View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18982_low_53 (Length: 321)
Name: NF18982_low_53
Description: NF18982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18982_low_53 |
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Alignment Details
Target: chr8 (Bit Score: 226; Significance: 1e-124; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 46 - 312
Target Start/End: Complemental strand, 12041753 - 12041483
Alignment:
| Q |
46 |
ccaattggatgattcaatattttgtaacata----aacaacttgatttattcttgagacatttcaatctttctctctgttaaattgtagtttaaagaatg |
141 |
Q |
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| T |
12041753 |
ccaattggatgattcaatattttgtaacatatataaacaacttgatttattcttgagatatttcaatctttttctctgttaaattgtagtttaaagaatg |
12041654 |
T |
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| Q |
142 |
agatgtctagaatttgatgcatttgtcaatcatgccacatgataaaagcttgtgcgaattttccctgttttaaatgttttccaagagattgcatttaatt |
241 |
Q |
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| T |
12041653 |
agatgtctagaatttgatgcatttgtcaatcatgccacatgataaaagcttgtgcgaatttccccagttttaaatgttttccaagagattgaatttaatt |
12041554 |
T |
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| Q |
242 |
tataggtatgcgttgtgggttttgaagtgagtaaagtaatttagaataattacagatttatttacaaatct |
312 |
Q |
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| T |
12041553 |
tataggtatgcgttgtgggatttgaagtaagtaaagtaatttagaataattacagatttatttacaaatct |
12041483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 8 - 318
Target Start/End: Complemental strand, 12060035 - 12059728
Alignment:
| Q |
8 |
aataagtaaacgatcttagtacaatttaannnnnnnnnccaattggatgattcaatattttgtaacataaacaacttgatttattcttgagacatttcaa |
107 |
Q |
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| T |
12060035 |
aataagtacgcgatcttagtacaatttaattttgttttccaattggatgattcaatatatcataacataaacaacttgatttattgttgagatattacaa |
12059936 |
T |
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| Q |
108 |
tctttctctctgttaaattgtagtttaaagaatgagatgtctagaatttgatgcatttgtcaatcatgccacatgataaaagcttgtgcgaattttccct |
207 |
Q |
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| T |
12059935 |
tctttttgtttgttaaattgtggtttaaagaatgagatgtcaagaaattgatgcatttgtcaatcatgccacaagataaaagcttgtgcggatttcccct |
12059836 |
T |
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| Q |
208 |
gttttaaatgttttccaagagattgcatttaatttataggta-tgcgttgtgggttttgaagtgagtaaagtaattta-gaataattacagatttattta |
305 |
Q |
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| T |
12059835 |
gttttaaa-gcttttcaagagattgcatttaatttata--tagggcgt--tgagttttgaaattaataaagtaataaaggaataattacatatttattta |
12059741 |
T |
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| Q |
306 |
caaatctgagaat |
318 |
Q |
| |
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| T |
12059740 |
ctaatctgagaat |
12059728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 46 - 192
Target Start/End: Original strand, 15978064 - 15978212
Alignment:
| Q |
46 |
ccaattggatgattcaatattttgtaacataaacaacttgatttattcttgagacatttcaatct--ttctctctgttaaattgtagtttaaagaatgag |
143 |
Q |
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| T |
15978064 |
ccaatgggatgattcaatgtattgtaacataaatggcttgatttattcttgagagattgcaatctctttctttgtgttaaatggacgtttaaagaatgag |
15978163 |
T |
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| Q |
144 |
atgtctagaatttgatgcatttgtcaatcatgccacatgataaaagctt |
192 |
Q |
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| T |
15978164 |
atgtctagaaattgatgcatttgtcaatcatgcaacaagataaaagctt |
15978212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 46 - 200
Target Start/End: Original strand, 19144674 - 19144830
Alignment:
| Q |
46 |
ccaattggatgattcaatattttgtaacataaacaacttgatttattcttgagacatttcaatct--ttctctctgttaaattgtagtttaaagaatgag |
143 |
Q |
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||||| |||||||||||||| | ||||||||||| |||||||||||||||||| ||| | |||| |||| | |||||||| | |||||||||||| | |
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| T |
19144674 |
ccaatgggatgattcaatatatcgtaacataaacgtcttgatttattcttgagatattgctatctctttctttgtgttaaatggacgtttaaagaatgtg |
19144773 |
T |
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| Q |
144 |
atgtctagaatttgatgcatttgtcaatcatgccacatgataaaagcttgtgcgaat |
200 |
Q |
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| T |
19144774 |
atatctagaaattgatgcatttgtccatcatgcaacaagataaaagattgtgtgaat |
19144830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 46 - 195
Target Start/End: Original strand, 19123654 - 19123805
Alignment:
| Q |
46 |
ccaattggatgattcaatattttgtaacataaacaacttgatttattcttgagacatttcaatc--tttctctctgttaaattgtagtttaaagaatgag |
143 |
Q |
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| T |
19123654 |
ccaatgggatgattcaatatatcgtaacataaacgtcttgatttattctagagatattgctatcactttctttgtgttaaatggacgtttaaagaatgtg |
19123753 |
T |
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| Q |
144 |
atgtctagaatttgatgcatttgtcaatcatgccacatgataaaagcttgtg |
195 |
Q |
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| T |
19123754 |
atgtctagaaattgatgcatttctcaatcatgcaacaagataaaagattgtg |
19123805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 55 - 176
Target Start/End: Original strand, 19109693 - 19109816
Alignment:
| Q |
55 |
tgattcaatattttgtaacataaacaacttgatttattcttgagacatttcaatct--ttctctctgttaaattgtagtttaaagaatgagatgtctaga |
152 |
Q |
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||||||||||| | ||||||||||| ||||| |||||||||||| ||| ||||| |||| | |||||||| | ||||||||||||||||||||| | |
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| T |
19109693 |
tgattcaatatatcgtaacataaacggcttgaattattcttgagatattgaaatctctttctttgtgttaaatggacgtttaaagaatgagatgtctata |
19109792 |
T |
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| Q |
153 |
atttgatgcatttgtcaatcatgc |
176 |
Q |
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| T |
19109793 |
aattaatgcatttgtcaatcatgc |
19109816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 46 - 202
Target Start/End: Complemental strand, 12031934 - 12031784
Alignment:
| Q |
46 |
ccaattggatgattcaatattttgtaacataaacaacttgatttattcttgagacatttcaatctttctctctgttaaattgtagtttaaagaatgagat |
145 |
Q |
| |
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| T |
12031934 |
ccaatgggatgattcaatatatggtaacataaacgggttgatttattctagagatattacaatctctttctttctt----tgtg--ttaaagaatgagat |
12031841 |
T |
|
| Q |
146 |
gtctagaatttgatgcatttgtcaatcatgccacatgataaaagcttgtgcgaattt |
202 |
Q |
| |
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||||| || ||||||| ||||||||| |||| ||| |||||||||||||| |||||| |
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| T |
12031840 |
gtctaaaaattgatgcctttgtcaattatgcaacaagataaaagcttgtgtgaattt |
12031784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 144
Target Start/End: Complemental strand, 10015920 - 10015851
Alignment:
| Q |
76 |
aaacaacttgatttattcttgagacatttcaatctttctctctgt-taaattgtagtttaaagaatgaga |
144 |
Q |
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| T |
10015920 |
aaacaccttgatttattcttgagatattgcaatatttttttgtgtgtaaatggtagtttaaagaatgaga |
10015851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 107
Target Start/End: Original strand, 8719103 - 8719143
Alignment:
| Q |
67 |
ttgtaacataaacaacttgatttattcttgagacatttcaa |
107 |
Q |
| |
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||||||||||||| ||| ||||||||||||||| ||||||| |
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|
| T |
8719103 |
ttgtaacataaacgactagatttattcttgagatatttcaa |
8719143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 72 - 144
Target Start/End: Complemental strand, 20422627 - 20422556
Alignment:
| Q |
72 |
acataaacaacttgatttattcttgagacatttcaatctttctctctgttaaattgtagtttaaagaatgaga |
144 |
Q |
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||||||||| |||||||||||| ||||| ||| |||| ||| | | || ||||| |||||||||||||||||| |
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| T |
20422627 |
acataaacaccttgatttattcatgagatattgcaatatttttttgtg-taaatggtagtttaaagaatgaga |
20422556 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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