View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18982_low_33 (Length: 391)
Name: NF18982_low_33
Description: NF18982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18982_low_33 |
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Alignment Details
Target: chr3 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 1 - 372
Target Start/End: Complemental strand, 53540544 - 53540173
Alignment:
| Q |
1 |
aaattggttaagaaaagcaaaagttagtttccgcagaacttcacattattttgattttttgtgtatagaattggaattaaataatgattttcacgcatac |
100 |
Q |
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| T |
53540544 |
aaattggttaagaaaagcaaaagttagtttccgcagaacttcacattattttgattttttgtgtatagaattggaattaaataatgatttccactcatac |
53540445 |
T |
|
| Q |
101 |
catattaattatcagatatatcctccccttcattgttctgataacactcagcctcgaaatcttcatgatgaaggaaactcaatccatcatcaactgtttc |
200 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53540444 |
catattcattatcagatatatcctccccttcattgttctgataacactcagcctcgaaatcttcatgatgaaggaaactcaatccatcatcaactgtttc |
53540345 |
T |
|
| Q |
201 |
tgctatgttgcctcctacatctgcatcataggaattgtgtaagaagttgttgttatatcaaatattaaaattcacctggcctgggaaaattagacaattc |
300 |
Q |
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| T |
53540344 |
tgctatgttgccttctacatctgcatcataggaattgtgtaagaagttgttgttatatcaaatattaaaattcacctggcctgggaaaattagacaattc |
53540245 |
T |
|
| Q |
301 |
atgaatgtagtggcaattctgatgtcaaattaccataattgttttcaggaatgtcagaaacctcgccgttct |
372 |
Q |
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||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |
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| T |
53540244 |
atgaacgcagtggcaattctgatgtcaaattaccataattgttttcaggaatgtcggaaacctcaccgttct |
53540173 |
T |
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