Start/End: Original strand, 31597326 - 31597464
Alignment:
| Q |
244 |
ccagtaatcgtctctagcgactgtgagtttctgtgttttattgtcccattcaagaatacggtatttgacgtcattgatggttatctttggaacactttct |
343 |
Q |
| |
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||||||||| ||||| || ||| | ||| || ||||| ||||| ||||||||||||||| ||||| ||| |||||| |||||||| || || || || |
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| T |
31597326 |
ccagtaatcatctcttgcaactctaagtctcagtgttgcattgttccattcaagaatacgatatttcacgaaattgatcgttatcttcgggacttttcct |
31597425 |
T |
|
| Q |
344 |
tcgcatgtaagctccatattaggatcagaaacaccacaa |
382 |
Q |
| |
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||||||||||||| |||||||||||| |||||||||||| |
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| T |
31597426 |
tcgcatgtaagcttcatattaggatcggaaacaccacaa |
31597464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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