View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18982_low_43 (Length: 350)
Name: NF18982_low_43
Description: NF18982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18982_low_43 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 33 - 350
Target Start/End: Complemental strand, 36026308 - 36025991
Alignment:
| Q |
33 |
tatctccatactacattaccagaagcatttgtggaaaaatatcatattctggaacgtcctcttannnnnnnnnnnnngatagtactagaacgtcctctta |
132 |
Q |
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| T |
36026308 |
tatctccatactacattaccagaagcatttgtggaaaaatatcatattctggaacgtcctcttatttttatttttttgatagtactagaacgtcctctta |
36026209 |
T |
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| Q |
133 |
ttaaatatcaactgacagtaaaaccatagttgaatgaagagaattaataaaagaataagagaaccggggaaaaatattgtgtcggatttcgtaaagcaag |
232 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36026208 |
ttaaatatcaactgacagtaagaccatagttgaatgaagagaattaataaaagaataagagaaccggggaaaaatattgtgtcggatttcgtaaagcaag |
36026109 |
T |
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| Q |
233 |
aacccacaagagatccaactcaatctattcgataataatttcttctgaatcggaatactacaaatacctccaaacatatcaaacttgagaggacggattt |
332 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
36026108 |
aacccacaagagatccaactcaatctattcgataataatttcttctgaatcggaatactacaaatacctccaaacatatcaaacttgagaggacagattt |
36026009 |
T |
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| Q |
333 |
taggttgaggttgtattt |
350 |
Q |
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|||||||||||||||||| |
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| T |
36026008 |
taggttgaggttgtattt |
36025991 |
T |
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