View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18982_low_56 (Length: 312)

Name: NF18982_low_56
Description: NF18982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18982_low_56
NF18982_low_56
[»] chr1 (1 HSPs)
chr1 (18-306)||(27009056-27009344)


Alignment Details
Target: chr1 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 18 - 306
Target Start/End: Complemental strand, 27009344 - 27009056
Alignment:
Q  18 atttcttcttctccttctttgatcatcaaagtttgttccttaatcaaatgagattgagcctttgatttctttagtagcttctgaactttcttatgaagca 117  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  27009344 atttcttcttctccttctttgatcatcaaagtttgctccttaatcaaatgagattgagcctttgatttcttaagtagcttctgaactttcttatgaagca 27009245  T
Q  118 acctattctctgatttccaatattcaagcttttcaataatcttaaggtattggattacaaaattctctaacctcatagtttctttttctatgaatgaaat 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27009244 acctattctctgatttccaatattcaagcttttcaataatcttaaggtattggattacaaaattctctaacctcatagtttctttttctatgaatgaaat 27009145  T
Q  218 ctctctatcgaagaactcgacgcgagatgtttcgagtgacaacatgtttttcatttctctaagcatagattctttttctttcatctcac 306  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||    
T  27009144 ctctctatcgaagaactcgacgcgagatgtttcgagtgataacatgtttttcatttctctaagcatagattctttttctttcatttcac 27009056  T

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