View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18982_low_82 (Length: 246)
Name: NF18982_low_82
Description: NF18982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18982_low_82 |
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Alignment Details
Target: chr5 (Bit Score: 210; Significance: 1e-115; HSPs: 11)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 11 - 228
Target Start/End: Complemental strand, 39451932 - 39451715
Alignment:
| Q |
11 |
cacagatcagaaagagtgtaatcagaaggtgcagccatggcgccctttggtgctggtttacggagagaccatacgaagtgggccccactattctcaatag |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39451932 |
cacagatcagaaagagtgtaatcagaaggtgcagccatggcgccctttggtgctggtttacggagagaccatacgaagtgggccccactattctcaatag |
39451833 |
T |
|
| Q |
111 |
catgtgcgatctccttaacctgatcctcatcgaaacaacccctgctcccaaagcagaggaaaactacagaagaaagaggttgatcatcaagccagttgat |
210 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
39451832 |
catgtgcgatctccttaacctggtcctcatcgaaacaacccctgctcccaaagcagaggaaaacaacagaagaaagaggttgatcatcaagccagttgat |
39451733 |
T |
|
| Q |
211 |
gatatcagaaccaacaac |
228 |
Q |
| |
|
|||||||||||||||||| |
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|
| T |
39451732 |
gatatcagaaccaacaac |
39451715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 11 - 227
Target Start/End: Complemental strand, 39455560 - 39455343
Alignment:
| Q |
11 |
cacagatcagaaagagtgtaatcagaaggtgcagccatggcgcccttt-ggtgctggtttacggagagaccatacgaagtgggccccactattctcaata |
109 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||| |||||||| || ||| | ||||||||||||||||||| |||||||| | ||||||||||||| |
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| T |
39455560 |
cacaaatcagaaagagtgtaatcagaaggtgcagccctggcgccccttcggtacaggtttacggagagaccatatgaagtgggacttactattctcaata |
39455461 |
T |
|
| Q |
110 |
gcatgtgcgatctccttaacctgatcctcatcgaaacaacccctgctcccaaagcagaggaaaactacagaagaaagaggttgatcatcaagccagttga |
209 |
Q |
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||| ||||||||||||||||||||||||||| |||||||| |||| || ||||| |||||||| || || ||||||||||||||||||||||| |||| |
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| T |
39455460 |
gcacatgcgatctccttaacctgatcctcatcaaaacaacctttgcttccgaagcaaaggaaaacgacggaggaaagaggttgatcatcaagccacttga |
39455361 |
T |
|
| Q |
210 |
tgatatcagaaccaacaa |
227 |
Q |
| |
|
|||||||||||||||||| |
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|
| T |
39455360 |
tgatatcagaaccaacaa |
39455343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 16 - 217
Target Start/End: Original strand, 39463803 - 39464004
Alignment:
| Q |
16 |
atcagaaagagtgtaatcagaaggtgcagccatggcgccctttggtgctggtttacggagagaccatacgaagtgggccccactattctcaatagcatgt |
115 |
Q |
| |
|
||||||||||| ||||||||| || ||| ||||||||||||||||| |||||||| |||||||| || ||| | ||||||||||||||||||||| || |
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| T |
39463803 |
atcagaaagagggtaatcagatggcgcaatcatggcgccctttggtgggggtttacgtagagaccaaacaaagcgagccccactattctcaatagcaagt |
39463902 |
T |
|
| Q |
116 |
gcgatctccttaacctgatcctcatcgaaacaacccctgctcccaaagcagaggaaaactacagaagaaagaggttgatcatcaagccagttgatgatat |
215 |
Q |
| |
|
|| ||||||||||||||||| ||||||||| |||| |||||||| ||||||||||||||||| || ||| ||||||||||||||||||| |||||||||| |
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| T |
39463903 |
gcaatctccttaacctgatcttcatcgaaagaacctctgctcccgaagcagaggaaaactactgaggaaggaggttgatcatcaagccacttgatgatat |
39464002 |
T |
|
| Q |
216 |
ca |
217 |
Q |
| |
|
|| |
|
|
| T |
39464003 |
ca |
39464004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 16 - 204
Target Start/End: Complemental strand, 39476439 - 39476251
Alignment:
| Q |
16 |
atcagaaagagtgtaatcagaaggtgcagccatggcgccctttggtgctggtttacggagagaccatacgaagtgggccccactattctcaatagcatgt |
115 |
Q |
| |
|
|||| |||||| |||||| || ||||||||||| | |||||||| || |||||||| |||||||| |||||| | |||||||||||||||| ||||||| |
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|
| T |
39476439 |
atcataaagagggtaatccgagggtgcagccatagtgccctttgctggaggtttacgcagagaccacacgaagcgtgccccactattctcaacagcatgt |
39476340 |
T |
|
| Q |
116 |
gcgatctccttaacctgatcctcatcgaaacaacccctgctcccaaagcagaggaaaactacagaagaaagaggttgatcatcaagcca |
204 |
Q |
| |
|
|||||||||||||||||||| ||||| ||| ||||||| ||||| ||||||||||||||||| || ||| ||||||||||||||||||| |
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|
| T |
39476339 |
gcgatctccttaacctgatcttcatcaaaataacccctactcccgaagcagaggaaaactacggaggaaggaggttgatcatcaagcca |
39476251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 16 - 217
Target Start/End: Complemental strand, 39487392 - 39487191
Alignment:
| Q |
16 |
atcagaaagagtgtaatcagaaggtgcagccatggcgccctttggtgctggtttacggagagaccatacgaagtgggccccactattctcaatagcatgt |
115 |
Q |
| |
|
||||||||||| ||||||||| |||| | ||||| ||||| |||| |||||||| |||||||| || || |||| |||| |||||||||||||||| |
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|
| T |
39487392 |
atcagaaagagggtaatcagagggtgaaaccatgattcccttcggtgagggtttacgcagagaccacacaaaacgggctccacaattctcaatagcatgt |
39487293 |
T |
|
| Q |
116 |
gcgatctccttaacctgatcctcatcgaaacaacccctgctcccaaagcagaggaaaactacagaagaaagaggttgatcatcaagccagttgatgatat |
215 |
Q |
| |
|
|| ||||| ||||||||||||||||||||| | ||||||||||| ||||||||||||||||| || ||| ||||||||||||||||||| |||||||||| |
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| T |
39487292 |
gcaatctctttaacctgatcctcatcgaaagagcccctgctcccgaagcagaggaaaactaccgaggaaggaggttgatcatcaagccacttgatgatat |
39487193 |
T |
|
| Q |
216 |
ca |
217 |
Q |
| |
|
|| |
|
|
| T |
39487192 |
ca |
39487191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 17 - 217
Target Start/End: Complemental strand, 39461179 - 39460976
Alignment:
| Q |
17 |
tcagaaagagtgtaatcagaaggtgcagccatggcg---ccctttggtgctggtttacggagagaccatacgaagtgggccccactattctcaatagcat |
113 |
Q |
| |
|
|||| ||||| ||||||||| |||||| |||||||| ||||| ||| |||||||| |||||||||| ||| ||| | ||||||| |||||| |||| |
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|
| T |
39461179 |
tcagtaagagagtaatcagagggtgcaaccatggcgacacccttcggtttgggtttacgaagagaccatatgaaatggacgccactatcctcaatggcat |
39461080 |
T |
|
| Q |
114 |
gtgcgatctccttaacctgatcctcatcgaaacaacccctgctcccaaagcagaggaaaactacagaagaaagaggttgatcatcaagccagttgatgat |
213 |
Q |
| |
|
||||||||||||||| ||||||||||||||| |||||| |||||||||||||||||||||| || ||||||||||||||||||||||| |||||||| |
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|
| T |
39461079 |
gtgcgatctccttaatctgatcctcatcgaaggtacccctagtcccaaagcagaggaaaactacggaggaaagaggttgatcatcaagccacttgatgat |
39460980 |
T |
|
| Q |
214 |
atca |
217 |
Q |
| |
|
|||| |
|
|
| T |
39460979 |
atca |
39460976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 16 - 217
Target Start/End: Complemental strand, 39484190 - 39483989
Alignment:
| Q |
16 |
atcagaaagagtgtaatcagaaggtgcagccatggcgccctttggtgctggtttacggagagaccatacgaagtgggccccactattctcaatagcatgt |
115 |
Q |
| |
|
|||| |||||| ||||||||| ||||||||||||| ||||||| | |||||||| |||||||| |||||| | |||||||||||||||| | ||||| |
|
|
| T |
39484190 |
atcataaagagagtaatcagagggtgcagccatggtgccctttactagaggtttacgcagagaccacacgaagcgtgccccactattctcaacaacatgt |
39484091 |
T |
|
| Q |
116 |
gcgatctccttaacctgatcctcatcgaaacaacccctgctcccaaagcagaggaaaactacagaagaaagaggttgatcatcaagccagttgatgatat |
215 |
Q |
| |
|
|||||||||||||||||||| ||||| ||| ||||||| ||||||||||||||||||||||| || ||| ||||||||| || |||||| || || |||| |
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|
| T |
39484090 |
gcgatctccttaacctgatcttcatcaaaataacccctactcccaaagcagaggaaaactacggaggaaggaggttgattatgaagccacttcattatat |
39483991 |
T |
|
| Q |
216 |
ca |
217 |
Q |
| |
|
|| |
|
|
| T |
39483990 |
ca |
39483989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 16 - 209
Target Start/End: Original strand, 39457541 - 39457734
Alignment:
| Q |
16 |
atcagaaagagtgtaatcagaaggtgcagccatggcgccctttggtgctggtttacggagagaccatacgaagtgggccccactattctcaatagcatgt |
115 |
Q |
| |
|
||||||||||||||||||||| || ||| ||||| | |||| |||| ||||||||| |||||||| || || || ||||| ||||||| | |||| | |
|
|
| T |
39457541 |
atcagaaagagtgtaatcagatggcgcattcatggtgtccttcggtggtggtttacgtagagaccacacaaatcggaccccagtattctctacagcaagg |
39457640 |
T |
|
| Q |
116 |
gcgatctccttaacctgatcctcatcgaaacaacccctgctcccaaagcagaggaaaactacagaagaaagaggttgatcatcaagccagttga |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||| | ||||||||||| ||||||||||||||| | || ||| ||||||||||||||||||| |||| |
|
|
| T |
39457641 |
gcgatctccttaacctgatcctcatcgaaaaaccccctgctcccgaagcagaggaaaacttccgaggaaggaggttgatcatcaagccacttga |
39457734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 16 - 209
Target Start/End: Original strand, 39470006 - 39470198
Alignment:
| Q |
16 |
atcagaaagagtgtaatcagaaggtgcagccatggcgccctttggtgctggtttacggagagaccatacgaagtgggccccactattctcaatagcatgt |
115 |
Q |
| |
|
||||||||||| ||||||||| || ||| |||||| |||||| |||| ||||||||| |||||||| || | || ||||| ||||||| | |||| || |
|
|
| T |
39470006 |
atcagaaagagggtaatcagatggcgcaaccatggtgcccttaggtggtggtttacgtagagaccacacaatacggaccccagtattctctacagcaagt |
39470105 |
T |
|
| Q |
116 |
gcgatctccttaacctgatcctcatcgaaacaacccctgctcccaaagcagaggaaaactacagaagaaagaggttgatcatcaagccagttga |
209 |
Q |
| |
|
|||||| ||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||| || ||| |||| |||||||||||||| |||| |
|
|
| T |
39470106 |
gcgatccccttaacctgatcctcatcgaaaaaaccc-tgctcccgaagcagaggaaaactaccgaggaaggaggctgatcatcaagccacttga |
39470198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 16 - 213
Target Start/End: Complemental strand, 39472957 - 39472760
Alignment:
| Q |
16 |
atcagaaagagtgtaatcagaaggtgcagccatggcgccctttggtgctggtttacggagagaccatacgaagtgggccccactattctcaatagcatgt |
115 |
Q |
| |
|
|||| |||||| ||||||||| || | ||||||| ||||| |||| |||||||| |||||||||| ||| |||||||||||||||||||||| | |
|
|
| T |
39472957 |
atcaaaaagagggtaatcagagggcgaggccatggtgccctccggtggaggtttacgaagagaccatatgaaccgggccccactattctcaatagcgcat |
39472858 |
T |
|
| Q |
116 |
gcgatctccttaacctgatcctcatcgaaacaacccctgctcccaaagcagaggaaaactacagaagaaagaggttgatcatcaagccagttgatgat |
213 |
Q |
| |
|
|| |||| | ||||||||||||| |||||| ||||| | || || ||||||||||||||||| || || |||||||||||||||||| |||||||| |
|
|
| T |
39472857 |
gcaatctgcgtaacctgatcctcgtcgaaagaacccatacttccgaagcagaggaaaactactgaggatgcaggttgatcatcaagccacttgatgat |
39472760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 16 - 204
Target Start/End: Original strand, 43311776 - 43311964
Alignment:
| Q |
16 |
atcagaaagagtgtaatcagaaggtgcagccatggcgccctttggtgctggtttacggagagaccatacgaagtgggccccactattctcaatagcatgt |
115 |
Q |
| |
|
||||||||||| ||||||||| | || |||||| ||||| |||| ||||| || |||||||| | |||| | ||| |||| ||||||||||||| |
|
|
| T |
43311776 |
atcagaaagagagtaatcagatgtctcacccatggttcccttcggtgggggttttcgcagagaccacaggaagcgagcctcacttttctcaatagcatac |
43311875 |
T |
|
| Q |
116 |
gcgatctccttaacctgatcctcatcgaaacaacccctgctcccaaagcagaggaaaactacagaagaaagaggttgatcatcaagcca |
204 |
Q |
| |
|
|| |||||| ||| ||||||||||||||| ||||| ||||||||||||| || ||||||| || ||||||||||| ||||| ||||| |
|
|
| T |
43311876 |
gcaatctccctaatttgatcctcatcgaaagaacccttgctcccaaagcaaagataaactacggacgaaagaggttggtcatcgagcca |
43311964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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