View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18982_low_79 (Length: 252)
Name: NF18982_low_79
Description: NF18982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18982_low_79 |
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| [»] scaffold0016 (1 HSPs) |
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| [»] scaffold0001 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 149; Significance: 8e-79; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 14 - 178
Target Start/End: Complemental strand, 26544554 - 26544391
Alignment:
| Q |
14 |
agagagggttaagaaggccaaacctggtgttgtgtctgctgttcttacatcaaatgatgccactgagactaaggtaagctaaatcatgtcgagggatccg |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26544554 |
agagagggttaagaaggccaaacctggtgttgtgtctgctgttcttacatcaaatgatgccactgagactaaggtaagctaaatcatgtcgagggatccg |
26544455 |
T |
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| Q |
114 |
tcatggttttgaattacattgcgaacttttgtattgtcaaaaaatcttggaaaatatgttcaaaa |
178 |
Q |
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| T |
26544454 |
tcatggttttcaattacattgcgaacttttgtattgtca-aaaatcttggaaaatatggtcaaaa |
26544391 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 176 - 252
Target Start/End: Complemental strand, 26544360 - 26544284
Alignment:
| Q |
176 |
aaaatcctttatattgcggacacaattttggttgtggaccacggtttaaaaccatgggatccattttctaccatttt |
252 |
Q |
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||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26544360 |
aaaatcctttatactgcggacacaattttggctgtggaccacggtttaaaaccatgggatccattttctaccatttt |
26544284 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 77; Significance: 8e-36; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 14 - 130
Target Start/End: Complemental strand, 43106 - 42990
Alignment:
| Q |
14 |
agagagggttaagaaggccaaacctggtgttgtgtctgctgttcttacatcaaatgatgccactgagactaaggtaagctaaatcatgtcgagggatccg |
113 |
Q |
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|||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| |||||||| | ||||| | |
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| T |
43106 |
agagagggttaagaaggccaaatatggtgttgtctctgctgttcttacatcaaatgatgccactgagactaagataagctgaatcatgtttacggatctg |
43007 |
T |
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| Q |
114 |
tcatggttttgaattac |
130 |
Q |
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| T |
43006 |
tcatgcttttgaattac |
42990 |
T |
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Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 43 - 129
Target Start/End: Complemental strand, 25283956 - 25283870
Alignment:
| Q |
43 |
ttgtgtctgctgttcttacatcaaatgatgccactgagactaaggtaagctaaatcatgtcgagggatccgtcatggttttgaatta |
129 |
Q |
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||||||||||| ||||||||||||||| |||| |||||| ||||||||| | |||||||| ||||||||||||||||||||||||| |
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| T |
25283956 |
ttgtgtctgctattcttacatcaaatgttgccgctgagattaaggtaagtttaatcatgtttagggatccgtcatggttttgaatta |
25283870 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 129
Target Start/End: Original strand, 3149 - 3195
Alignment:
| Q |
83 |
taaggtaagctaaatcatgtcgagggatccgtcatggttttgaatta |
129 |
Q |
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||||||||||| || ||||| ||||||||||||||||||||||||| |
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| T |
3149 |
taaggtaagcttaaccatgtttagggatccgtcatggttttgaatta |
3195 |
T |
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