View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18982_low_36 (Length: 379)
Name: NF18982_low_36
Description: NF18982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18982_low_36 |
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| [»] scaffold0436 (1 HSPs) |
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| [»] scaffold0219 (1 HSPs) |
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Alignment Details
Target: scaffold0436 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: scaffold0436
Description:
Target: scaffold0436; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 19 - 370
Target Start/End: Original strand, 6015 - 6366
Alignment:
| Q |
19 |
gttgtggcttcatattctacaagcatcgaagataaagtcaaacgatgaaaagatacaaataataattgctaaattaacataaatactactaacacaagaa |
118 |
Q |
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| T |
6015 |
gttgtggcttcatattctacaagcatcgaagataaagtcatacgatgaaaagatacaaataataatttctaaattaacataaatactactaacacaagaa |
6114 |
T |
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| Q |
119 |
ggcttcacccatagccatggccatgtgaagaaaaaattcctacaagatgattttttgggcacnnnnnnnncaaatgcgtcttatctaaagtggcagtacc |
218 |
Q |
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| T |
6115 |
ggcttcacccatagccatggccatgtgaagaaaaaattcctacaagacaattttccgggcacaaaacaaacaaatgcgccttatctaaagtggcagtacc |
6214 |
T |
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| Q |
219 |
aaacatatactgatacactcgtatccgagcacaagttgtacctgaatggagacaaattaacaataaatatgcactagcagtaagaaagaacatatggcat |
318 |
Q |
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| T |
6215 |
aaacatatactgatacactcgtatccgagcacaagttgtacctgaatggagacaaattaacaataaatatgcactagtagtaagaaagaacatatggcat |
6314 |
T |
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| Q |
319 |
caggacaacataaaggtgaacgtaaaaaaggaatcaaaagctagagtataat |
370 |
Q |
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| T |
6315 |
caggacaacataaaggtgaacgtaaaaaaggaatcaaaagctagagtataat |
6366 |
T |
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Target: scaffold0219 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: scaffold0219
Description:
Target: scaffold0219; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 271 - 370
Target Start/End: Complemental strand, 3923 - 3824
Alignment:
| Q |
271 |
caaattaacaataaatatgcactagcagtaagaaagaacatatggcatcaggacaacataaaggtgaacgtaaaaaaggaatcaaaagctagagtataat |
370 |
Q |
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| T |
3923 |
caaattaacaataaatatgcactagcagtaagaaagaacatatggcatcaagacaacataaagatgaacgtaaaaaaggaatcaaaagctagagtataat |
3824 |
T |
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