View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18982_low_41 (Length: 352)
Name: NF18982_low_41
Description: NF18982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18982_low_41 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 1 - 352
Target Start/End: Complemental strand, 54221263 - 54220905
Alignment:
| Q |
1 |
atagtggaggtgagcataacagagtggcaaaacaactttcataacaacgcttaaggcacttgtcctaagtgtatgtttcaatagatttgctagatg---- |
96 |
Q |
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| T |
54221263 |
atagtggaggtgagcataacagagtggcaaaacaactttcatgacaacgcttaaggcacttgtcctaagtgtatgtttcaatagatttgctagatgggga |
54221164 |
T |
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| Q |
97 |
---caggatcaacaatgaaaagcagaatttaaggaagttaaattagaatctatgttggaagacatgagatgacgagaacagatctttaccggaatctcat |
193 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| |
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| T |
54221163 |
catcaggatcaacaatgaaaagcagaatttaaggaagttaaattagaatctatgttgaaagacatgagatgacaagaacagatctttaccggaatctcat |
54221064 |
T |
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| Q |
194 |
tcattcccttttttccataccctttttcaggaggaacaatcacagttcgctgcaaccatcattcaagagaaaaataagaataagaaaataaatgaaatgc |
293 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54221063 |
tcattcccttttttccataccctttttcaggaggaacaatcacagttcgctgcaaccatcattcaagagaaaaataagaataagaaaataaatgaaatgc |
54220964 |
T |
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| Q |
294 |
attattagctaataaaaacattagatgacgcactagaacaaaatcaagaggggtgtttc |
352 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
54220963 |
atttttagctaataaaaacattagatgacgcactagaacaaaatcaaaaggggtgtttc |
54220905 |
T |
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