View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18982_low_55 (Length: 314)
Name: NF18982_low_55
Description: NF18982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18982_low_55 |
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Alignment Details
Target: chr2 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 7 - 281
Target Start/End: Complemental strand, 1723887 - 1723615
Alignment:
| Q |
7 |
atactcatgcattatgataataagatggagggagtaattaatagacagacaaagggtatagagatccttcctgcccatggttaaatgggcaggtccccca |
106 |
Q |
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| T |
1723887 |
atacttatgcattatgataataagatggagggagtaactaatagacagacaaagggtatagagatccttcctgcccatggttaaatgggcaggtccccca |
1723788 |
T |
|
| Q |
107 |
ccatgagtctcaatggaatcatgagaaaattaactaaaaaataaaataagagtagaatgaggcctttgtctaatgtgcacaagtaaattagtcttggcac |
206 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
1723787 |
ccatgagtctcaatggaatcatgagaaaattaacta-aaaataaaataagagtagaatgaggcctttgtctaatgtgcacaagtaaattagtctt-gcac |
1723690 |
T |
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| Q |
207 |
catgaggaagtttgttttccaccgctggatcaataaatcctatcgcatctcatttggtccaagggtgagacttat |
281 |
Q |
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| T |
1723689 |
catgaggaagtttgttttccaccgctggatcaataaatcccatcgcatctcatttggtccaagggtgagacttat |
1723615 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 170 - 224
Target Start/End: Complemental strand, 18897752 - 18897699
Alignment:
| Q |
170 |
ctttgtctaatgtgcacaagtaaattagtcttggcaccatgaggaagtttgtttt |
224 |
Q |
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| T |
18897752 |
ctttgtctaatgtgcacgagtaaataagtctt-gcaccatgagcaagtttgtttt |
18897699 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 170 - 225
Target Start/End: Original strand, 4210116 - 4210170
Alignment:
| Q |
170 |
ctttgtctaatgtgcacaagtaaattagtcttggcaccatgaggaagtttgttttc |
225 |
Q |
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| T |
4210116 |
ctttgtctaatgtgcacaagtaaattagtc-tcgcaccatgcagaagtttgttttc |
4210170 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 202
Target Start/End: Complemental strand, 41211640 - 41211611
Alignment:
| Q |
173 |
tgtctaatgtgcacaagtaaattagtcttg |
202 |
Q |
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| T |
41211640 |
tgtctaatgtgcacaagtaaattagtcttg |
41211611 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 170 - 245
Target Start/End: Original strand, 21001328 - 21001402
Alignment:
| Q |
170 |
ctttgtctaatgtgcacaagtaaattagtcttggcaccatgaggaagtttgttttccaccgctggatcaataaatc |
245 |
Q |
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| T |
21001328 |
ctttgtctaatgtgcgcaagcaaattagtatt-gcaccatgcacaagcttgttttccaccgttggatcattaaatc |
21001402 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 170 - 293
Target Start/End: Complemental strand, 52416532 - 52416410
Alignment:
| Q |
170 |
ctttgtctaatgtgcacaagtaaattagtcttggcaccatgaggaagtttgttttccaccgctggatcaataaatcctatcgcatctcatttggtccaag |
269 |
Q |
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||||||||||||||||||| ||||| |||| | |||||||| |||||||||||| |||| || ||||| || || ||| ||| || ||| |||||| |
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| T |
52416532 |
ctttgtctaatgtgcacaaataaataagtc-tagcaccatgcacaagtttgttttctaccgttgaatcaacaagtcacatcaaatcacaattgatccaag |
52416434 |
T |
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| Q |
270 |
ggtgagacttattgatccagtggt |
293 |
Q |
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||| |||||||||||||| |||| |
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| T |
52416433 |
ggtacgacttattgatccaatggt |
52416410 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 202
Target Start/End: Original strand, 38676406 - 38676434
Alignment:
| Q |
174 |
gtctaatgtgcacaagtaaattagtcttg |
202 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
38676406 |
gtctaatgtgcacaagtaaattagtcttg |
38676434 |
T |
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