View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18982_low_67 (Length: 289)
Name: NF18982_low_67
Description: NF18982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18982_low_67 |
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Alignment Details
Target: chr5 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 283
Target Start/End: Complemental strand, 6627080 - 6626794
Alignment:
| Q |
1 |
gttaggttaagttaattagacaatggactttcannnnnnnna----aaattattaatgtcatcaaactcatattagttatcaatgattatgttagaacta |
96 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6627080 |
gttaggttaagttaattagacaatggactttcatttttttttttttaaattattaatgtcatcaaactcatattagttatcaatgattatgttagaacta |
6626981 |
T |
|
| Q |
97 |
ctccaatgaagggtattaaattgttgtggcccagtacgcccgcccaagttggggcgcactaggccaccgcgacgtagatgcctttcaaatacagagttct |
196 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6626980 |
ctccaatgaagggtattaaattgttgtggcccagtacgcccgcccaagttggggcgcactaggccaccgcgacgtagatgcctttcaaatacagagttct |
6626881 |
T |
|
| Q |
197 |
taagagttgtaccattgaagtaaatgagagtgagttgctcaaaaaagatatgtaaaaatagtccttttgattaatgaggatattctt |
283 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
6626880 |
taagagttgtaccattgaagtaaatgagagtgagttgctcaaaaaagatatgtaaaaatagtccttttgattaatgaggattttctt |
6626794 |
T |
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