View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18982_low_5 (Length: 699)
Name: NF18982_low_5
Description: NF18982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18982_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 593; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 593; E-Value: 0
Query Start/End: Original strand, 9 - 683
Target Start/End: Complemental strand, 34015825 - 34015158
Alignment:
| Q |
9 |
acatcatcacaactatgctctagaccagtgaaccaacacatcctctatggtgcacaagtaattaacaacctata--attttgagattatacaaccaatag |
106 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
34015825 |
acatcataacaactatgctctagaccagtgaaccaacacatcctctatggtgcacaagtaattaacaacctatataattttgagattatacaaccaatag |
34015726 |
T |
|
| Q |
107 |
tatttgctccaaatgatttaacttaattcttaaacggacaagaggtaaagataggataaatggtcaacctcgttcctgccacgttagtaacataacatac |
206 |
Q |
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|||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34015725 |
tatttgcttcaaatcatttaacttaattcttaaacggacaagaggtaaagataggataaatggtcaacctcgttcctgccacgttagtaacataacatac |
34015626 |
T |
|
| Q |
207 |
ataatgtatgaaaagggtaacaatacacaagtaataggacttaagagacctatatatatcatgtattttgcctaaaattaaagaaataaattaaagaaga |
306 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| |||| |||||| |
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| T |
34015625 |
ataatgtatgaaaaggggaacaatacacaagtaataggacttaagagacctatat----catgtattttgcctaaaa-----gaaatagattagagaaga |
34015535 |
T |
|
| Q |
307 |
aaaactcaccataacatgaaacctgaagaaagggaaagcttgacaacaggccaaagatcttggaaagctaaaaatgagaaacctttccaagtatcagaac |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34015534 |
aaaactcaccataacatgaaacctgaagaaagggaaagcttgacaacaggccaaagatcttggaaagctaaaaatgagaaacctttccaagtatcagaac |
34015435 |
T |
|
| Q |
407 |
accaaccacatgtaataaatataagttgaccaatatttggaaaccataaggccaaacttattgaaatcattgcaccaacaatcccaagcttgattttcat |
506 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
34015434 |
accaaccacatgtaataaatataagttgaccaatatttggaatccataaggccaaacttattgaaatcattgcaccagcaatcccaagcttgattttcat |
34015335 |
T |
|
| Q |
507 |
tgttaaaagccaagagagtaatacatgaacagaaattgagaaagctgccaagtatgcaataatgttattcctgctttgtgactgaaggaatgtttgggta |
606 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34015334 |
tgttaagagccaagagagtaatacatgaacagaaattgagaaagctgccaagtatgcaataatgttattcctgctttgtgactgaaggaatgtttgggta |
34015235 |
T |
|
| Q |
607 |
gtgaatgaggcaataaaagcaaacaaaattggaattgataaataaccaatggttcctgctacttgtgatatggtttc |
683 |
Q |
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| T |
34015234 |
gtgaatgaggcaataaaagcaaacaaaattggaattgataaataaccaatggttcctgctacttgtgatatggtttc |
34015158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 128; E-Value: 8e-66
Query Start/End: Original strand, 334 - 644
Target Start/End: Complemental strand, 34005652 - 34005342
Alignment:
| Q |
334 |
gaaagggaaagcttgacaacaggccaaagatcttggaaagctaaaaatgagaaacctttccaagtatcagaacaccaaccacatgtaataaatataagtt |
433 |
Q |
| |
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||||||||||| ||||||||||||||||| |||| ||| ||||||||||||||||| |||||||| |||| |||||||||||| |||| |||||| |||| |
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| T |
34005652 |
gaaagggaaagtttgacaacaggccaaaggtctttgaatgctaaaaatgagaaaccattccaagtttcaggacaccaaccacaagtaacaaatatgagtt |
34005553 |
T |
|
| Q |
434 |
gaccaatatttggaaaccataaggccaaacttattgaaatcattgcaccaacaatcccaagcttgat-tttcattgttaaaagccaagagagtaatacat |
532 |
Q |
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||||||| || |||| ||| | |||||| | ||||||||||||||||| ||||||||| ||||| ||||||||| |||||||||||||| ||| ||| |
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| T |
34005552 |
gaccaatgttgggaatccaatatgccaaaatagttgaaatcattgcaccagcaatcccaa-attgatatttcattgtcaaaagccaagagaggaatgcat |
34005454 |
T |
|
| Q |
533 |
gaacagaaattgagaaagctgccaagtatgcaataatgttattcctgctttgtgactgaaggaatgtttgggtagtgaatgaggcaataaaagcaaacaa |
632 |
Q |
| |
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||| || || |||||||||||| ||||||| ||| | ||| |||||||||| ||||||||||||||| |||||||||| ||||||||||||||| |
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| T |
34005453 |
gaatgattatggaaaaagctgccaagaatgcaatgatggtgttcttgctttgtgattgaaggaatgtttggcaagtgaatgagacaataaaagcaaacat |
34005354 |
T |
|
| Q |
633 |
aattggaattga |
644 |
Q |
| |
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||| |||||||| |
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|
| T |
34005353 |
aataggaattga |
34005342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 340 - 403
Target Start/End: Complemental strand, 33984058 - 33983995
Alignment:
| Q |
340 |
gaaagcttgacaacaggccaaagatcttggaaagctaaaaatgagaaacctttccaagtatcag |
403 |
Q |
| |
|
|||||||||| ||||||||||||||||| ||| || |||||||||||||| ||||| ||||||| |
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| T |
33984058 |
gaaagcttgataacaggccaaagatctttgaaggccaaaaatgagaaacccttccatgtatcag |
33983995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 340 - 403
Target Start/End: Complemental strand, 33993731 - 33993668
Alignment:
| Q |
340 |
gaaagcttgacaacaggccaaagatcttggaaagctaaaaatgagaaacctttccaagtatcag |
403 |
Q |
| |
|
|||||||||| ||||||||||||||||| ||| || |||||||| ||||| ||||| ||||||| |
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| T |
33993731 |
gaaagcttgataacaggccaaagatctttgaaggccaaaaatgaaaaacccttccatgtatcag |
33993668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 343 - 403
Target Start/End: Original strand, 9237415 - 9237475
Alignment:
| Q |
343 |
agcttgacaacaggccaaagatcttggaaagctaaaaatgagaaacctttccaagtatcag |
403 |
Q |
| |
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||||| ||||||||||||||||||| |||||| || | ||||||||| ||||||||||||| |
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| T |
9237415 |
agctttacaacaggccaaagatctttgaaagccaatattgagaaacccttccaagtatcag |
9237475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 344 - 403
Target Start/End: Original strand, 9217908 - 9217967
Alignment:
| Q |
344 |
gcttgacaacaggccaaagatcttggaaagctaaaaatgagaaacctttccaagtatcag |
403 |
Q |
| |
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|||| ||||| ||||||||||||| |||||| |||| ||||||||| |||||||| |||| |
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| T |
9217908 |
gcttcacaactggccaaagatctttgaaagccaaaattgagaaacccttccaagtttcag |
9217967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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