View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18982_low_38 (Length: 366)
Name: NF18982_low_38
Description: NF18982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18982_low_38 |
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Alignment Details
Target: chr7 (Bit Score: 203; Significance: 1e-111; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 36724482 - 36724252
Alignment:
| Q |
1 |
tctgcaatgacgaacgagactttatttttacaaaaacatattggttctctcctctttgtgatgttgacataggggaagcatctgatttgcatacggcttt |
100 |
Q |
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| T |
36724482 |
tctgcaatgacgcatgagactttatttttacaaaaacatattggttctctcctctttgtgatgttaacataggggaagcatctgatttgcatacggcttt |
36724383 |
T |
|
| Q |
101 |
ggagtggacatcagaccttcaatttgataatacagatttttctctagactttgtgaaagatgtggatgctcttagaacaagcatataagataatggtgaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| | ||||| |
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| T |
36724382 |
ggagtggacatcagaccttcaatttgataatacagatttttctctagactctgtgaaggatgtggatgctcttagaacaagcatataagatagtagtgaa |
36724283 |
T |
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| Q |
201 |
tttagatgcattatagatgcttgtagacagt |
231 |
Q |
| |
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||||||||||||||||||||||||||||||| |
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| T |
36724282 |
tttagatgcattatagatgcttgtagacagt |
36724252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 31 - 273
Target Start/End: Original strand, 712072 - 712314
Alignment:
| Q |
31 |
caaaaacatattggttctctcctctttgtgatgttgacataggggaagcatctgatttgcatacggctttggagtggacatcagaccttcaatttgataa |
130 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| | | ||| |||||| ||||||| ||||||||| |||||||||||||||| |
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| T |
712072 |
caaaaacatattggttctctcctctttgtgatgttgacataggggaaggagtttcttttcatacgactttggaatggacatcataccttcaatttgataa |
712171 |
T |
|
| Q |
131 |
tacagatttttctctagactttgtgaaagatgtggatgctcttagaacaagcatataagataatggtgaatttagatgcattatagatgcttgtagacag |
230 |
Q |
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| ||||||| ||||||||| | ||| | |||||||||| |||||||| | || |||||| | |||||||| |||| |||||| ||| |||||| || |
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| T |
712172 |
tgtagattttgctctagactctaagaaggttgtggatgcttttagaacatgtgtagaagatagttgtgaatttggatgtattatacttgcatgtagatag |
712271 |
T |
|
| Q |
231 |
ttatttcatagtagatttcaaaactctcaaattgagtttaata |
273 |
Q |
| |
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|| ||||| | ||||||| |||||||||| |||||||||||| |
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| T |
712272 |
ttgtttcaaaatagattttaaaactctcatgttgagtttaata |
712314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 218 - 349
Target Start/End: Complemental strand, 36723895 - 36723764
Alignment:
| Q |
218 |
tgcttgtagacagttatttcatagtagatttcaaaactctcaaattgagtttaataaagtcaggctaatgaggttgctcatgagttagctcagatagtcc |
317 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| || |||||||||||| |||||| |||||| | ||||||| ||||||||||||||||||| |
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| T |
36723895 |
tgcttgtagacagttatttcatagtagatttcaaaactcttaagttgagtttaatagagtcagactaatgggattgctcacgagttagctcagatagtcc |
36723796 |
T |
|
| Q |
318 |
cacataatactaactcccacacctatgatgat |
349 |
Q |
| |
|
|||||||||||| ||| ||||||||||||||| |
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| T |
36723795 |
cacataatactagctctcacacctatgatgat |
36723764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 18 - 351
Target Start/End: Original strand, 717269 - 717603
Alignment:
| Q |
18 |
gactttatttttacaaaaacatattggttctctcctctttgtgatgttgacataggggaagcatctgatttgcatacggctttggagtggacatcagacc |
117 |
Q |
| |
|
|||||| || || |||||| || ||||||||||||||||||||||||| |||||||||||| | || ||| |||||| |||| ||||||||||| ||| |
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| T |
717269 |
gactttgttcttgcaaaaaaatcttggttctctcctctttgtgatgttaacataggggaagtagttggtttacatacgattttgaagtggacatcacacc |
717368 |
T |
|
| Q |
118 |
ttcaatttgataatacagatttttctctagactttgtgaaagatgtggatgctcttagaacaagcatataagataatggtgaatttagatgcattataga |
217 |
Q |
| |
|
|||||||||||||| |||||| ||||||||| | ||| | ||| |||||| |||||| | | || ||||| | |||||||| |||| ||||||| |
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| T |
717369 |
ttcaatttgataatgtagatttagctctagactctaagaaggttgttgatgcttttagaagatgtgtaggagatagtagtgaatttggatgtattatagt |
717468 |
T |
|
| Q |
218 |
tgcttgtagacagttatttcatagtagatttcaaaactctcaaattgagtttaata-aagtcaggctaatgaggttgctcatgagttagctcagatagtc |
316 |
Q |
| |
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|| |||||||| ||||| || |||||||||||||||||||| |||||||||||| || || ||||||| | | || | ||||||||||| |||| | |
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| T |
717469 |
tgaatgtagacaattattccaaagtagatttcaaaactctcatgttgagtttaataggagacaagctaatgggatcacttacgagttagctcatatagcc |
717568 |
T |
|
| Q |
317 |
ccacataatactaactcccacacctatgatgatgt |
351 |
Q |
| |
|
||||||||| ||| || | ||| ||||||||||| |
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| T |
717569 |
ccacataatgctagatctctcacttatgatgatgt |
717603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 83 - 273
Target Start/End: Original strand, 14541058 - 14541248
Alignment:
| Q |
83 |
tgatttgcatacggctttggagtggacatcagaccttcaatttgataatacagatttttctctagactttgtgaaagatgtggatgctcttagaacaagc |
182 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||| | ||||||||||||||| | ||| |||||||||| |||||||| |
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| T |
14541058 |
tgatttgcatacggctttggagtggacatcataccttcaatttgataatgtatatttttctctagactcttagaagattgtggatgcttttagaacatat |
14541157 |
T |
|
| Q |
183 |
atataagataatggtgaatttagatgcattatagatgcttgtagacagttatttcatagtagatttcaaaactctcaaattgagtttaata |
273 |
Q |
| |
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|| |||||||| || |||||||||| |||||||||| ||||||||| | ||||| |||| ||| ||||||||| ||||||||||||| |
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| T |
14541158 |
gtagaagataatagtaaatttagatgtattatagatgtttgtagacaagtgtttcaaagtaattttaaaaactctcgtattgagtttaata |
14541248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 41 - 140
Target Start/End: Complemental strand, 2087632 - 2087537
Alignment:
| Q |
41 |
ttggttctctcctctttgtgatgttgacataggggaagcatctgatttgcatacggctttggagtggacatcagaccttcaatttgataatacagatttt |
140 |
Q |
| |
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||||||||||||||||||||||||||| || || |||||| ||||||||| ||||| | |||||||||||||||||||||||||| | ||||||| |
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| T |
2087632 |
ttggttctctcctctttgtgatgttgatattggagaagcag----tttgcatacaactttgcaatggacatcagaccttcaatttgataaaatagatttt |
2087537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 41 - 103
Target Start/End: Original strand, 36474006 - 36474068
Alignment:
| Q |
41 |
ttggttctctcctctttgtgatgttgacataggggaagcatctgatttgcatacggctttgga |
103 |
Q |
| |
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|||||| || ||||||||||||||||| |||||||||||| | ||||||||||||| |||| |
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| T |
36474006 |
ttggttttcccctctttgtgatgttgatataggggaagcaatgggtttgcatacggctctgga |
36474068 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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