View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18982_low_49 (Length: 332)

Name: NF18982_low_49
Description: NF18982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18982_low_49
NF18982_low_49
[»] chr1 (2 HSPs)
chr1 (18-316)||(24285264-24285561)
chr1 (134-316)||(4649816-4650000)
[»] chr2 (13 HSPs)
chr2 (10-316)||(31067002-31067311)
chr2 (162-316)||(8945188-8945341)
chr2 (115-316)||(25867593-25867796)
chr2 (257-316)||(17840662-17840721)
chr2 (266-316)||(18594179-18594229)
chr2 (195-316)||(17398928-17399050)
chr2 (189-234)||(34181516-34181561)
chr2 (258-316)||(15325549-15325608)
chr2 (10-122)||(17840860-17840974)
chr2 (195-231)||(28645297-28645333)
chr2 (257-316)||(28645226-28645285)
chr2 (266-316)||(45550781-45550831)
chr2 (269-310)||(19125223-19125264)
[»] chr3 (4 HSPs)
chr3 (170-316)||(35510763-35510911)
chr3 (187-316)||(10081828-10081955)
chr3 (187-316)||(10188753-10188880)
chr3 (25-133)||(35510634-35510744)
[»] chr4 (2 HSPs)
chr4 (147-316)||(11864636-11864804)
chr4 (205-310)||(11288880-11288986)
[»] chr7 (5 HSPs)
chr7 (147-316)||(21383040-21383208)
chr7 (189-316)||(5299662-5299790)
chr7 (195-316)||(2392290-2392412)
chr7 (196-310)||(9732259-9732373)
chr7 (100-211)||(11917952-11918065)
[»] chr5 (4 HSPs)
chr5 (257-316)||(19006201-19006260)
chr5 (10-66)||(27598969-27599025)
chr5 (266-316)||(24395246-24395296)
chr5 (259-316)||(14053195-14053252)
[»] chr6 (5 HSPs)
chr6 (115-221)||(3904274-3904382)
chr6 (266-316)||(10374269-10374319)
chr6 (257-316)||(2944635-2944693)
chr6 (195-234)||(13553874-13553913)
chr6 (257-316)||(14448002-14448060)
[»] scaffold0135 (1 HSPs)
scaffold0135 (199-302)||(41236-41340)
[»] chr8 (4 HSPs)
chr8 (257-312)||(38801754-38801810)
chr8 (104-210)||(38801860-38801968)
chr8 (270-316)||(12376347-12376393)
chr8 (10-93)||(38801996-38802080)


Alignment Details
Target: chr1 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 18 - 316
Target Start/End: Original strand, 24285264 - 24285561
Alignment:
Q  18 aaaaatggacagactaaaaccctgataaacactttgacaattgcagctttagtagtttctcagatttagagtcttcttttgcatagcctgagaaagcatg 117  Q
    ||||||||||||||||||||||||||| |||||||||||||||| |||| ||||||||||||| ||||| |||||| || |||||||||| ||||||| |    
T  24285264 aaaaatggacagactaaaaccctgatagacactttgacaattgcggcttcagtagtttctcaggtttagtgtcttccttagcatagcctg-gaaagcacg 24285362  T
Q  118 ggcttaataagcaactcgggttaaacaatcagctgatccaaactgtcttcagcacattattccaaaagtaaatatagtgtttccttaaatgttacaacat 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||    
T  24285363 ggcttaataagcaactcgggttaaacaatcagctgatccaaactgtcttcaacacattattccaaaagcaaatatagtgtttccttaaatgttacaacat 24285462  T
Q  218 cacacttaagaaacacgcaaggaacaaccgccttctacagcttctagaaaacacacgcttcttggtcaacactccacgtgaatcaaatcttcatagaat 316  Q
    ||||||||||||||||||||||||||||| ||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  24285463 cacacttaagaaacacgcaaggaacaaccaccttctacaacttctagaaaatacacgcttcttggtcaacactccacgtgaatcaaatcttcatagaat 24285561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 134 - 316
Target Start/End: Complemental strand, 4650000 - 4649816
Alignment:
Q  134 cgggttaaacaatcagctgatccaa-actgtcttcagcacattattccaaaagtaaatatagtgtttccttaaatgttacaacatcacacttaagaaaca 232  Q
    |||| ||||||  |||||||||||| || |||||||||||| |||||   ||| | ||||| |||||||||||||||||||||||||| ||||| |||||    
T  4650000 cgggctaaacacacagctgatccaatacggtcttcagcacaatattctggaagcatatatattgtttccttaaatgttacaacatcacccttaaaaaaca 4649901  T
Q  233 cg-caaggaacaaccgccttctacagcttctagaaaacacacgcttcttggtcaacactccacgtgaatcaaatcttcatagaat 316  Q
    || ||||    ||||||||   |  ||||||||||||||||||||||||| ||||||| |||| ||||| |||||||||| ||||    
T  4649900 cgacaagcttaaaccgcctatcattgcttctagaaaacacacgcttcttgatcaacacaccacatgaataaaatcttcattgaat 4649816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 118; Significance: 4e-60; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 10 - 316
Target Start/End: Complemental strand, 31067311 - 31067002
Alignment:
Q  10 tcacagacaaaaatggacagactaaaaccctgataaacactttgacaattgcagctttagtagt-ttctcagatttagagtcttcttttgcatagcctga 108  Q
    ||||| ||||||||||||| ||||||||||| ||  | ||||| | |||||| |||| ||| || |||| || |||||||||||| |||  ||||||||     
T  31067311 tcacaaacaaaaatggacatactaaaaccctaattgatactttcagaattgcggcttcagtggtcttcttaggtttagagtcttcctttatatagcctgg 31067212  T
Q  109 gaa-agcatgggcttaataagcaactcgggttaaacaatcagctgatccaa-actgtcttcagcacattattccaaaagtaaatatagtgtttccttaaa 206  Q
    ||| ||||||||||| ||  |||| ||| | ||||||| |||||||||||| || ||||||| |||| ||||| ||||| ||||||| | ||| ||||||    
T  31067211 gaatagcatgggcttgatgggcaattcgagctaaacaagcagctgatccaatacggtcttcaacacaatattctaaaagcaaatatattattttcttaaa 31067112  T
Q  207 tgttacaacatcacacttaagaaacacgcaaggaacaaccgccttctacagcttctagaaaacacacgcttcttggtcaacactccacgtgaatcaaatc 306  Q
    |||| | |||||||||||||||||||||||| | | ||||| ||||||||||||||||||||||||| ||||||| ||||||| | ||||||||||||||    
T  31067111 tgtttcgacatcacacttaagaaacacgcaaagcataaccgtcttctacagcttctagaaaacacacacttcttgatcaacacactacgtgaatcaaatc 31067012  T
Q  307 ttcatagaat 316  Q
    ||||||||||    
T  31067011 ttcatagaat 31067002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 162 - 316
Target Start/End: Original strand, 8945188 - 8945341
Alignment:
Q  162 gtcttcagcacattattccaaaagtaaatatagtgtttccttaaatgttacaacatcacacttaagaaacacgcaaggaacaaccgccttctacagcttc 261  Q
    ||||||| || | ||||| ||| | ||||||| ||||| |||||||||||||||||||||||||||||||||||||  || ||| ||||||| ||||||     
T  8945188 gtcttcaacataatattctaaatgcaaatatattgttttcttaaatgttacaacatcacacttaagaaacacgcaaa-aataactgccttctgcagctta 8945286  T
Q  262 tagaaaacacacgcttcttggtcaacactccacgtgaatcaaatcttcatagaat 316  Q
    ||||||||| | |||||||||||||||||||||||||||||||||||||||||||    
T  8945287 tagaaaacatatgcttcttggtcaacactccacgtgaatcaaatcttcatagaat 8945341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 115 - 316
Target Start/End: Original strand, 25867593 - 25867796
Alignment:
Q  115 atgggcttaataagcaactcgggttaaacaatcagctgatccaa-actgtcttcagcacattattccaaaagtaaatatagtgtttccttaaatgttaca 213  Q
    |||||||| || ||||| ||| | ||||||  | |||||||||| || ||||| || ||| ||||||| ||| | ||||| | |||||||||||||| ||    
T  25867593 atgggcttgatgagcaaatcgagctaaacacacggctgatccaatacggtctttagtacaatattccataagcatatatattatttccttaaatgtttca 25867692  T
Q  214 acatcacacttaagaaacacg-caaggaacaaccgccttctacagcttctagaaaacacacgcttcttggtcaacactccacgtgaatcaaatcttcata 312  Q
    |||||||||||||| |||||| ||| |   |||| |||   || ||| || |||||||||||||||||||||||||||||||||||||||||||||||||    
T  25867693 acatcacacttaagtaacacggcaaagctaaaccacctatcactgctgctcgaaaacacacgcttcttggtcaacactccacgtgaatcaaatcttcata 25867792  T
Q  313 gaat 316  Q
    ||||    
T  25867793 gaat 25867796  T

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Target: chr2; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 257 - 316
Target Start/End: Complemental strand, 17840721 - 17840662
Alignment:
Q  257 gcttctagaaaacacacgcttcttggtcaacactccacgtgaatcaaatcttcatagaat 316  Q
    ||||| ||||||||||||||||||||||||||||| ||||| |||| |||||||||||||    
T  17840721 gcttccagaaaacacacgcttcttggtcaacactctacgtgtatcatatcttcatagaat 17840662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 266 - 316
Target Start/End: Original strand, 18594179 - 18594229
Alignment:
Q  266 aaacacacgcttcttggtcaacactccacgtgaatcaaatcttcatagaat 316  Q
    ||||||||||||||||| |||||||| ||||||||||||||||||||||||    
T  18594179 aaacacacgcttcttggacaacactctacgtgaatcaaatcttcatagaat 18594229  T

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Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 195 - 316
Target Start/End: Original strand, 17398928 - 17399050
Alignment:
Q  195 tgtttccttaaatgttacaacatcacacttaagaaacacg-caaggaacaaccgccttctacagcttctagaaaacacacgcttcttggtcaacactcca 293  Q
    ||||| |||||||||||||||||||| ||||||||||||| ||| |   |||| |||   || ||||||||||| |||| |||| || ||||||| |  |    
T  17398928 tgttttcttaaatgttacaacatcacgcttaagaaacacgacaaagttaaacctcctatcactgcttctagaaaccacatgcttattcgtcaacatttta 17399027  T
Q  294 cgtgaatcaaatcttcatagaat 316  Q
    ||||||||| |||||||||||||    
T  17399028 cgtgaatcatatcttcatagaat 17399050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 189 - 234
Target Start/End: Complemental strand, 34181561 - 34181516
Alignment:
Q  189 atatagtgtttccttaaatgttacaacatcacacttaagaaacacg 234  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||    
T  34181561 atatattgttttcttaaatgttacaacatcacacttaagaaacacg 34181516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 258 - 316
Target Start/End: Original strand, 15325549 - 15325608
Alignment:
Q  258 cttctagaaaacacacgcttc-ttggtcaacactccacgtgaatcaaatcttcatagaat 316  Q
    |||||||||| |||||||||| |||||||||| | ||||||||||| |||||||||||||    
T  15325549 cttctagaaatcacacgcttcgttggtcaacattgcacgtgaatcatatcttcatagaat 15325608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 10 - 122
Target Start/End: Complemental strand, 17840974 - 17840860
Alignment:
Q  10 tcacagacaaaaatggacagactaaaaccctgataaacactttgacaattgcagctttagtagt-ttctcagatttagagtcttcttttgcatagcctga 108  Q
    ||||| |||| |||||||||||||||||||| ||  ||||||| |||| ||| |||| |||||| |||| || |||| ||||||| |||  |||| ||||    
T  17840974 tcacaaacaacaatggacagactaaaaccctaattgacactttcacaaatgcggcttcagtagtattcttaggtttaaagtcttcctttatatagtctga 17840875  T
Q  109 gaa-agcatgggctt 122  Q
    ||| |||||||||||    
T  17840874 gaatagcatgggctt 17840860  T

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Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 195 - 231
Target Start/End: Complemental strand, 28645333 - 28645297
Alignment:
Q  195 tgtttccttaaatgttacaacatcacacttaagaaac 231  Q
    ||||||||||||||||| |||||||||||||||||||    
T  28645333 tgtttccttaaatgttagaacatcacacttaagaaac 28645297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 257 - 316
Target Start/End: Complemental strand, 28645285 - 28645226
Alignment:
Q  257 gcttctagaaaacacacgcttcttggtcaacactccacgtgaatcaaatcttcatagaat 316  Q
    ||||||||||| ||||| ||||||| ||||| ||||||  |||||| |||||||||||||    
T  28645285 gcttctagaaaccacacacttcttgttcaacgctccacaagaatcatatcttcatagaat 28645226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 266 - 316
Target Start/End: Original strand, 45550781 - 45550831
Alignment:
Q  266 aaacacacgcttcttggtcaacactccacgtgaatcaaatcttcatagaat 316  Q
    ||||||| ||||||||| || || ||||||||||||| |||||||||||||    
T  45550781 aaacacatgcttcttggacagcaatccacgtgaatcatatcttcatagaat 45550831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 269 - 310
Target Start/End: Original strand, 19125223 - 19125264
Alignment:
Q  269 cacacgcttcttggtcaacactccacgtgaatcaaatcttca 310  Q
    |||||||||||||| ||||| ||||||||||||| |||||||    
T  19125223 cacacgcttcttggacaacaatccacgtgaatcatatcttca 19125264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 82; Significance: 1e-38; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 170 - 316
Target Start/End: Original strand, 35510763 - 35510911
Alignment:
Q  170 cacattattccaaaagtaaatatagtgtttccttaaatgttacaacatcacacttaagaaacacgcaaggaacaaccgccttctacagcttctagaaaac 269  Q
    |||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| |||||||| |||| || ||||||||||||    
T  35510763 cacaatattccaaaagtaaatatattgtttccttaaatgttacaacatcacacttaagaaatacgcaaggcacaaccgcattctgcaacttctagaaaac 35510862  T
Q  270 ac--acgcttcttggtcaacactccacgtgaatcaaatcttcatagaat 316  Q
    ||  |||||| ||||||||||| |  ||||||||| || |||| |||||    
T  35510863 acatacgcttattggtcaacacactgcgtgaatcatattttcagagaat 35510911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 187 - 316
Target Start/End: Complemental strand, 10081955 - 10081828
Alignment:
Q  187 aaatatagtgtttccttaaatgttacaacatcacacttaagaaacacg-caaggaacaaccgccttctacagcttctagaaaacacacgcttcttggtca 285  Q
    ||||||| |||||||||||||||||||||||||||||||||||| ||| ||| | | |||  |||  ||  ||||||||||| |||||||||||||||||    
T  10081955 aaatatattgtttccttaaatgttacaacatcacacttaagaaa-acgtcaaagcaaaactacctattattgcttctagaaaccacacgcttcttggtca 10081857  T
Q  286 acactccacgtgaatcaaatcttcatagaat 316  Q
      ||||||| ||||||||||||||| |||||    
T  10081856 --actccacatgaatcaaatcttcagagaat 10081828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 187 - 316
Target Start/End: Complemental strand, 10188880 - 10188753
Alignment:
Q  187 aaatatagtgtttccttaaatgttacaacatcacacttaagaaacacg-caaggaacaaccgccttctacagcttctagaaaacacacgcttcttggtca 285  Q
    ||||||| |||||||||||||||||||||||||||||||||||| ||| ||| | | |||  |||  ||  ||||||||||| |||| ||||||||||||    
T  10188880 aaatatattgtttccttaaatgttacaacatcacacttaagaaa-acgtcaaagcaaaactacctattattgcttctagaaaccacatgcttcttggtca 10188782  T
Q  286 acactccacgtgaatcaaatcttcatagaat 316  Q
      ||||||| ||||||||||||||| |||||    
T  10188781 --actccacatgaatcaaatcttcagagaat 10188753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 133
Target Start/End: Original strand, 35510634 - 35510744
Alignment:
Q  25 gacagactaaaaccctgataaacactttgacaattgcagctttagtagt-ttctcagatttagagtcttcttttgcatagcctgagaa-agcatgggctt 122  Q
    ||||||||||||| || |||||||||||| ||||||| |||| | |||| |||| || |||||||||||| |||  ||||||| |||| |||||| ||||    
T  35510634 gacagactaaaactctaataaacactttggcaattgcggcttcattagtcttcttagctttagagtcttcctttatatagccttagaatagcatgagctt 35510733  T
Q  123 aataagcaact 133  Q
     || |||||||    
T  35510734 gatgagcaact 35510744  T

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Target: chr4 (Bit Score: 71; Significance: 4e-32; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 147 - 316
Target Start/End: Complemental strand, 11864804 - 11864636
Alignment:
Q  147 cagctgatccaaactgtcttcagcacattattccaaaagtaaatatagtgtttccttaaatgttacaacatcacacttaagaaacacg-caaggaacaac 245  Q
    ||||||||||| || |||||||||||| |||||  || | ||||| | |||||||||||||||||||||||||||||||||||||||| ||| ||  |||    
T  11864804 cagctgatccacac-gtcttcagcacaatattctgaa-gcaaataaaatgtttccttaaatgttacaacatcacacttaagaaacacgacaaagataaac 11864707  T
Q  246 cgccttctacagcttctagaaaacacacgcttcttggtcaacactccacgtgaatcaaatcttcatagaat 316  Q
    |||||   || ||||||||||| |||  |||||||||||||||||||| |||||||| |||||||||||||    
T  11864706 cgcctatcactgcttctagaaaccacgtgcttcttggtcaacactccatgtgaatcatatcttcatagaat 11864636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 205 - 310
Target Start/End: Complemental strand, 11288986 - 11288880
Alignment:
Q  205 aatgttacaacatcacacttaagaaacacgcaag-gaacaaccgccttctacagcttctagaaaacacacgcttcttggtcaacactccacgtgaatcaa 303  Q
    |||||||||| ||||||||||||||||||| ||  ||  ||||||||   |   |||||||||| || ||||||||||||||||  | ||||||||| ||    
T  11288986 aatgttacaatatcacacttaagaaacacggaacagataaaccgcctaacattacttctagaaaccatacgcttcttggtcaactttacacgtgaattaa 11288887  T
Q  304 atcttca 310  Q
    |||||||    
T  11288886 atcttca 11288880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 147 - 316
Target Start/End: Complemental strand, 21383208 - 21383040
Alignment:
Q  147 cagctgatccaaactgtcttcagcacattattccaaaagtaaatatagtgtttccttaaatgttacaacatcacacttaagaaacac-gcaaggaacaac 245  Q
    ||||||||||| || |||||||||||| |||||  || | ||||||| ||||||||||||||||||||||||||||| || ||||||  ||| |   |||    
T  21383208 cagctgatccacacggtcttcagcacaatattctgaa-gcaaatatattgtttccttaaatgttacaacatcacactcaaaaaacacaacaaagctaaac 21383110  T
Q  246 cgccttctacagcttctagaaaacacacgcttcttggtcaacactccacgtgaatcaaatcttcatagaat 316  Q
    |||| || || |||||||||||| ||| | ||||||||||| ||||||||||||||| |||||||||||||    
T  21383109 cgccatc-actgcttctagaaaaaacatgtttcttggtcaatactccacgtgaatcatatcttcatagaat 21383040  T

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Target: chr7; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 189 - 316
Target Start/End: Original strand, 5299662 - 5299790
Alignment:
Q  189 atatagtgtttccttaaatgttacaacatcacacttaagaaacacg-caaggaacaaccgccttctacagcttctagaaaacacacgcttcttggtcaac 287  Q
    ||||| |||||||||||||||||||||||||||||||||||||||  ||||    || |||||   || |||||||||||||||||||||||||||||||    
T  5299662 atatattgtttccttaaatgttacaacatcacacttaagaaacacaacaagcttaaatcgcctatcactgcttctagaaaacacacgcttcttggtcaac 5299761  T
Q  288 actccacgtgaatcaaatcttcatagaat 316  Q
    |||||| |||||| |||| ||||| ||||    
T  5299762 actccatgtgaataaaattttcattgaat 5299790  T

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Target: chr7; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 195 - 316
Target Start/End: Complemental strand, 2392412 - 2392290
Alignment:
Q  195 tgtttccttaaatgttacaacatcacacttaagaaacacg-caaggaacaaccgccttctacagcttctagaaaacacacgcttcttggtcaacactcca 293  Q
    ||||| |||||||||||||||||||||||||||||||||| ||  ||  ||||||||  ||| |||||| ||||  |||||||||||||||||| || ||    
T  2392412 tgttttcttaaatgttacaacatcacacttaagaaacacggcacagataaaccgcctattactgcttcttgaaactacacgcttcttggtcaactcttca 2392313  T
Q  294 cgtgaatcaaatcttcatagaat 316  Q
    ||||||||| |||||||||||||    
T  2392312 cgtgaatcatatcttcatagaat 2392290  T

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Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 196 - 310
Target Start/End: Complemental strand, 9732373 - 9732259
Alignment:
Q  196 gtttccttaaatgttacaacatcacacttaagaaacacgcaaggaacaaccgccttctacagcttctagaaaacacacgcttcttggtcaacactccacg 295  Q
    |||||||||||| || ||||| || |||||||||||||| ||| |  |||||| |  | | |||||||||||  |||||||||||||||||| || | ||    
T  9732373 gtttccttaaatatttcaacaacaaacttaagaaacacgtaagtacaaaccgcatatttctgcttctagaaacaacacgcttcttggtcaactcttcgcg 9732274  T
Q  296 tgaatcaaatcttca 310  Q
    |||| ||||||||||    
T  9732273 tgaaacaaatcttca 9732259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 211
Target Start/End: Complemental strand, 11918065 - 11917952
Alignment:
Q  100 atagcctgagaaa-gcatgggcttaataagcaactcgggttaaacaatcagctgatccaa-actgtcttcagcacattattccaaaagtaaatatagtgt 197  Q
    ||||||| ||||| |||||||||| || | ||| || || |||||| ||||||||||||| || ||||||| |||| ||||||  ||  | ||||| |||    
T  11918065 atagcctaagaaacgcatgggcttgatgaacaattcaggctaaacactcagctgatccaatacggtcttcaacacaatattccggaaccatatatattgt 11917966  T
Q  198 ttccttaaatgtta 211  Q
    ||||||||||||||    
T  11917965 ttccttaaatgtta 11917952  T

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Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 257 - 316
Target Start/End: Complemental strand, 19006260 - 19006201
Alignment:
Q  257 gcttctagaaaacacacgcttcttggtcaacactccacgtgaatcaaatcttcatagaat 316  Q
    |||||||||||||| ||||||||||||||||| |||||||||||||||||||||| ||||    
T  19006260 gcttctagaaaacaaacgcttcttggtcaacattccacgtgaatcaaatcttcattgaat 19006201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 66
Target Start/End: Original strand, 27598969 - 27599025
Alignment:
Q  10 tcacagacaaaaatggacagactaaaaccctgataaacactttgacaattgcagctt 66  Q
    ||||| |||| |||||||| |||||||| || ||| |||||||||||||||||||||    
T  27598969 tcacaaacaacaatggacaaactaaaactctaatagacactttgacaattgcagctt 27599025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 266 - 316
Target Start/End: Original strand, 24395246 - 24395296
Alignment:
Q  266 aaacacacgcttcttggtcaacactccacgtgaatcaaatcttcatagaat 316  Q
    ||||||||||||||||| ||  | ||||||||||||| |||||||||||||    
T  24395246 aaacacacgcttcttggacagtaatccacgtgaatcatatcttcatagaat 24395296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 316
Target Start/End: Original strand, 14053195 - 14053252
Alignment:
Q  259 ttctagaaaacacacgcttcttggtcaacactccacgtgaatcaaatcttcatagaat 316  Q
    |||||||||  | |||||||||||||||| || | |||||| ||||||||||||||||    
T  14053195 ttctagaaactaaacgcttcttggtcaactcttcgcgtgaaacaaatcttcatagaat 14053252  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 115 - 221
Target Start/End: Complemental strand, 3904382 - 3904274
Alignment:
Q  115 atgggcttaataagcaactcgggttaaacaat-cagctgatccaa-actgtcttcagcacattattccaaaagtaaatatagtgtttccttaaatgttac 212  Q
    |||||||| |||||||| |  || |||||||  |||||||||||| || |||||||||||| ||||||| |||   ||||| ||||||||||||||||||    
T  3904382 atgggcttgataagcaaattaggctaaacaacacagctgatccaatacggtcttcagcacaatattccagaagcgtatatattgtttccttaaatgttac 3904283  T
Q  213 aacatcaca 221  Q
    |||||||||    
T  3904282 aacatcaca 3904274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 266 - 316
Target Start/End: Complemental strand, 10374319 - 10374269
Alignment:
Q  266 aaacacacgcttcttggtcaacactccacgtgaatcaaatcttcatagaat 316  Q
    |||||||| |||||||| |||||||| |||||||||| |||||||||||||    
T  10374319 aaacacacacttcttggacaacactctacgtgaatcatatcttcatagaat 10374269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 257 - 316
Target Start/End: Original strand, 2944635 - 2944693
Alignment:
Q  257 gcttctagaaaacacacgcttcttggtcaacactccacgtgaatcaaatcttcatagaat 316  Q
    ||||||||||| |||||||||||||| |||||||| || ||||||| || ||||||||||    
T  2944635 gcttctagaaa-cacacgcttcttggacaacactctacatgaatcatattttcatagaat 2944693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 195 - 234
Target Start/End: Original strand, 13553874 - 13553913
Alignment:
Q  195 tgtttccttaaatgttacaacatcacacttaagaaacacg 234  Q
    ||||| ||||||| ||||||||||||||||||||||||||    
T  13553874 tgttttcttaaatattacaacatcacacttaagaaacacg 13553913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 257 - 316
Target Start/End: Complemental strand, 14448060 - 14448002
Alignment:
Q  257 gcttctagaaaacacacgcttcttggtcaacactccacgtgaatcaaatcttcatagaat 316  Q
    ||||||||||| |||||  ||||||||||||| | || ||||||||||||||||||||||    
T  14448060 gcttctagaaa-cacacttttcttggtcaacatttcatgtgaatcaaatcttcatagaat 14448002  T

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Target: scaffold0135 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0135
Description:

Target: scaffold0135; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 199 - 302
Target Start/End: Original strand, 41236 - 41340
Alignment:
Q  199 tccttaaatgttacaacatcacacttaagaaacacg-caaggaacaaccgccttctacagcttctagaaaacacacgcttcttggtcaacactccacgtg 297  Q
    |||||||||||||||||||||||||||||||||||| ||  ||   |||||||   |  ||||||||||| |||||| ||||||||| || || ||||||    
T  41236 tccttaaatgttacaacatcacacttaagaaacacgtcacagatagaccgcctaacattgcttctagaaagcacacgtttcttggtccactcttcacgtg 41335  T
Q  298 aatca 302  Q
    |||||    
T  41336 aatca 41340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 257 - 312
Target Start/End: Complemental strand, 38801810 - 38801754
Alignment:
Q  257 gcttctagaaaacacacgcttct-tggtcaacactccacgtgaatcaaatcttcata 312  Q
    ||||||||||||||||||||| | |||||||||| | |||||||||||| |||||||    
T  38801810 gcttctagaaaacacacgcttttctggtcaacacactacgtgaatcaaaacttcata 38801754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 104 - 210
Target Start/End: Complemental strand, 38801968 - 38801860
Alignment:
Q  104 cctgagaa-agcatgggcttaataagcaactcgggttaaacaatcagctgatccaa-actgtcttcagcacattattccaaaagtaaatatagtgtttcc 201  Q
    |||||||| ||||||||||| ||   ||| ||||| ||||||  |||||||||||| || |||||||||||| ||||||| ||  | ||||| |||||||    
T  38801968 cctgagaatagcatgggcttgatggacaattcgggctaaacacacagctgatccaatacggtcttcagcacaatattccagaaacatatatattgtttcc 38801869  T
Q  202 ttaaatgtt 210  Q
    |||||||||    
T  38801868 ttaaatgtt 38801860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 270 - 316
Target Start/End: Complemental strand, 12376393 - 12376347
Alignment:
Q  270 acacgcttcttggtcaacactccacgtgaatcaaatcttcatagaat 316  Q
    |||||||||||||  |||| ||||||||||||||||||||| |||||    
T  12376393 acacgcttcttgggaaacaatccacgtgaatcaaatcttcagagaat 12376347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 93
Target Start/End: Complemental strand, 38802080 - 38801996
Alignment:
Q  10 tcacagacaaaaatggacagactaaaaccctgataaacactttgacaattgcagctttagtagt-ttctcagatttagagtcttc 93  Q
    ||||| |||| |||||||| ||||||||||| ||  ||||||| | |||||| |||| |||||| |||| || ||||||||||||    
T  38802080 tcacaaacaacaatggacatactaaaaccctaattgacactttcagaattgcggcttcagtagtcttcttaggtttagagtcttc 38801996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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