View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18982_low_84 (Length: 242)
Name: NF18982_low_84
Description: NF18982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18982_low_84 |
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Alignment Details
Target: chr3 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 18 - 223
Target Start/End: Complemental strand, 45656945 - 45656740
Alignment:
| Q |
18 |
atatgtatgtaagcccaatattcaattttaatgctgccatagtggcactatagcaccttagcatagcggaatttgaacaaaagttannnnnnnactatcc |
117 |
Q |
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| T |
45656945 |
atatgtatgtaagcccaatattcaatttgaatgctgccatagtggcactatagcaccgtagcatagcagaatttgaacaaaagttatttttttactatcc |
45656846 |
T |
|
| Q |
118 |
gctatttaccaacattgttgattgtttttcacgtaattttctgtgtcaaactcggttagatatttagttatagaatgatttgatagaattggtttaaggt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45656845 |
gctatttaccaacattgttgattgtttttcacgtaattttctgtgtcaaactcggttagatatttagttatagaatgatttgatagaattggtttaaggt |
45656746 |
T |
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| Q |
218 |
agttag |
223 |
Q |
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|||||| |
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| T |
45656745 |
agttag |
45656740 |
T |
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