View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18982_low_44 (Length: 347)
Name: NF18982_low_44
Description: NF18982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18982_low_44 |
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Alignment Details
Target: chr6 (Bit Score: 293; Significance: 1e-164; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 1 - 330
Target Start/End: Complemental strand, 13077647 - 13077318
Alignment:
| Q |
1 |
gttaaagattgcaaagagtgaagaagagaaagagaagtatcaaatggaggaaaggactacaccatttgacaaggcttgtggatccaaaagagtagcaaat |
100 |
Q |
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| T |
13077647 |
gttaaagattgcaaagagtgaagaagagaaagagaagtatcaaatggaggaaaggactacaccatttgacaaggcttgtggatccaaaagggtagcagat |
13077548 |
T |
|
| Q |
101 |
aaagtgcatgaaaaagtacatgaaactccattgagagaacatcaaagagaaccagaagaattcacttctaaaattgagttggattcacctactacatttg |
200 |
Q |
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| T |
13077547 |
aaagtgcatgaaaaagtacatgaaactccattgagagaacatcaaagagaaccagaagaattcacttctaaaattgagttggattcacctactacatttg |
13077448 |
T |
|
| Q |
201 |
aaaaacctccaagnnnnnnngttgaaaggaaagaggctcatgaatttacaaggccaaaaaacatgagcaatgaaattccaaaagtagaagaagtacaaga |
300 |
Q |
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| T |
13077447 |
aaaaacctccaagaaaaaaagttgaaaggaaagaggctcatgaatttacaaggccaaaaatcatgagcagtgaaattccaaaagtagaagaagtacaaga |
13077348 |
T |
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| Q |
301 |
agacaaagaggtggaaaggcacattcattt |
330 |
Q |
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| T |
13077347 |
agacaaagaggtggaaaggcacattcattt |
13077318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 1 - 330
Target Start/End: Complemental strand, 13073443 - 13073114
Alignment:
| Q |
1 |
gttaaagattgcaaagagtgaagaagagaaagagaagtatcaaatggaggaaaggactacaccatttgacaaggcttgtggatccaaaagagtagcaaat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || |
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| T |
13073443 |
gttaaagattgcaaagagtgaagaagagaaagagaagtatcaaatggaggaaaggactacaccatttgacaaggcttgtggatccaaaagggtagcagat |
13073344 |
T |
|
| Q |
101 |
aaagtgcatgaaaaagtacatgaaactccattgagagaacatcaaagagaaccagaagaattcacttctaaaattgagttggattcacctactacatttg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| |||||||||||| |
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| T |
13073343 |
aaagtgcatgaaaaagtacatgaaactccattgagagaacatcaaagataaccagaagaattcacttttaaaattgagttggattcatctactacatttg |
13073244 |
T |
|
| Q |
201 |
aaaaacctccaagnnnnnnngttgaaaggaaagaggctcatgaatttacaaggccaaaaaacatgagcaatgaaattccaaaagtagaagaagtacaaga |
300 |
Q |
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| T |
13073243 |
aaaaacctccaagaaaaaaagttgaaaggaaagaggctcatgaatttacaaggccattaatcattagcattgaaattccaaaagtagaagaagtacaaga |
13073144 |
T |
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| Q |
301 |
agacaaagaggtggaaaggcacattcattt |
330 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
13073143 |
agacaaagaggtggaaaggcacattcattt |
13073114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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