View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18982_low_45 (Length: 345)
Name: NF18982_low_45
Description: NF18982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18982_low_45 |
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Alignment Details
Target: chr6 (Bit Score: 263; Significance: 1e-146; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 1 - 335
Target Start/End: Original strand, 13077662 - 13077996
Alignment:
| Q |
1 |
cagaactattttttcttcaatagtctttggtgtttgaaatcctttcttatcattcttctcttgcacacattgttgagctttatcctctttttctttagaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13077662 |
cagaactattttttcttcaatagtctttggtgtttgaaatcctttcttatcattcttctcttgcacacattgttgagctttatcctctttttctttagaa |
13077761 |
T |
|
| Q |
101 |
attgtttcttctagtacctgaatgtgctttttcccctcaacnnnnnnnnnnnnnnnnnnnncaactgtaattggtggttcaacatccatcttaggagcga |
200 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || |
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| T |
13077762 |
attgtttcttctagtacctgaatgtgctttttcccctcaactttttttatttgagttttttcaactgtaattggtggttcaacatccatcttaggagtga |
13077861 |
T |
|
| Q |
201 |
cttgttctgattctctttgatatcctctcttagaagcctcttgcattttttccgactccctttttgatccactagccatgtcaaactgtggagttgtttc |
300 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13077862 |
cttgttctgattctctttgatatcgtctcttagaagcctcttgcattttttccgactccctttttgatccactagccatgtcaaactgtggagttgtttc |
13077961 |
T |
|
| Q |
301 |
cattattttaggcttcttttcttctgtggtctgtg |
335 |
Q |
| |
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|||||||||||||||||||||||||||||| |||| |
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| T |
13077962 |
cattattttaggcttcttttcttctgtggtttgtg |
13077996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 335
Target Start/End: Original strand, 13073458 - 13073792
Alignment:
| Q |
1 |
cagaactattttttcttcaatagtctttggtgtttgaaatcctttcttatcattcttctcttgcacacattgttgagctttatcctctttttctttagaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13073458 |
cagaactattttttcttcaatagtctttggtgtttgaaatcctttcttatcattcttctcttgcacacattgttgagctttatcctctttttctttagaa |
13073557 |
T |
|
| Q |
101 |
attgtttcttctagtacctgaatgtgctttttcccctcaacnnnnnnnnnnnnnnnnnnnncaactgtaattggtggttcaacatccatcttaggagcga |
200 |
Q |
| |
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||||||||||||||||||||||||||||||| ||||||||| ||| |||||||||||||||||||| ||||||||||| || |
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| T |
13073558 |
attgtttcttctagtacctgaatgtgcttttacccctcaactttttttatttgagttttttcaaatgtaattggtggttcaacatacatcttaggagaga |
13073657 |
T |
|
| Q |
201 |
cttgttctgattctctttgatatcctctcttagaagcctcttgcattttttccgactccctttttgatccactagccatgtcaaactgtggagttgtttc |
300 |
Q |
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|||||| ||||||||||| ||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13073658 |
cttgttatgattctctttaatatcatctcttagaagcctctagcattttttccgactccctttttgatccactagccatgtcaaactgtggagttgtttc |
13073757 |
T |
|
| Q |
301 |
cattattttaggcttcttttcttctgtggtctgtg |
335 |
Q |
| |
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|||||||||||||||||||||||||||||| |||| |
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|
| T |
13073758 |
cattattttaggcttcttttcttctgtggtttgtg |
13073792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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