View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18982_low_68 (Length: 287)

Name: NF18982_low_68
Description: NF18982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18982_low_68
NF18982_low_68
[»] chr1 (30 HSPs)
chr1 (56-175)||(33508637-33508756)
chr1 (205-252)||(49453615-49453662)
chr1 (214-252)||(51571564-51571602)
chr1 (203-252)||(22389410-22389458)
chr1 (207-252)||(40595942-40595987)
chr1 (205-252)||(2571632-2571679)
chr1 (205-252)||(8350223-8350270)
chr1 (214-249)||(28716284-28716319)
chr1 (206-241)||(48872528-48872563)
chr1 (214-252)||(2362507-2362545)
chr1 (214-252)||(3159382-3159420)
chr1 (208-246)||(7503610-7503648)
chr1 (214-252)||(11460932-11460970)
chr1 (206-252)||(30687190-30687236)
chr1 (214-252)||(30735320-30735358)
chr1 (214-252)||(31290103-31290141)
chr1 (218-252)||(36418217-36418251)
chr1 (214-252)||(37685337-37685375)
chr1 (214-252)||(37700143-37700181)
chr1 (214-252)||(40610367-40610405)
chr1 (204-246)||(48872836-48872878)
chr1 (207-245)||(52020312-52020350)
chr1 (207-240)||(25061883-25061916)
chr1 (204-241)||(27352779-27352816)
chr1 (207-252)||(44730782-44730827)
chr1 (214-243)||(44959080-44959109)
chr1 (214-246)||(4638069-4638101)
chr1 (204-252)||(36930641-36930689)
chr1 (214-246)||(45272052-45272084)
chr1 (214-246)||(49425880-49425912)
[»] chr4 (32 HSPs)
chr4 (207-252)||(51389454-51389499)
chr4 (214-252)||(5234366-5234404)
chr4 (214-252)||(31275284-31275322)
chr4 (204-252)||(42915104-42915152)
chr4 (214-252)||(36408099-36408137)
chr4 (214-252)||(36413222-36413260)
chr4 (214-252)||(46173675-46173713)
chr4 (215-252)||(31658057-31658094)
chr4 (204-249)||(47998734-47998779)
chr4 (208-252)||(7795138-7795182)
chr4 (214-252)||(2613511-2613550)
chr4 (214-252)||(1033286-1033324)
chr4 (214-252)||(3286956-3286994)
chr4 (205-243)||(3624348-3624386)
chr4 (214-252)||(5622464-5622502)
chr4 (214-252)||(15596534-15596572)
chr4 (214-252)||(23369359-23369397)
chr4 (214-252)||(37297055-37297093)
chr4 (214-252)||(37997262-37997300)
chr4 (203-252)||(25476759-25476808)
chr4 (205-246)||(36792477-36792518)
chr4 (207-252)||(37977253-37977298)
chr4 (204-249)||(43174980-43175025)
chr4 (206-243)||(55511006-55511043)
chr4 (214-246)||(22257091-22257123)
chr4 (214-246)||(31240793-31240825)
chr4 (204-252)||(38134349-38134397)
chr4 (202-246)||(39241185-39241229)
chr4 (208-252)||(40847505-40847549)
chr4 (202-234)||(42510807-42510839)
chr4 (205-241)||(46567078-46567114)
chr4 (212-252)||(53583021-53583061)
[»] chr7 (22 HSPs)
chr7 (204-252)||(8792485-8792533)
chr7 (214-252)||(12142022-12142060)
chr7 (214-252)||(10591290-10591328)
chr7 (206-252)||(32428206-32428252)
chr7 (205-252)||(43445545-43445592)
chr7 (214-252)||(5978717-5978755)
chr7 (214-252)||(6353867-6353905)
chr7 (214-252)||(30941392-30941430)
chr7 (214-252)||(32933685-32933723)
chr7 (214-252)||(37351885-37351923)
chr7 (206-244)||(41732668-41732706)
chr7 (214-252)||(44895599-44895637)
chr7 (204-241)||(2469841-2469878)
chr7 (205-246)||(7807199-7807240)
chr7 (214-246)||(19426724-19426756)
chr7 (204-252)||(25192911-25192959)
chr7 (214-246)||(28597024-28597056)
chr7 (214-246)||(32154445-32154477)
chr7 (214-246)||(40842551-40842583)
chr7 (204-252)||(46651810-46651858)
chr7 (214-246)||(47424880-47424912)
chr7 (204-252)||(48866815-48866863)
[»] chr5 (26 HSPs)
chr5 (214-252)||(39595412-39595450)
chr5 (204-252)||(2117525-2117573)
chr5 (204-252)||(9403651-9403699)
chr5 (205-252)||(33567125-33567172)
chr5 (214-252)||(125230-125268)
chr5 (205-241)||(91364-91400)
chr5 (204-244)||(26626704-26626744)
chr5 (208-252)||(31284283-31284327)
chr5 (214-249)||(12349926-12349961)
chr5 (214-252)||(9714030-9714068)
chr5 (214-252)||(11306834-11306872)
chr5 (214-252)||(19522030-19522068)
chr5 (214-252)||(20719910-20719948)
chr5 (214-252)||(24431513-24431551)
chr5 (214-252)||(28306159-28306197)
chr5 (214-252)||(34381150-34381188)
chr5 (207-252)||(15639523-15639568)
chr5 (204-241)||(24792601-24792638)
chr5 (207-252)||(38387848-38387893)
chr5 (215-252)||(43482503-43482540)
chr5 (214-246)||(3141640-3141672)
chr5 (208-252)||(7144713-7144757)
chr5 (204-252)||(19127262-19127310)
chr5 (205-241)||(20040923-20040959)
chr5 (216-252)||(26791271-26791307)
chr5 (204-252)||(33243626-33243674)
[»] chr3 (25 HSPs)
chr3 (214-252)||(7231901-7231939)
chr3 (216-252)||(11173588-11173624)
chr3 (203-241)||(25959426-25959464)
chr3 (214-252)||(29706041-29706079)
chr3 (214-252)||(46473266-46473304)
chr3 (204-252)||(51973394-51973442)
chr3 (214-249)||(44695153-44695188)
chr3 (214-252)||(9028011-9028049)
chr3 (214-252)||(20380784-20380822)
chr3 (214-252)||(26014818-26014856)
chr3 (214-252)||(28300541-28300579)
chr3 (206-252)||(32981008-32981054)
chr3 (214-252)||(42357107-42357145)
chr3 (214-252)||(46623913-46623951)
chr3 (214-252)||(46953087-46953125)
chr3 (214-252)||(47472335-47472373)
chr3 (214-252)||(52939659-52939697)
chr3 (205-246)||(31997947-31997988)
chr3 (214-246)||(6126599-6126631)
chr3 (214-246)||(31249216-31249248)
chr3 (214-246)||(32687854-32687886)
chr3 (214-246)||(43169649-43169681)
chr3 (214-246)||(46003851-46003883)
chr3 (214-246)||(51464161-51464193)
chr3 (214-246)||(51650501-51650533)
[»] chr6 (12 HSPs)
chr6 (214-249)||(2241721-2241756)
chr6 (205-252)||(32253919-32253966)
chr6 (214-252)||(8098622-8098660)
chr6 (204-246)||(9954693-9954735)
chr6 (214-252)||(22079590-22079628)
chr6 (214-252)||(25811865-25811903)
chr6 (214-252)||(30733147-30733185)
chr6 (214-252)||(32853039-32853077)
chr6 (214-252)||(34047393-34047431)
chr6 (204-245)||(10628425-10628466)
chr6 (204-252)||(16336955-16337003)
chr6 (208-252)||(25567382-25567426)
[»] chr2 (12 HSPs)
chr2 (205-252)||(2464275-2464322)
chr2 (214-252)||(11164271-11164309)
chr2 (204-252)||(19637365-19637413)
chr2 (204-252)||(19835958-19836006)
chr2 (205-252)||(3091879-3091926)
chr2 (198-241)||(19668066-19668109)
chr2 (205-252)||(36133112-36133159)
chr2 (214-252)||(12600186-12600224)
chr2 (214-252)||(18254236-18254274)
chr2 (214-246)||(34138931-34138963)
chr2 (204-252)||(43650432-43650480)
chr2 (214-246)||(45515494-45515526)
[»] scaffold0018 (1 HSPs)
scaffold0018 (214-245)||(36147-36178)
[»] chr8 (22 HSPs)
chr8 (214-252)||(20284845-20284884)
chr8 (214-252)||(21071474-21071513)
chr8 (205-252)||(23258170-23258217)
chr8 (214-245)||(40413258-40413289)
chr8 (214-252)||(7678870-7678908)
chr8 (214-252)||(13971131-13971169)
chr8 (214-252)||(21273605-21273643)
chr8 (214-252)||(22719446-22719484)
chr8 (214-252)||(27325764-27325802)
chr8 (214-252)||(28927819-28927857)
chr8 (214-252)||(31249551-31249589)
chr8 (204-246)||(34474095-34474137)
chr8 (202-252)||(42443244-42443294)
chr8 (203-252)||(5502500-5502549)
chr8 (214-251)||(9046966-9047003)
chr8 (203-252)||(12045537-12045586)
chr8 (205-246)||(32175100-32175141)
chr8 (214-251)||(44672128-44672165)
chr8 (214-246)||(9963830-9963862)
chr8 (214-246)||(30925549-30925581)
chr8 (208-240)||(36740462-36740494)
chr8 (214-246)||(45101540-45101572)
[»] scaffold0115 (1 HSPs)
scaffold0115 (214-252)||(15084-15122)
[»] scaffold0036 (1 HSPs)
scaffold0036 (214-252)||(18141-18179)
[»] scaffold0166 (1 HSPs)
scaffold0166 (204-241)||(34984-35021)
[»] scaffold0501 (1 HSPs)
scaffold0501 (208-252)||(10405-10449)
[»] scaffold0184 (1 HSPs)
scaffold0184 (208-252)||(16483-16527)
[»] scaffold0078 (1 HSPs)
scaffold0078 (208-252)||(56317-56361)
[»] scaffold0060 (1 HSPs)
scaffold0060 (214-246)||(6961-6993)


Alignment Details
Target: chr1 (Bit Score: 104; Significance: 7e-52; HSPs: 30)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 56 - 175
Target Start/End: Original strand, 33508637 - 33508756
Alignment:
Q  56 ttattttacctaaaaatctaacatgtattctcatgaacaattcgtcttagagaaaactcatcaatcctttgaaccctaactacactcttgaattttttcc 155  Q
    ||||||||||||||||||||||||||||||||| |||||||||||| ||||| ||||||||||||||||||||||||| |||||||||||||||||||||    
T  33508637 ttattttacctaaaaatctaacatgtattctcacgaacaattcgtcctagagcaaactcatcaatcctttgaaccctacctacactcttgaattttttcc 33508736  T
Q  156 acgattaaattaaagtgaga 175  Q
    ||||||||||||||||||||    
T  33508737 acgattaaattaaagtgaga 33508756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 205 - 252
Target Start/End: Complemental strand, 49453662 - 49453615
Alignment:
Q  205 aaagagcactgatatttgaacaaccatttgatacaacttttgtgacaa 252  Q
    |||||| | ||||||||||||||| |||||||||||||||||||||||    
T  49453662 aaagagtagtgatatttgaacaactatttgatacaacttttgtgacaa 49453615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 214 - 252
Target Start/End: Complemental strand, 51571602 - 51571564
Alignment:
Q  214 tgatatttgaacaaccatttgatacaacttttgtgacaa 252  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  51571602 tgatatttgaacaaccatttaatacaacttttgtgacaa 51571564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 203 - 252
Target Start/End: Original strand, 22389410 - 22389458
Alignment:
Q  203 caaaagagcactgatatttgaacaaccatttgatacaacttttgtgacaa 252  Q
    |||||||| | ||||||||||||||||||||||| |||||||||||||||    
T  22389410 caaaagagtaatgatatttgaacaaccatttgat-caacttttgtgacaa 22389458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 207 - 252
Target Start/End: Original strand, 40595942 - 40595987
Alignment:
Q  207 agagcactgatatttgaacaaccatttgatacaacttttgtgacaa 252  Q
    |||||| |||||||||||||||||||||||||||| ||| ||||||    
T  40595942 agagcaatgatatttgaacaaccatttgatacaacctttttgacaa 40595987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 205 - 252
Target Start/End: Original strand, 2571632 - 2571679
Alignment:
Q  205 aaagagcactgatatttgaacaaccatttgatacaacttttgtgacaa 252  Q
    |||||| | ||||||||||||||||||||  |||||||||||||||||    
T  2571632 aaagagaaatgatatttgaacaaccattttttacaacttttgtgacaa 2571679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 205 - 252
Target Start/End: Complemental strand, 8350270 - 8350223
Alignment:
Q  205 aaagagcactgatatttgaacaaccatttgatacaacttttgtgacaa 252  Q
    |||||| | ||||||||||||||||||||  |||||||||||||||||    
T  8350270 aaagagaaatgatatttgaacaaccattttttacaacttttgtgacaa 8350223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 214 - 249
Target Start/End: Complemental strand, 28716319 - 28716284
Alignment:
Q  214 tgatatttgaacaaccatttgatacaacttttgtga 249  Q
    |||||||||||||||||||||| |||||||||||||    
T  28716319 tgatatttgaacaaccatttgagacaacttttgtga 28716284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 206 - 241
Target Start/End: Complemental strand, 48872563 - 48872528
Alignment:
Q  206 aagagcactgatatttgaacaaccatttgatacaac 241  Q
    ||||||| ||||||||||||||||||||||||||||    
T  48872563 aagagcaatgatatttgaacaaccatttgatacaac 48872528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 252
Target Start/End: Complemental strand, 2362545 - 2362507
Alignment:
Q  214 tgatatttgaacaaccatttgatacaacttttgtgacaa 252  Q
    ||||||||||||||| ||||||||||| |||||||||||    
T  2362545 tgatatttgaacaactatttgatacaatttttgtgacaa 2362507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 252
Target Start/End: Original strand, 3159382 - 3159420
Alignment:
Q  214 tgatatttgaacaaccatttgatacaacttttgtgacaa 252  Q
    ||||||||||||||||||||  |||||||||||||||||    
T  3159382 tgatatttgaacaaccattttttacaacttttgtgacaa 3159420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 208 - 246
Target Start/End: Complemental strand, 7503648 - 7503610
Alignment:
Q  208 gagcactgatatttgaacaaccatttgatacaacttttg 246  Q
    ||||| |||||||||||||||||||| ||||||||||||    
T  7503648 gagcagtgatatttgaacaaccatttcatacaacttttg 7503610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 252
Target Start/End: Complemental strand, 11460970 - 11460932
Alignment:
Q  214 tgatatttgaacaaccatttgatacaacttttgtgacaa 252  Q
    ||||||||||||||| |||||||||||||||| ||||||    
T  11460970 tgatatttgaacaacaatttgatacaacttttttgacaa 11460932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 252
Target Start/End: Complemental strand, 30687236 - 30687190
Alignment:
Q  206 aagagcactgatatttgaacaaccatttgatacaacttttgtgacaa 252  Q
    ||||||| ||||||||||||||||||||| ||||| |||| ||||||    
T  30687236 aagagcaatgatatttgaacaaccatttggtacaaattttttgacaa 30687190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 252
Target Start/End: Complemental strand, 30735358 - 30735320
Alignment:
Q  214 tgatatttgaacaaccatttgatacaacttttgtgacaa 252  Q
    ||||||||||||||||||||  |||||||||||||||||    
T  30735358 tgatatttgaacaaccattttttacaacttttgtgacaa 30735320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 252
Target Start/End: Original strand, 31290103 - 31290141
Alignment:
Q  214 tgatatttgaacaaccatttgatacaacttttgtgacaa 252  Q
    |||||||||||||||||||| | ||||||||||||||||    
T  31290103 tgatatttgaacaaccatttcacacaacttttgtgacaa 31290141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 218 - 252
Target Start/End: Complemental strand, 36418251 - 36418217
Alignment:
Q  218 atttgaacaaccatttgatacaacttttgtgacaa 252  Q
    ||||||||||| |||||||||||||||||||||||    
T  36418251 atttgaacaactatttgatacaacttttgtgacaa 36418217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 252
Target Start/End: Original strand, 37685337 - 37685375
Alignment:
Q  214 tgatatttgaacaaccatttgatacaacttttgtgacaa 252  Q
    ||||||||||||||||||||  |||||||||||||||||    
T  37685337 tgatatttgaacaaccattttttacaacttttgtgacaa 37685375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 252
Target Start/End: Complemental strand, 37700181 - 37700143
Alignment:
Q  214 tgatatttgaacaaccatttgatacaacttttgtgacaa 252  Q
    ||||||||||||||||||||  |||||||||||||||||    
T  37700181 tgatatttgaacaaccattttttacaacttttgtgacaa 37700143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 252
Target Start/End: Complemental strand, 40610405 - 40610367
Alignment:
Q  214 tgatatttgaacaaccatttgatacaacttttgtgacaa 252  Q
    ||||||||||||| |||||||| ||||||||||||||||    
T  40610405 tgatatttgaacatccatttgagacaacttttgtgacaa 40610367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 246
Target Start/End: Original strand, 48872836 - 48872878
Alignment:
Q  204 aaaagagcactgatatttgaacaaccatttgatacaacttttg 246  Q
    ||||||| | |||||||||||||||||||| ||||||||||||    
T  48872836 aaaagagtagtgatatttgaacaaccatttcatacaacttttg 48872878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 245
Target Start/End: Original strand, 52020312 - 52020350
Alignment:
Q  207 agagcactgatatttgaacaaccatttgatacaactttt 245  Q
    |||||| |||||||||||||||||||| |||||||||||    
T  52020312 agagcagtgatatttgaacaaccatttcatacaactttt 52020350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 240
Target Start/End: Complemental strand, 25061916 - 25061883
Alignment:
Q  207 agagcactgatatttgaacaaccatttgatacaa 240  Q
    |||||| |||||||||||||||||||||||||||    
T  25061916 agagcaatgatatttgaacaaccatttgatacaa 25061883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 241
Target Start/End: Complemental strand, 27352816 - 27352779
Alignment:
Q  204 aaaagagcactgatatttgaacaaccatttgatacaac 241  Q
    ||||||||| ||||||||||||||||||||| ||||||    
T  27352816 aaaagagcaatgatatttgaacaaccatttggtacaac 27352779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 252
Target Start/End: Complemental strand, 44730827 - 44730782
Alignment:
Q  207 agagcactgatatttgaacaaccatttgatacaacttttgtgacaa 252  Q
    |||||| ||||||||||||||||||||| |||||| ||| ||||||    
T  44730827 agagcaatgatatttgaacaaccatttggtacaacctttttgacaa 44730782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 243
Target Start/End: Complemental strand, 44959109 - 44959080
Alignment:
Q  214 tgatatttgaacaaccatttgatacaactt 243  Q
    ||||||||||||||||||||||||||||||    
T  44959109 tgatatttgaacaaccatttgatacaactt 44959080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 246
Target Start/End: Complemental strand, 4638101 - 4638069
Alignment:
Q  214 tgatatttgaacaaccatttgatacaacttttg 246  Q
    |||||||||||||||||||| ||||||||||||    
T  4638101 tgatatttgaacaaccatttcatacaacttttg 4638069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 252
Target Start/End: Original strand, 36930641 - 36930689
Alignment:
Q  204 aaaagagcactgatatttgaacaaccatttgatacaacttttgtgacaa 252  Q
    ||||||||| ||||||||||||||||||||  |||||| ||| ||||||    
T  36930641 aaaagagcaatgatatttgaacaaccattttgtacaacctttttgacaa 36930689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 246
Target Start/End: Original strand, 45272052 - 45272084
Alignment:
Q  214 tgatatttgaacaaccatttgatacaacttttg 246  Q
    |||||||||||||||||||| ||||||||||||    
T  45272052 tgatatttgaacaaccatttcatacaacttttg 45272084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 246
Target Start/End: Complemental strand, 49425912 - 49425880
Alignment:
Q  214 tgatatttgaacaaccatttgatacaacttttg 246  Q
    |||||||||||||||||||| ||||||||||||    
T  49425912 tgatatttgaacaaccatttcatacaacttttg 49425880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 32)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 207 - 252
Target Start/End: Complemental strand, 51389499 - 51389454
Alignment:
Q  207 agagcactgatatttgaacaaccatttgatacaacttttgtgacaa 252  Q
    |||||| |||||||||||||||||||||||||||||||||||||||    
T  51389499 agagcagtgatatttgaacaaccatttgatacaacttttgtgacaa 51389454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 214 - 252
Target Start/End: Original strand, 5234366 - 5234404
Alignment:
Q  214 tgatatttgaacaaccatttgatacaacttttgtgacaa 252  Q
    |||||||||||||||||||||||||||||||||||||||    
T  5234366 tgatatttgaacaaccatttgatacaacttttgtgacaa 5234404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 214 - 252
Target Start/End: Complemental strand, 31275322 - 31275284
Alignment:
Q  214 tgatatttgaacaaccatttgatacaacttttgtgacaa 252  Q
    |||||||||||||||||||||||||||||||||||||||    
T  31275322 tgatatttgaacaaccatttgatacaacttttgtgacaa 31275284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 204 - 252
Target Start/End: Original strand, 42915104 - 42915152
Alignment:
Q  204 aaaagagcactgatatttgaacaaccatttgatacaacttttgtgacaa 252  Q
    ||||||| | ||||||||||||||| |||||||||||||||||||||||    
T  42915104 aaaagagtagtgatatttgaacaactatttgatacaacttttgtgacaa 42915152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 214 - 252
Target Start/End: Original strand, 36408099 - 36408137
Alignment:
Q  214 tgatatttgaacaaccatttgatacaacttttgtgacaa 252  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  36408099 tgatatttgaacaactatttgatacaacttttgtgacaa 36408137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 214 - 252
Target Start/End: Original strand, 36413222 - 36413260
Alignment:
Q  214 tgatatttgaacaaccatttgatacaacttttgtgacaa 252  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  36413222 tgatatttgaacaactatttgatacaacttttgtgacaa 36413260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 214 - 252
Target Start/End: Complemental strand, 46173713 - 46173675
Alignment:
Q  214 tgatatttgaacaaccatttgatacaacttttgtgacaa 252  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  46173713 tgatatttgaataaccatttgatacaacttttgtgacaa 46173675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 215 - 252
Target Start/End: Complemental strand, 31658094 - 31658057
Alignment:
Q  215 gatatttgaacaaccatttgatacaacttttgtgacaa 252  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  31658094 gatatttgaacaaccatttgatacagcttttgtgacaa 31658057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 204 - 249
Target Start/End: Complemental strand, 47998779 - 47998734
Alignment:
Q  204 aaaagagcactgatatttgaacaaccatttgatacaacttttgtga 249  Q
    ||||||| | |||||||||||||| |||||||||||||||||||||    
T  47998779 aaaagagtagtgatatttgaacaatcatttgatacaacttttgtga 47998734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 252
Target Start/End: Complemental strand, 7795182 - 7795138
Alignment:
Q  208 gagcactgatatttgaacaaccatttgatacaacttttgtgacaa 252  Q
    ||||| |||||||||||||||||||||||||||| ||| ||||||    
T  7795182 gagcaatgatatttgaacaaccatttgatacaacctttatgacaa 7795138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 214 - 252
Target Start/End: Original strand, 2613511 - 2613550
Alignment:
Q  214 tgatatttgaacaaccatttgat-acaacttttgtgacaa 252  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  2613511 tgatatttgaacaaccatttgataacaacttttgtgacaa 2613550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 252
Target Start/End: Complemental strand, 1033324 - 1033286
Alignment:
Q  214 tgatatttgaacaaccatttgatacaacttttgtgacaa 252  Q
    |||||||||||||||||||| | ||||||||||||||||    
T  1033324 tgatatttgaacaaccattttaaacaacttttgtgacaa 1033286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 252
Target Start/End: Complemental strand, 3286994 - 3286956
Alignment:
Q  214 tgatatttgaacaaccatttgatacaacttttgtgacaa 252  Q
    |||||||||||||||||||| | ||||||||||||||||    
T  3286994 tgatatttgaacaaccatttcacacaacttttgtgacaa 3286956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 205 - 243
Target Start/End: Original strand, 3624348 - 3624386
Alignment:
Q  205 aaagagcactgatatttgaacaaccatttgatacaactt 243  Q
    |||||||| |||||||||||||||||||||| |||||||    
T  3624348 aaagagcagtgatatttgaacaaccatttgagacaactt 3624386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 252
Target Start/End: Original strand, 5622464 - 5622502
Alignment:
Q  214 tgatatttgaacaaccatttgatacaacttttgtgacaa 252  Q
    ||||||||||||||||||||  |||||||||||||||||    
T  5622464 tgatatttgaacaaccattttttacaacttttgtgacaa 5622502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 252
Target Start/End: Complemental strand, 15596572 - 15596534
Alignment:
Q  214 tgatatttgaacaaccatttgatacaacttttgtgacaa 252  Q
    |||||||||||||||||||| | ||||||||||||||||    
T  15596572 tgatatttgaacaaccattttaaacaacttttgtgacaa 15596534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 252
Target Start/End: Complemental strand, 23369397 - 23369359
Alignment:
Q  214 tgatatttgaacaaccatttgatacaacttttgtgacaa 252  Q
    ||||||||||||||||||||  |||||||||||||||||    
T  23369397 tgatatttgaacaaccattttttacaacttttgtgacaa 23369359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 252
Target Start/End: Original strand, 37297055 - 37297093
Alignment:
Q  214 tgatatttgaacaaccatttgatacaacttttgtgacaa 252  Q
    ||||||||||||||||||||  |||||||||||||||||    
T  37297055 tgatatttgaacaaccattttttacaacttttgtgacaa 37297093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 252
Target Start/End: Original strand, 37997262 - 37997300
Alignment:
Q  214 tgatatttgaacaaccatttgatacaacttttgtgacaa 252  Q
    ||||||||||||||||||||  |||||||||||||||||    
T  37997262 tgatatttgaacaaccattttttacaacttttgtgacaa 37997300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 252
Target Start/End: Complemental strand, 25476808 - 25476759
Alignment:
Q  203 caaaagagcactgatatttgaacaaccatttgatacaacttttgtgacaa 252  Q
    |||||||| | ||||||||||||| |||||||| ||||||| ||||||||    
T  25476808 caaaagagtaatgatatttgaacatccatttgagacaacttctgtgacaa 25476759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 246
Target Start/End: Complemental strand, 36792518 - 36792477
Alignment:
Q  205 aaagagcactgatatttgaacaaccatttgatacaacttttg 246  Q
    |||||| | |||||||||||||||||||| ||||||||||||    
T  36792518 aaagagtagtgatatttgaacaaccatttcatacaacttttg 36792477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 252
Target Start/End: Complemental strand, 37977298 - 37977253
Alignment:
Q  207 agagcactgatatttgaacaaccatttgatacaacttttgtgacaa 252  Q
    |||||| ||||||||||||||||||||| |||||| ||| ||||||    
T  37977298 agagcaatgatatttgaacaaccatttggtacaacatttttgacaa 37977253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 249
Target Start/End: Original strand, 43174980 - 43175025
Alignment:
Q  204 aaaagagcactgatatttgaacaaccatttgatacaacttttgtga 249  Q
    ||||||| | ||||||||||||||||||||  ||||||||||||||    
T  43174980 aaaagagaaatgatatttgaacaaccattttttacaacttttgtga 43175025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 243
Target Start/End: Complemental strand, 55511043 - 55511006
Alignment:
Q  206 aagagcactgatatttgaacaaccatttgatacaactt 243  Q
    ||||||| ||||||||||||||||||||| ||||||||    
T  55511043 aagagcaatgatatttgaacaaccatttggtacaactt 55511006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 246
Target Start/End: Original strand, 22257091 - 22257123
Alignment:
Q  214 tgatatttgaacaaccatttgatacaacttttg 246  Q
    |||||||||||||||||||| ||||||||||||    
T  22257091 tgatatttgaacaaccatttcatacaacttttg 22257123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 246
Target Start/End: Complemental strand, 31240825 - 31240793
Alignment:
Q  214 tgatatttgaacaaccatttgatacaacttttg 246  Q
    |||||||||||||||||||| ||||||||||||    
T  31240825 tgatatttgaacaaccatttcatacaacttttg 31240793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 252
Target Start/End: Original strand, 38134349 - 38134397
Alignment:
Q  204 aaaagagcactgatatttgaacaaccatttgatacaacttttgtgacaa 252  Q
    ||||||| | ||||||||||||||||||||  ||||| |||||||||||    
T  38134349 aaaagagaaatgatatttgaacaaccattttttacaatttttgtgacaa 38134397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 202 - 246
Target Start/End: Original strand, 39241185 - 39241229
Alignment:
Q  202 acaaaagagcactgatatttgaacaaccatttgatacaacttttg 246  Q
    ||||||||| | |||||||| ||||||||||||| ||||||||||    
T  39241185 acaaaagagtagtgatattttaacaaccatttgagacaacttttg 39241229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 208 - 252
Target Start/End: Complemental strand, 40847549 - 40847505
Alignment:
Q  208 gagcactgatatttgaacaaccatttgatacaacttttgtgacaa 252  Q
    ||||| |||||||||||||||||||||| ||||| ||| ||||||    
T  40847549 gagcaatgatatttgaacaaccatttgacacaacctttttgacaa 40847505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 202 - 234
Target Start/End: Original strand, 42510807 - 42510839
Alignment:
Q  202 acaaaagagcactgatatttgaacaaccatttg 234  Q
    ||||||||||| |||||||||||||||||||||    
T  42510807 acaaaagagcaatgatatttgaacaaccatttg 42510839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 241
Target Start/End: Complemental strand, 46567114 - 46567078
Alignment:
Q  205 aaagagcactgatatttgaacaaccatttgatacaac 241  Q
    |||||||| ||||||||||||||||||||| ||||||    
T  46567114 aaagagcaatgatatttgaacaaccatttggtacaac 46567078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 252
Target Start/End: Original strand, 53583021 - 53583061
Alignment:
Q  212 actgatatttgaacaaccatttgatacaacttttgtgacaa 252  Q
    |||| ||||||||||||||| ||| ||||||||||||||||    
T  53583021 actgttatttgaacaaccatatgagacaacttttgtgacaa 53583061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 204 - 252
Target Start/End: Original strand, 8792485 - 8792533
Alignment:
Q  204 aaaagagcactgatatttgaacaaccatttgatacaacttttgtgacaa 252  Q
    ||||||| | |||||||||||||||||||||||||||||||||||||||    
T  8792485 aaaagagtaatgatatttgaacaaccatttgatacaacttttgtgacaa 8792533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 214 - 252
Target Start/End: Complemental strand, 12142060 - 12142022
Alignment:
Q  214 tgatatttgaacaaccatttgatacaacttttgtgacaa 252  Q
    |||||||||||||||||||||||||||||||||||||||    
T  12142060 tgatatttgaacaaccatttgatacaacttttgtgacaa 12142022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 214 - 252
Target Start/End: Complemental strand, 10591328 - 10591290
Alignment:
Q  214 tgatatttgaacaaccatttgatacaacttttgtgacaa 252  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  10591328 tgatatttgaacaaccatttgagacaacttttgtgacaa 10591290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 206 - 252
Target Start/End: Complemental strand, 32428252 - 32428206
Alignment:
Q  206 aagagcactgatatttgaacaaccatttgatacaacttttgtgacaa 252  Q
    ||||||| ||||||||||||||| |||||||||||||||| ||||||    
T  32428252 aagagcaatgatatttgaacaactatttgatacaacttttatgacaa 32428206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 205 - 252
Target Start/End: Complemental strand, 43445592 - 43445545
Alignment:
Q  205 aaagagcactgatatttgaacaaccatttgatacaacttttgtgacaa 252  Q
    |||||| | |||||||||||||| |||||||||||| |||||||||||    
T  43445592 aaagagtagtgatatttgaacaatcatttgatacaatttttgtgacaa 43445545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 252
Target Start/End: Complemental strand, 5978755 - 5978717
Alignment:
Q  214 tgatatttgaacaaccatttgatacaacttttgtgacaa 252  Q
    |||||||||||||||||| |||||||||| |||||||||    
T  5978755 tgatatttgaacaaccatatgatacaactcttgtgacaa 5978717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 252
Target Start/End: Complemental strand, 6353905 - 6353867
Alignment:
Q  214 tgatatttgaacaaccatttgatacaacttttgtgacaa 252  Q
    ||||||||||| ||| |||||||||||||||||||||||    
T  6353905 tgatatttgaaaaactatttgatacaacttttgtgacaa 6353867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 252
Target Start/End: Original strand, 30941392 - 30941430
Alignment:
Q  214 tgatatttgaacaaccatttgatacaacttttgtgacaa 252  Q
    ||||||||||||||||||||  |||||||||||||||||    
T  30941392 tgatatttgaacaaccattttttacaacttttgtgacaa 30941430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 252
Target Start/End: Complemental strand, 32933723 - 32933685
Alignment:
Q  214 tgatatttgaacaaccatttgatacaacttttgtgacaa 252  Q
    ||||||||||||||  |||||||||||||||||||||||    
T  32933723 tgatatttgaacaattatttgatacaacttttgtgacaa 32933685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 252
Target Start/End: Original strand, 37351885 - 37351923
Alignment:
Q  214 tgatatttgaacaaccatttgatacaacttttgtgacaa 252  Q
    |||||||||||||| ||||||||| ||||||||||||||    
T  37351885 tgatatttgaacaatcatttgatataacttttgtgacaa 37351923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 244
Target Start/End: Complemental strand, 41732706 - 41732668
Alignment:
Q  206 aagagcactgatatttgaacaaccatttgatacaacttt 244  Q
    ||||||| |||||||||||||||||||| ||||||||||    
T  41732706 aagagcaatgatatttgaacaaccatttaatacaacttt 41732668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 252
Target Start/End: Complemental strand, 44895637 - 44895599
Alignment:
Q  214 tgatatttgaacaaccatttgatacaacttttgtgacaa 252  Q
    ||||||||||||||||||||  |||||||||||||||||    
T  44895637 tgatatttgaacaaccattttttacaacttttgtgacaa 44895599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 241
Target Start/End: Complemental strand, 2469878 - 2469841
Alignment:
Q  204 aaaagagcactgatatttgaacaaccatttgatacaac 241  Q
    ||||||||| ||||||||||||||||||||| ||||||    
T  2469878 aaaagagcaatgatatttgaacaaccatttggtacaac 2469841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 246
Target Start/End: Complemental strand, 7807240 - 7807199
Alignment:
Q  205 aaagagcactgatatttgaacaaccatttgatacaacttttg 246  Q
    |||||| | |||||||||||||||||||| ||||||||||||    
T  7807240 aaagagtagtgatatttgaacaaccatttcatacaacttttg 7807199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 246
Target Start/End: Complemental strand, 19426756 - 19426724
Alignment:
Q  214 tgatatttgaacaaccatttgatacaacttttg 246  Q
    |||||||||||||||||||| ||||||||||||    
T  19426756 tgatatttgaacaaccatttcatacaacttttg 19426724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 252
Target Start/End: Complemental strand, 25192959 - 25192911
Alignment:
Q  204 aaaagagcactgatatttgaacaaccatttgatacaacttttgtgacaa 252  Q
    ||||||| | ||||||||||||||||||||  |||||||||||| ||||    
T  25192959 aaaagagaaatgatatttgaacaaccattttttacaacttttgtaacaa 25192911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 246
Target Start/End: Complemental strand, 28597056 - 28597024
Alignment:
Q  214 tgatatttgaacaaccatttgatacaacttttg 246  Q
    |||||||||||||||||||| ||||||||||||    
T  28597056 tgatatttgaacaaccatttcatacaacttttg 28597024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 246
Target Start/End: Original strand, 32154445 - 32154477
Alignment:
Q  214 tgatatttgaacaaccatttgatacaacttttg 246  Q
    |||||||||||||||||||| ||||||||||||    
T  32154445 tgatatttgaacaaccatttcatacaacttttg 32154477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 246
Target Start/End: Complemental strand, 40842583 - 40842551
Alignment:
Q  214 tgatatttgaacaaccatttgatacaacttttg 246  Q
    |||||||||||||||||||| ||||||||||||    
T  40842583 tgatatttgaacaaccatttcatacaacttttg 40842551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 252
Target Start/End: Complemental strand, 46651858 - 46651810
Alignment:
Q  204 aaaagagcactgatatttgaacaaccatttgatacaacttttgtgacaa 252  Q
    ||||||| | |||||||||||||||||| |||||||| | |||||||||    
T  46651858 aaaagagtagtgatatttgaacaaccatatgatacaattcttgtgacaa 46651810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 246
Target Start/End: Original strand, 47424880 - 47424912
Alignment:
Q  214 tgatatttgaacaaccatttgatacaacttttg 246  Q
    |||||||||||||||||||| ||||||||||||    
T  47424880 tgatatttgaacaaccatttcatacaacttttg 47424912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 252
Target Start/End: Original strand, 48866815 - 48866863
Alignment:
Q  204 aaaagagcactgatatttgaacaaccatttgatacaacttttgtgacaa 252  Q
    ||||||| | ||||||||||||| | |||||| ||||||||||||||||    
T  48866815 aaaagagtagtgatatttgaacatctatttgaaacaacttttgtgacaa 48866863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 214 - 252
Target Start/End: Complemental strand, 39595450 - 39595412
Alignment:
Q  214 tgatatttgaacaaccatttgatacaacttttgtgacaa 252  Q
    |||||||||||||||||||||||||||||||||||||||    
T  39595450 tgatatttgaacaaccatttgatacaacttttgtgacaa 39595412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 204 - 252
Target Start/End: Original strand, 2117525 - 2117573
Alignment:
Q  204 aaaagagcactgatatttgaacaaccatttgatacaacttttgtgacaa 252  Q
    ||||||| | ||||||||||||||| |||||||||||||||||||||||    
T  2117525 aaaagagtagtgatatttgaacaactatttgatacaacttttgtgacaa 2117573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 204 - 252
Target Start/End: Complemental strand, 9403699 - 9403651
Alignment:
Q  204 aaaagagcactgatatttgaacaaccatttgatacaacttttgtgacaa 252  Q
    ||||||| | |||||||| ||||||||||||||||||||||||||||||    
T  9403699 aaaagagtagtgatatttaaacaaccatttgatacaacttttgtgacaa 9403651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 205 - 252
Target Start/End: Original strand, 33567125 - 33567172
Alignment:
Q  205 aaagagcactgatatttgaacaaccatttgatacaacttttgtgacaa 252  Q
    |||||| | |||||| ||||||||||||||||||||||||||||||||    
T  33567125 aaagagtagtgatatatgaacaaccatttgatacaacttttgtgacaa 33567172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 214 - 252
Target Start/End: Complemental strand, 125268 - 125230
Alignment:
Q  214 tgatatttgaacaaccatttgatacaacttttgtgacaa 252  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  125268 tgatatttgaacaaccatttgatacaacttttgcgacaa 125230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 241
Target Start/End: Complemental strand, 91400 - 91364
Alignment:
Q  205 aaagagcactgatatttgaacaaccatttgatacaac 241  Q
    |||||||| ||||||||||||||||||||||||||||    
T  91400 aaagagcaatgatatttgaacaaccatttgatacaac 91364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 204 - 244
Target Start/End: Original strand, 26626704 - 26626744
Alignment:
Q  204 aaaagagcactgatatttgaacaaccatttgatacaacttt 244  Q
    ||||||||| ||||||||||||||||||||| |||||||||    
T  26626704 aaaagagcaatgatatttgaacaaccatttgttacaacttt 26626744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 252
Target Start/End: Original strand, 31284283 - 31284327
Alignment:
Q  208 gagcactgatatttgaacaaccatttgatacaacttttgtgacaa 252  Q
    ||||| |||||||||||||||||||| |||||||||||| |||||    
T  31284283 gagcagtgatatttgaacaaccatttcatacaacttttgcgacaa 31284327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 214 - 249
Target Start/End: Complemental strand, 12349961 - 12349926
Alignment:
Q  214 tgatatttgaacaaccatttgatacaacttttgtga 249  Q
    ||||||||||||||| ||||||||||||||||||||    
T  12349961 tgatatttgaacaactatttgatacaacttttgtga 12349926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 252
Target Start/End: Original strand, 9714030 - 9714068
Alignment:
Q  214 tgatatttgaacaaccatttgatacaacttttgtgacaa 252  Q
    |||||||||||||||||| |||||||||| |||||||||    
T  9714030 tgatatttgaacaaccatatgatacaactcttgtgacaa 9714068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 252
Target Start/End: Complemental strand, 11306872 - 11306834
Alignment:
Q  214 tgatatttgaacaaccatttgatacaacttttgtgacaa 252  Q
    ||||||||||||||| ||||||||||||||||| |||||    
T  11306872 tgatatttgaacaactatttgatacaacttttgagacaa 11306834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 252
Target Start/End: Complemental strand, 19522068 - 19522030
Alignment:
Q  214 tgatatttgaacaaccatttgatacaacttttgtgacaa 252  Q
    ||||||||||||||||||||  |||||||||||||||||    
T  19522068 tgatatttgaacaaccattttttacaacttttgtgacaa 19522030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 252
Target Start/End: Original strand, 20719910 - 20719948
Alignment:
Q  214 tgatatttgaacaaccatttgatacaacttttgtgacaa 252  Q
    ||||||||||||| |||||||| ||||||||||||||||    
T  20719910 tgatatttgaacatccatttgagacaacttttgtgacaa 20719948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 252
Target Start/End: Original strand, 24431513 - 24431551
Alignment:
Q  214 tgatatttgaacaaccatttgatacaacttttgtgacaa 252  Q
    |||||||||||||||||||||| |||||| |||||||||    
T  24431513 tgatatttgaacaaccatttgagacaactattgtgacaa 24431551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 252
Target Start/End: Complemental strand, 28306197 - 28306159
Alignment:
Q  214 tgatatttgaacaaccatttgatacaacttttgtgacaa 252  Q
    ||||||||||||||||||||  |||||||||||||||||    
T  28306197 tgatatttgaacaaccattttttacaacttttgtgacaa 28306159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 252
Target Start/End: Complemental strand, 34381188 - 34381150
Alignment:
Q  214 tgatatttgaacaaccatttgatacaacttttgtgacaa 252  Q
    |||||||||||||||||||||||| || |||||||||||    
T  34381188 tgatatttgaacaaccatttgatataatttttgtgacaa 34381150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 252
Target Start/End: Complemental strand, 15639568 - 15639523
Alignment:
Q  207 agagcactgatatttgaacaaccatttgatacaacttttgtgacaa 252  Q
    |||||| ||||||||||||||||||||| |||||| ||| ||||||    
T  15639568 agagcaatgatatttgaacaaccatttggtacaacctttttgacaa 15639523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 241
Target Start/End: Complemental strand, 24792638 - 24792601
Alignment:
Q  204 aaaagagcactgatatttgaacaaccatttgatacaac 241  Q
    ||||||||| ||||||||||||||||||||| ||||||    
T  24792638 aaaagagcaatgatatttgaacaaccatttggtacaac 24792601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 252
Target Start/End: Complemental strand, 38387893 - 38387848
Alignment:
Q  207 agagcactgatatttgaacaaccatttgatacaacttttgtgacaa 252  Q
    |||||| ||||||||||||||||||||| |||||| ||| ||||||    
T  38387893 agagcaatgatatttgaacaaccatttggtacaacctttatgacaa 38387848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 252
Target Start/End: Complemental strand, 43482540 - 43482503
Alignment:
Q  215 gatatttgaacaaccatttgatacaacttttgtgacaa 252  Q
    |||||||||||||| ||||||||||| |||||||||||    
T  43482540 gatatttgaacaactatttgatacaatttttgtgacaa 43482503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 246
Target Start/End: Complemental strand, 3141672 - 3141640
Alignment:
Q  214 tgatatttgaacaaccatttgatacaacttttg 246  Q
    |||||||||||||||||||| ||||||||||||    
T  3141672 tgatatttgaacaaccatttcatacaacttttg 3141640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 208 - 252
Target Start/End: Complemental strand, 7144757 - 7144713
Alignment:
Q  208 gagcactgatatttgaacaaccatttgatacaacttttgtgacaa 252  Q
    ||||| |||||||||| ||||||||||||||||| ||| ||||||    
T  7144757 gagcaatgatatttgagcaaccatttgatacaacctttttgacaa 7144713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 252
Target Start/End: Complemental strand, 19127310 - 19127262
Alignment:
Q  204 aaaagagcactgatatttgaacaaccatttgatacaacttttgtgacaa 252  Q
    ||||||| | |||||||||||||||||||| | |||||||||| |||||    
T  19127310 aaaagagtagtgatatttgaacaaccattttaaacaacttttgcgacaa 19127262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 241
Target Start/End: Complemental strand, 20040959 - 20040923
Alignment:
Q  205 aaagagcactgatatttgaacaaccatttgatacaac 241  Q
    |||||||| ||||||||||||||||||||| ||||||    
T  20040959 aaagagcaatgatatttgaacaaccatttggtacaac 20040923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 216 - 252
Target Start/End: Complemental strand, 26791307 - 26791271
Alignment:
Q  216 atatttgaacaaccatttgatacaacttttgtgacaa 252  Q
    ||||||||||||||||||  |||||||||||||||||    
T  26791307 atatttgaacaaccattttttacaacttttgtgacaa 26791271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 252
Target Start/End: Original strand, 33243626 - 33243674
Alignment:
Q  204 aaaagagcactgatatttgaacaaccatttgatacaacttttgtgacaa 252  Q
    ||||||| | |||||||||||||||||||| | | ||||||||||||||    
T  33243626 aaaagagtaatgatatttgaacaaccatttcagataacttttgtgacaa 33243674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 214 - 252
Target Start/End: Original strand, 7231901 - 7231939
Alignment:
Q  214 tgatatttgaacaaccatttgatacaacttttgtgacaa 252  Q
    |||||||||||||||||||||||||||||||||||||||    
T  7231901 tgatatttgaacaaccatttgatacaacttttgtgacaa 7231939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 216 - 252
Target Start/End: Complemental strand, 11173624 - 11173588
Alignment:
Q  216 atatttgaacaaccatttgatacaacttttgtgacaa 252  Q
    |||||||||||||||||||||||||||||||||||||    
T  11173624 atatttgaacaaccatttgatacaacttttgtgacaa 11173588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 241
Target Start/End: Original strand, 25959426 - 25959464
Alignment:
Q  203 caaaagagcactgatatttgaacaaccatttgatacaac 241  Q
    |||||||||| ||||||||||||||||||||||||||||    
T  25959426 caaaagagcaatgatatttgaacaaccatttgatacaac 25959464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 214 - 252
Target Start/End: Complemental strand, 29706079 - 29706041
Alignment:
Q  214 tgatatttgaacaaccatttgatacaacttttgtgacaa 252  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  29706079 tgatatttgaacaactatttgatacaacttttgtgacaa 29706041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 214 - 252
Target Start/End: Complemental strand, 46473304 - 46473266
Alignment:
Q  214 tgatatttgaacaaccatttgatacaacttttgtgacaa 252  Q
    |||||||||||||||||||||||||||||||| ||||||    
T  46473304 tgatatttgaacaaccatttgatacaacttttatgacaa 46473266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 204 - 252
Target Start/End: Complemental strand, 51973442 - 51973394
Alignment:
Q  204 aaaagagcactgatatttgaacaaccatttgatacaacttttgtgacaa 252  Q
    ||||||| | ||||||||||||| ||||||| |||||||||||||||||    
T  51973442 aaaagagaaatgatatttgaacatccatttggtacaacttttgtgacaa 51973394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 214 - 249
Target Start/End: Complemental strand, 44695188 - 44695153
Alignment:
Q  214 tgatatttgaacaaccatttgatacaacttttgtga 249  Q
    |||||||||||||||||||| |||||||||||||||    
T  44695188 tgatatttgaacaaccatttcatacaacttttgtga 44695153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 252
Target Start/End: Complemental strand, 9028049 - 9028011
Alignment:
Q  214 tgatatttgaacaaccatttgatacaacttttgtgacaa 252  Q
    ||||||||||||||||||||||||| | |||||||||||    
T  9028049 tgatatttgaacaaccatttgatacgatttttgtgacaa 9028011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 252
Target Start/End: Original strand, 20380784 - 20380822
Alignment:
Q  214 tgatatttgaacaaccatttgatacaacttttgtgacaa 252  Q
    |||||||||||||||||||| | ||||||||||||||||    
T  20380784 tgatatttgaacaaccattttaaacaacttttgtgacaa 20380822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 252
Target Start/End: Original strand, 26014818 - 26014856
Alignment:
Q  214 tgatatttgaacaaccatttgatacaacttttgtgacaa 252  Q
    ||||||||||||||||||||  |||||||||||||||||    
T  26014818 tgatatttgaacaaccattttttacaacttttgtgacaa 26014856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 252
Target Start/End: Original strand, 28300541 - 28300579
Alignment:
Q  214 tgatatttgaacaaccatttgatacaacttttgtgacaa 252  Q
    |||||||||||||||||| |||||||||| |||||||||    
T  28300541 tgatatttgaacaaccatatgatacaactcttgtgacaa 28300579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 252
Target Start/End: Original strand, 32981008 - 32981054
Alignment:
Q  206 aagagcactgatatttgaacaaccatttgatacaacttttgtgacaa 252  Q
    ||||||| ||||||||||||||||||||| ||||| |||| ||||||    
T  32981008 aagagcaatgatatttgaacaaccatttggtacaaattttttgacaa 32981054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 252
Target Start/End: Complemental strand, 42357145 - 42357107
Alignment:
Q  214 tgatatttgaacaaccatttgatacaacttttgtgacaa 252  Q
    ||||||||||||||||||||  |||||||||||||||||    
T  42357145 tgatatttgaacaaccattttttacaacttttgtgacaa 42357107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 252
Target Start/End: Original strand, 46623913 - 46623951
Alignment:
Q  214 tgatatttgaacaaccatttgatacaacttttgtgacaa 252  Q
    ||||||||||||||||||||  |||||||||||||||||    
T  46623913 tgatatttgaacaaccattttttacaacttttgtgacaa 46623951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 252
Target Start/End: Complemental strand, 46953125 - 46953087
Alignment:
Q  214 tgatatttgaacaaccatttgatacaacttttgtgacaa 252  Q
    ||||||||||||||| |||||||||||||||| ||||||    
T  46953125 tgatatttgaacaactatttgatacaacttttatgacaa 46953087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 252
Target Start/End: Original strand, 47472335 - 47472373
Alignment:
Q  214 tgatatttgaacaaccatttgatacaacttttgtgacaa 252  Q
    ||||||||||||||||||||  |||||||||||||||||    
T  47472335 tgatatttgaacaaccattttttacaacttttgtgacaa 47472373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 252
Target Start/End: Original strand, 52939659 - 52939697
Alignment:
Q  214 tgatatttgaacaaccatttgatacaacttttgtgacaa 252  Q
    ||||||||||||||||||||  |||||||||||||||||    
T  52939659 tgatatttgaacaaccattttttacaacttttgtgacaa 52939697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 246
Target Start/End: Complemental strand, 31997988 - 31997947
Alignment:
Q  205 aaagagcactgatatttgaacaaccatttgatacaacttttg 246  Q
    |||||| | |||||||||||||||||||||| ||||||||||    
T  31997988 aaagagtagtgatatttgaacaaccatttgagacaacttttg 31997947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 246
Target Start/End: Complemental strand, 6126631 - 6126599
Alignment:
Q  214 tgatatttgaacaaccatttgatacaacttttg 246  Q
    |||||||||||||||||||| ||||||||||||    
T  6126631 tgatatttgaacaaccatttcatacaacttttg 6126599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 246
Target Start/End: Original strand, 31249216 - 31249248
Alignment:
Q  214 tgatatttgaacaaccatttgatacaacttttg 246  Q
    |||||||||||||||||||| ||||||||||||    
T  31249216 tgatatttgaacaaccatttcatacaacttttg 31249248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 246
Target Start/End: Original strand, 32687854 - 32687886
Alignment:
Q  214 tgatatttgaacaaccatttgatacaacttttg 246  Q
    ||||||||||||||| |||||||||||||||||    
T  32687854 tgatatttgaacaactatttgatacaacttttg 32687886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 246
Target Start/End: Original strand, 43169649 - 43169681
Alignment:
Q  214 tgatatttgaacaaccatttgatacaacttttg 246  Q
    |||||||||||||||||||| ||||||||||||    
T  43169649 tgatatttgaacaaccatttcatacaacttttg 43169681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 246
Target Start/End: Complemental strand, 46003883 - 46003851
Alignment:
Q  214 tgatatttgaacaaccatttgatacaacttttg 246  Q
    |||||||||||||||||||| ||||||||||||    
T  46003883 tgatatttgaacaaccatttcatacaacttttg 46003851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 246
Target Start/End: Original strand, 51464161 - 51464193
Alignment:
Q  214 tgatatttgaacaaccatttgatacaacttttg 246  Q
    |||||||||||||||||||| ||||||||||||    
T  51464161 tgatatttgaacaaccattttatacaacttttg 51464193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 246
Target Start/End: Complemental strand, 51650533 - 51650501
Alignment:
Q  214 tgatatttgaacaaccatttgatacaacttttg 246  Q
    |||||||||||||||||||| ||||||||||||    
T  51650533 tgatatttgaacaaccatttcatacaacttttg 51650501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 214 - 249
Target Start/End: Original strand, 2241721 - 2241756
Alignment:
Q  214 tgatatttgaacaaccatttgatacaacttttgtga 249  Q
    ||||||||||||||||||||||||||||||||||||    
T  2241721 tgatatttgaacaaccatttgatacaacttttgtga 2241756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 205 - 252
Target Start/End: Complemental strand, 32253966 - 32253919
Alignment:
Q  205 aaagagcactgatatttgaacaaccatttgatacaacttttgtgacaa 252  Q
    |||||| | ||||||||||||||| ||||| |||||||||||||||||    
T  32253966 aaagagtagtgatatttgaacaactatttggtacaacttttgtgacaa 32253919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 252
Target Start/End: Complemental strand, 8098660 - 8098622
Alignment:
Q  214 tgatatttgaacaaccatttgatacaacttttgtgacaa 252  Q
    ||||||||||||||||||||  |||||||||||||||||    
T  8098660 tgatatttgaacaaccattttttacaacttttgtgacaa 8098622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 246
Target Start/End: Complemental strand, 9954735 - 9954693
Alignment:
Q  204 aaaagagcactgatatttgaacaaccatttgatacaacttttg 246  Q
    ||||||| | |||||||||||||||||||| ||||||||||||    
T  9954735 aaaagaggagtgatatttgaacaaccatttaatacaacttttg 9954693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 252
Target Start/End: Complemental strand, 22079628 - 22079590
Alignment:
Q  214 tgatatttgaacaaccatttgatacaacttttgtgacaa 252  Q
    ||||||||||||||||||||  |||||||||||||||||    
T  22079628 tgatatttgaacaaccattttttacaacttttgtgacaa 22079590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 252
Target Start/End: Complemental strand, 25811903 - 25811865
Alignment:
Q  214 tgatatttgaacaaccatttgatacaacttttgtgacaa 252  Q
    ||||||||||||||||||||  |||||||||||||||||    
T  25811903 tgatatttgaacaaccattttttacaacttttgtgacaa 25811865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 252
Target Start/End: Complemental strand, 30733185 - 30733147
Alignment:
Q  214 tgatatttgaacaaccatttgatacaacttttgtgacaa 252  Q
    |||||||| ||||||||||||| ||||||||||||||||    
T  30733185 tgatatttaaacaaccatttgagacaacttttgtgacaa 30733147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 252
Target Start/End: Original strand, 32853039 - 32853077
Alignment:
Q  214 tgatatttgaacaaccatttgatacaacttttgtgacaa 252  Q
    ||||||||||||||| ||||||||||| |||||||||||    
T  32853039 tgatatttgaacaactatttgatacaatttttgtgacaa 32853077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 252
Target Start/End: Original strand, 34047393 - 34047431
Alignment:
Q  214 tgatatttgaacaaccatttgatacaacttttgtgacaa 252  Q
    ||||||||||||||||||||  |||||||||||||||||    
T  34047393 tgatatttgaacaaccattttttacaacttttgtgacaa 34047431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 245
Target Start/End: Complemental strand, 10628466 - 10628425
Alignment:
Q  204 aaaagagcactgatatttgaacaaccatttgatacaactttt 245  Q
    ||||||| | ||||||||||||||| ||||||||||||||||    
T  10628466 aaaagaggagtgatatttgaacaactatttgatacaactttt 10628425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 252
Target Start/End: Original strand, 16336955 - 16337003
Alignment:
Q  204 aaaagagcactgatatttgaacaaccatttgatacaacttttgtgacaa 252  Q
    ||||||| | ||||||||||||| |||||||| |||||| |||||||||    
T  16336955 aaaagagtaatgatatttgaacatccatttgagacaactcttgtgacaa 16337003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 208 - 252
Target Start/End: Original strand, 25567382 - 25567426
Alignment:
Q  208 gagcactgatatttgaacaaccatttgatacaacttttgtgacaa 252  Q
    ||||| ||||||||||||||||||||| |||||| ||| ||||||    
T  25567382 gagcaatgatatttgaacaaccatttggtacaacctttatgacaa 25567426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 205 - 252
Target Start/End: Complemental strand, 2464322 - 2464275
Alignment:
Q  205 aaagagcactgatatttgaacaaccatttgatacaacttttgtgacaa 252  Q
    |||||| | ||||||||||||| |||||||||||||||||||||||||    
T  2464322 aaagagaaatgatatttgaacatccatttgatacaacttttgtgacaa 2464275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 214 - 252
Target Start/End: Original strand, 11164271 - 11164309
Alignment:
Q  214 tgatatttgaacaaccatttgatacaacttttgtgacaa 252  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  11164271 tgatatttgaacaactatttgatacaacttttgtgacaa 11164309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 204 - 252
Target Start/End: Complemental strand, 19637413 - 19637365
Alignment:
Q  204 aaaagagcactgatatttgaacaaccatttgatacaacttttgtgacaa 252  Q
    ||||||||| ||||||||||||||||||||| |||||| ||| ||||||    
T  19637413 aaaagagcaatgatatttgaacaaccatttggtacaacctttatgacaa 19637365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 204 - 252
Target Start/End: Complemental strand, 19836006 - 19835958
Alignment:
Q  204 aaaagagcactgatatttgaacaaccatttgatacaacttttgtgacaa 252  Q
    ||||||||| ||||||||||||||||||||| |||||| ||| ||||||    
T  19836006 aaaagagcaatgatatttgaacaaccatttggtacaacctttatgacaa 19835958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 205 - 252
Target Start/End: Complemental strand, 3091926 - 3091879
Alignment:
Q  205 aaagagcactgatatttgaacaaccatttgatacaacttttgtgacaa 252  Q
    |||||| | ||||||||||||||  |||||||||||||||||||||||    
T  3091926 aaagagtagtgatatttgaacaattatttgatacaacttttgtgacaa 3091879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 198 - 241
Target Start/End: Original strand, 19668066 - 19668109
Alignment:
Q  198 attgacaaaagagcactgatatttgaacaaccatttgatacaac 241  Q
    |||| |||||| ||| ||||||||||||||||||||||||||||    
T  19668066 attggcaaaagggcaatgatatttgaacaaccatttgatacaac 19668109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 205 - 252
Target Start/End: Complemental strand, 36133159 - 36133112
Alignment:
Q  205 aaagagcactgatatttgaacaaccatttgatacaacttttgtgacaa 252  Q
    |||||| | ||||||||||||||| |||| ||||||||||||||||||    
T  36133159 aaagagtagtgatatttgaacaactatttcatacaacttttgtgacaa 36133112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 252
Target Start/End: Complemental strand, 12600224 - 12600186
Alignment:
Q  214 tgatatttgaacaaccatttgatacaacttttgtgacaa 252  Q
    ||||||||||||||| |||| ||||||||||||||||||    
T  12600224 tgatatttgaacaactatttcatacaacttttgtgacaa 12600186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 252
Target Start/End: Complemental strand, 18254274 - 18254236
Alignment:
Q  214 tgatatttgaacaaccatttgatacaacttttgtgacaa 252  Q
    ||||||||||||||||||||  |||||||||||||||||    
T  18254274 tgatatttgaacaaccattttttacaacttttgtgacaa 18254236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 246
Target Start/End: Original strand, 34138931 - 34138963
Alignment:
Q  214 tgatatttgaacaaccatttgatacaacttttg 246  Q
    |||||||||||||||||||| ||||||||||||    
T  34138931 tgatatttgaacaaccatttcatacaacttttg 34138963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 252
Target Start/End: Original strand, 43650432 - 43650480
Alignment:
Q  204 aaaagagcactgatatttgaacaaccatttgatacaacttttgtgacaa 252  Q
    ||||||| | |||||||| ||||| ||||||||||||||| ||||||||    
T  43650432 aaaagagtaatgatatttaaacaatcatttgatacaacttatgtgacaa 43650480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 246
Target Start/End: Original strand, 45515494 - 45515526
Alignment:
Q  214 tgatatttgaacaaccatttgatacaacttttg 246  Q
    |||||||||||||||||||| ||||||||||||    
T  45515494 tgatatttgaacaaccatttcatacaacttttg 45515526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 214 - 245
Target Start/End: Complemental strand, 36178 - 36147
Alignment:
Q  214 tgatatttgaacaaccatttgatacaactttt 245  Q
    ||||||||||||||||||||||||||||||||    
T  36178 tgatatttgaacaaccatttgatacaactttt 36147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 214 - 252
Target Start/End: Complemental strand, 20284884 - 20284845
Alignment:
Q  214 tgatatttgaacaaccatttgat-acaacttttgtgacaa 252  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  20284884 tgatatttgaacaaccatttgatgacaacttttgtgacaa 20284845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 214 - 252
Target Start/End: Complemental strand, 21071513 - 21071474
Alignment:
Q  214 tgatatttgaacaaccatttgat-acaacttttgtgacaa 252  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  21071513 tgatatttgaacaaccatttgatgacaacttttgtgacaa 21071474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 205 - 252
Target Start/End: Complemental strand, 23258217 - 23258170
Alignment:
Q  205 aaagagcactgatatttgaacaaccatttgatacaacttttgtgacaa 252  Q
    |||||| | |||||||||||||||||||||| |||| |||||||||||    
T  23258217 aaagagtagtgatatttgaacaaccatttgaaacaatttttgtgacaa 23258170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 214 - 245
Target Start/End: Original strand, 40413258 - 40413289
Alignment:
Q  214 tgatatttgaacaaccatttgatacaactttt 245  Q
    ||||||||||||||||||||||||||||||||    
T  40413258 tgatatttgaacaaccatttgatacaactttt 40413289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 252
Target Start/End: Complemental strand, 7678908 - 7678870
Alignment:
Q  214 tgatatttgaacaaccatttgatacaacttttgtgacaa 252  Q
    ||||||||||||||| |||||||||||||||||| ||||    
T  7678908 tgatatttgaacaactatttgatacaacttttgtaacaa 7678870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 252
Target Start/End: Original strand, 13971131 - 13971169
Alignment:
Q  214 tgatatttgaacaaccatttgatacaacttttgtgacaa 252  Q
    ||||||||||||| |||||| ||||||||||||||||||    
T  13971131 tgatatttgaacatccatttcatacaacttttgtgacaa 13971169  T

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Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 252
Target Start/End: Original strand, 21273605 - 21273643
Alignment:
Q  214 tgatatttgaacaaccatttgatacaacttttgtgacaa 252  Q
    ||||||||||||||| |||| ||||||||||||||||||    
T  21273605 tgatatttgaacaactatttcatacaacttttgtgacaa 21273643  T

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Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 252
Target Start/End: Original strand, 22719446 - 22719484
Alignment:
Q  214 tgatatttgaacaaccatttgatacaacttttgtgacaa 252  Q
    ||||||||||||||||||||  |||||||||||||||||    
T  22719446 tgatatttgaacaaccattttttacaacttttgtgacaa 22719484  T

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Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 252
Target Start/End: Original strand, 27325764 - 27325802
Alignment:
Q  214 tgatatttgaacaaccatttgatacaacttttgtgacaa 252  Q
    ||||||||||||||||||||  |||||||||||||||||    
T  27325764 tgatatttgaacaaccattttttacaacttttgtgacaa 27325802  T

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Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 252
Target Start/End: Complemental strand, 28927857 - 28927819
Alignment:
Q  214 tgatatttgaacaaccatttgatacaacttttgtgacaa 252  Q
    |||||||||||||||||||||||| || |||||||||||    
T  28927857 tgatatttgaacaaccatttgataaaatttttgtgacaa 28927819  T

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Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 252
Target Start/End: Complemental strand, 31249589 - 31249551
Alignment:
Q  214 tgatatttgaacaaccatttgatacaacttttgtgacaa 252  Q
    ||||||||||||||||||||  |||||||||||||||||    
T  31249589 tgatatttgaacaaccattttttacaacttttgtgacaa 31249551  T

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Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 246
Target Start/End: Complemental strand, 34474137 - 34474095
Alignment:
Q  204 aaaagagcactgatatttgaacaaccatttgatacaacttttg 246  Q
    ||||||| | |||||||||||||||||||| ||||||||||||    
T  34474137 aaaagagtaatgatatttgaacaaccatttcatacaacttttg 34474095  T

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Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 252
Target Start/End: Complemental strand, 42443294 - 42443244
Alignment:
Q  202 acaaaagagcactgatatttgaacaaccatttgatacaacttttgtgacaa 252  Q
    ||||||||||| ||||||||||||||| ||||| ||||| |||| ||||||    
T  42443294 acaaaagagcaatgatatttgaacaactatttggtacaaattttttgacaa 42443244  T

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Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 252
Target Start/End: Complemental strand, 5502549 - 5502500
Alignment:
Q  203 caaaagagcactgatatttgaacaaccatttgatacaacttttgtgacaa 252  Q
    |||||||| | |||||||||||||| ||||||||| || |||||||||||    
T  5502549 caaaagagtagtgatatttgaacaatcatttgatataatttttgtgacaa 5502500  T

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Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 251
Target Start/End: Original strand, 9046966 - 9047003
Alignment:
Q  214 tgatatttgaacaaccatttgatacaacttttgtgaca 251  Q
    ||||||||||||||| ||||||||||| ||||||||||    
T  9046966 tgatatttgaacaactatttgatacaatttttgtgaca 9047003  T

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Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 252
Target Start/End: Original strand, 12045537 - 12045586
Alignment:
Q  203 caaaagagcactgatatttgaacaaccatttgatacaacttttgtgacaa 252  Q
    |||||||||| ||||||||||||||||||||| || ||| ||| ||||||    
T  12045537 caaaagagcaatgatatttgaacaaccatttggtataacctttttgacaa 12045586  T

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Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 246
Target Start/End: Complemental strand, 32175141 - 32175100
Alignment:
Q  205 aaagagcactgatatttgaacaaccatttgatacaacttttg 246  Q
    |||||| | |||||||||||||||||||| ||||||||||||    
T  32175141 aaagagtaatgatatttgaacaaccatttcatacaacttttg 32175100  T

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Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 251
Target Start/End: Original strand, 44672128 - 44672165
Alignment:
Q  214 tgatatttgaacaaccatttgatacaacttttgtgaca 251  Q
    ||||||||||||||  ||||||||||||||||||||||    
T  44672128 tgatatttgaacaattatttgatacaacttttgtgaca 44672165  T

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Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 246
Target Start/End: Complemental strand, 9963862 - 9963830
Alignment:
Q  214 tgatatttgaacaaccatttgatacaacttttg 246  Q
    |||||||||||||||||||| ||||||||||||    
T  9963862 tgatatttgaacaaccattttatacaacttttg 9963830  T

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Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 246
Target Start/End: Original strand, 30925549 - 30925581
Alignment:
Q  214 tgatatttgaacaaccatttgatacaacttttg 246  Q
    |||||||||||||||||||| ||||||||||||    
T  30925549 tgatatttgaacaaccattttatacaacttttg 30925581  T

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Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 208 - 240
Target Start/End: Complemental strand, 36740494 - 36740462
Alignment:
Q  208 gagcactgatatttgaacaaccatttgatacaa 240  Q
    ||||| |||||||||||||||||||||||||||    
T  36740494 gagcaatgatatttgaacaaccatttgatacaa 36740462  T

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Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 246
Target Start/End: Complemental strand, 45101572 - 45101540
Alignment:
Q  214 tgatatttgaacaaccatttgatacaacttttg 246  Q
    |||||||||||||||||||| ||||||||||||    
T  45101572 tgatatttgaacaaccatttcatacaacttttg 45101540  T

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Target: scaffold0115 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 252
Target Start/End: Original strand, 15084 - 15122
Alignment:
Q  214 tgatatttgaacaaccatttgatacaacttttgtgacaa 252  Q
    ||||||||||||||| ||||| |||||||||||||||||    
T  15084 tgatatttgaacaactatttggtacaacttttgtgacaa 15122  T

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Target: scaffold0036 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 252
Target Start/End: Complemental strand, 18179 - 18141
Alignment:
Q  214 tgatatttgaacaaccatttgatacaacttttgtgacaa 252  Q
    ||||||||||||||| |||||||||||||||| ||||||    
T  18179 tgatatttgaacaactatttgatacaacttttatgacaa 18141  T

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Target: scaffold0166 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 241
Target Start/End: Complemental strand, 35021 - 34984
Alignment:
Q  204 aaaagagcactgatatttgaacaaccatttgatacaac 241  Q
    ||||||||| ||||||||||||||||||||| ||||||    
T  35021 aaaagagcaatgatatttgaacaaccatttggtacaac 34984  T

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Target: scaffold0501 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0501
Description:

Target: scaffold0501; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 208 - 252
Target Start/End: Original strand, 10405 - 10449
Alignment:
Q  208 gagcactgatatttgaacaaccatttgatacaacttttgtgacaa 252  Q
    ||||| || ||||||||||||||| ||| ||||||||||||||||    
T  10405 gagcagtgttatttgaacaaccatatgagacaacttttgtgacaa 10449  T

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Target: scaffold0184 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 208 - 252
Target Start/End: Original strand, 16483 - 16527
Alignment:
Q  208 gagcactgatatttgaacaaccatttgatacaacttttgtgacaa 252  Q
    ||||| |||||||| |||||||||||| |||||||||| ||||||    
T  16483 gagcaatgatatttcaacaaccatttggtacaacttttttgacaa 16527  T

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Target: scaffold0078 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 208 - 252
Target Start/End: Complemental strand, 56361 - 56317
Alignment:
Q  208 gagcactgatatttgaacaaccatttgatacaacttttgtgacaa 252  Q
    ||||| |||||||| |||||||||||| |||||||||| ||||||    
T  56361 gagcaatgatatttcaacaaccatttggtacaacttttttgacaa 56317  T

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Target: scaffold0060 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 246
Target Start/End: Complemental strand, 6993 - 6961
Alignment:
Q  214 tgatatttgaacaaccatttgatacaacttttg 246  Q
    |||||||||||||||||||| ||||||||||||    
T  6993 tgatatttgaacaaccattttatacaacttttg 6961  T

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