View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18982_low_63 (Length: 294)
Name: NF18982_low_63
Description: NF18982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18982_low_63 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 18 - 294
Target Start/End: Complemental strand, 33357438 - 33357162
Alignment:
| Q |
18 |
gatatcaaacctcccaccgatttaattaaatgaaatgctacctatgcttactcatctccttcttttctttgttattaaatagtccagcctctagctttca |
117 |
Q |
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| T |
33357438 |
gatatcaaacctcccaccgatttaattaaatgaaatgctacctatgcttactcatctccttcttttctttgttattaaatagtccagcctctagctttca |
33357339 |
T |
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| Q |
118 |
cttccccaaccttctcaaaaggtgctatgataatcacatttaaatgatatgatacatcaaacattcaacaccaaaaatgtcatatgtttgaaataggaga |
217 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33357338 |
cttccccaaccttctcaacaggtgctatgataatcacatttaaatgatatgatacatcaaacattcaacaccaaaaatgtcatatgtttgaaataggaga |
33357239 |
T |
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| Q |
218 |
ataaaaattgcccctataatatacagaagtgatagtgacggatgttatgtaagtgcaagaaatattatcctttctca |
294 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33357238 |
ataaaaattgcccctataatatacagaagtgatagtgacggatgttatgtaagtgcaagaaatattatcctttctca |
33357162 |
T |
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