View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18982_low_9 (Length: 615)

Name: NF18982_low_9
Description: NF18982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18982_low_9
NF18982_low_9
[»] chr4 (22 HSPs)
chr4 (8-597)||(36937482-36938068)
chr4 (35-217)||(36958241-36958422)
chr4 (35-145)||(36948178-36948288)
chr4 (501-595)||(27918405-27918498)
chr4 (501-595)||(42051181-42051274)
chr4 (501-589)||(22019388-22019475)
chr4 (526-595)||(1961633-1961702)
chr4 (527-595)||(1008965-1009033)
chr4 (526-592)||(36989856-36989922)
chr4 (501-594)||(24940630-24940721)
chr4 (507-592)||(54997775-54997859)
chr4 (507-595)||(14138980-14139067)
chr4 (529-593)||(41459958-41460022)
chr4 (501-592)||(50297709-50297799)
chr4 (524-594)||(9791318-9791388)
chr4 (537-595)||(34936421-34936479)
chr4 (542-595)||(39260036-39260089)
chr4 (526-595)||(45249959-45250028)
chr4 (526-595)||(54719691-54719760)
chr4 (543-595)||(564180-564232)
chr4 (527-595)||(40311747-40311815)
chr4 (527-595)||(40321823-40321891)
[»] chr7 (12 HSPs)
chr7 (526-595)||(28337227-28337296)
chr7 (520-593)||(7457982-7458055)
chr7 (501-595)||(32786789-32786882)
chr7 (529-595)||(31054195-31054265)
chr7 (528-595)||(34964029-34964096)
chr7 (501-592)||(47390588-47390678)
chr7 (526-592)||(2033633-2033699)
chr7 (538-592)||(39837473-39837527)
chr7 (541-595)||(26081042-26081096)
chr7 (541-595)||(26104829-26104883)
chr7 (526-595)||(32546730-32546799)
chr7 (510-590)||(5528276-5528355)
[»] chr2 (18 HSPs)
chr2 (524-595)||(44068851-44068922)
chr2 (526-597)||(32294577-32294648)
chr2 (501-594)||(25626319-25626411)
chr2 (490-595)||(29877084-29877188)
chr2 (501-592)||(37230560-37230650)
chr2 (541-594)||(14275793-14275846)
chr2 (541-592)||(20061127-20061178)
chr2 (526-595)||(30549082-30549151)
chr2 (526-591)||(37775680-37775744)
chr2 (526-595)||(39420262-39420331)
chr2 (507-595)||(409903-409991)
chr2 (543-595)||(41890055-41890107)
chr2 (543-595)||(43451756-43451808)
chr2 (505-595)||(2641449-2641538)
chr2 (541-595)||(7743794-7743848)
chr2 (563-597)||(15079888-15079922)
chr2 (501-595)||(25626472-25626565)
chr2 (556-592)||(36528400-36528436)
[»] chr3 (18 HSPs)
chr3 (526-595)||(4539879-4539948)
chr3 (527-592)||(37919182-37919247)
chr3 (525-594)||(53741346-53741415)
chr3 (524-592)||(48192639-48192707)
chr3 (507-592)||(25134160-25134243)
chr3 (509-589)||(25096289-25096368)
chr3 (524-592)||(47499444-47499512)
chr3 (525-595)||(13637912-13637982)
chr3 (541-595)||(25102050-25102104)
chr3 (541-595)||(39430298-39430352)
chr3 (529-595)||(42891044-42891109)
chr3 (529-595)||(54787868-54787934)
chr3 (526-595)||(55158498-55158565)
chr3 (524-595)||(47849993-47850064)
chr3 (546-594)||(17587099-17587147)
chr3 (543-595)||(28193619-28193671)
chr3 (507-595)||(51325541-51325628)
chr3 (521-597)||(52859586-52859662)
[»] chr6 (8 HSPs)
chr6 (541-595)||(29286007-29286061)
chr6 (521-595)||(30249162-30249236)
chr6 (529-595)||(6469619-6469685)
chr6 (543-592)||(11659295-11659344)
chr6 (526-595)||(2831381-2831450)
chr6 (541-597)||(1065626-1065682)
chr6 (543-595)||(2614370-2614422)
chr6 (524-597)||(3787449-3787522)
[»] chr1 (14 HSPs)
chr1 (501-593)||(29033009-29033100)
chr1 (490-595)||(15281383-15281487)
chr1 (520-597)||(33254565-33254642)
chr1 (520-597)||(33274737-33274814)
chr1 (527-595)||(31635465-31635533)
chr1 (524-595)||(37316643-37316714)
chr1 (521-595)||(28490568-28490641)
chr1 (526-595)||(11018011-11018080)
chr1 (526-595)||(1035591-1035660)
chr1 (541-592)||(42066662-42066713)
chr1 (532-592)||(31262587-31262648)
chr1 (554-595)||(50014660-50014701)
chr1 (543-595)||(4084738-4084790)
chr1 (507-595)||(41884688-41884775)
[»] scaffold0116 (2 HSPs)
scaffold0116 (524-595)||(3031-3102)
scaffold0116 (524-595)||(6072-6143)
[»] chr5 (13 HSPs)
chr5 (526-597)||(10523678-10523749)
chr5 (526-597)||(41144648-41144719)
chr5 (541-595)||(16627328-16627382)
chr5 (526-595)||(554357-554426)
chr5 (521-590)||(8222097-8222166)
chr5 (521-592)||(26105027-26105098)
chr5 (526-595)||(967586-967656)
chr5 (526-588)||(12000075-12000137)
chr5 (530-592)||(24519472-24519534)
chr5 (550-595)||(40044870-40044915)
chr5 (526-589)||(2987480-2987542)
chr5 (524-594)||(43340300-43340370)
chr5 (524-576)||(40845811-40845863)
[»] scaffold0482 (1 HSPs)
scaffold0482 (541-588)||(585-632)
[»] chr8 (19 HSPs)
chr8 (541-588)||(7774634-7774681)
chr8 (541-588)||(7791281-7791328)
chr8 (541-588)||(7811865-7811912)
chr8 (527-594)||(21574304-21574371)
chr8 (526-595)||(41602428-41602497)
chr8 (507-595)||(31592415-31592502)
chr8 (527-595)||(40505323-40505391)
chr8 (501-592)||(31313306-31313396)
chr8 (524-587)||(45244700-45244763)
chr8 (501-591)||(6530305-6530394)
chr8 (501-595)||(39699635-39699728)
chr8 (526-595)||(8114373-8114442)
chr8 (541-590)||(8769072-8769121)
chr8 (526-595)||(8867205-8867274)
chr8 (530-595)||(12703481-12703546)
chr8 (543-595)||(21372483-21372535)
chr8 (501-588)||(5493362-5493448)
chr8 (544-597)||(41720154-41720207)
chr8 (538-595)||(42685744-42685801)
[»] scaffold0542 (1 HSPs)
scaffold0542 (501-589)||(4514-4601)
[»] scaffold0181 (1 HSPs)
scaffold0181 (532-594)||(10815-10877)


Alignment Details
Target: chr4 (Bit Score: 513; Significance: 0; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 513; E-Value: 0
Query Start/End: Original strand, 8 - 597
Target Start/End: Complemental strand, 36938068 - 36937482
Alignment:
Q  8 gacatcatctgaaaattttaaagcatgtgttttgtcactactaaggttgtcatagttgaaagttaatggagctgcatgagatgttacaagaagcgagagt 107  Q
    ||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36938068 gacatcacctgaaaaatttaaagcatgtgttttgtcactactaaggttgtcatagttgaaagttaatggagctgcatgagatgttacaagaagcgagagt 36937969  T
Q  108 gatagtgttacatgaaagaaagcaagaagatgaggtttcatatagttgttgcaagacgatgccataactgaaaattttatgttgtggaaataatggaacc 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||    
T  36937968 gatagtgttacatgaaagaaagcaagaagatgaggtttcatatagttg---caagacgatgccataactgaaaattttatgttgtggaaataatggaacc 36937872  T
Q  208 atacaaaatggcgtggcatggagtggttatgtgtatgtagtagatattagttaattactaatagggaagattacttgcttgtgttgggtggtggaattaa 307  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  36937871 atacaaaatggcatggcatggagtggttatgtgtatgtagtagatattagttaat-actaatagggaagattacttgcttgtgttgggtggtggaattaa 36937773  T
Q  308 tcaatgagtttacctttgaattattatggtaacgggtcaatccgtttgagtacgatgtttcaatgaatccgtccacgtta-tgtaaaaatgatccacgtt 406  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  36937772 tcaatgagtttacctttgaattagtatggtaacgggtcaatccgtttgagtacgatgtttcaatgaatccgtccacgttaatgtaaaaatgatccacgtt 36937673  T
Q  407 ttcaaaattcatttgcttcattttatacaacacgacctgaacgataacttgttcaaaatacatgtcggataatttgtttatacttttattgatgaatgcc 506  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||     
T  36937672 ttcaaaattcatttgcttcattttatacaacacgacctgaatgataacttgttcaaaatacatgtcggataatttgtttatatttttattgatgaatgct 36937573  T
Q  507 aacttgtgccttcaaatgacacatgttaacaaattcattatagaaatatatgtataaaaaatcgtgcattcaacttcttaaaagttaaact 597  Q
    ||  |||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  36937572 aatctgtgccctcaaatgacacatgttaacaaactcattatagaaatatatgtataaaaaaacgtgcattcaacttcttaaaagttaaact 36937482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 35 - 217
Target Start/End: Complemental strand, 36958422 - 36958241
Alignment:
Q  35 tgttttgtcactactaaggttgtcatagttgaaagttaatggagctgcatgagatgttacaagaagcgagagtgatagtgttacatgaaagaaagcaaga 134  Q
    ||||||||||| || ||| |  ||||||||||| | ||||||||||||| ||||||||||||||||| ||| || || ||| ||||||||||||||||||    
T  36958422 tgttttgtcaccaccaagttgttcatagttgaatgataatggagctgcacgagatgttacaagaagcaagaatgttaatgtaacatgaaagaaagcaaga 36958323  T
Q  135 agatgaggtttcatatagttgttgcaagacgatgccataactgaaaattttatgtt--gtggaaataatggaaccatacaaaatg 217  Q
    ||||||||||   | |  |||| |||||| |||||||||| || |||||| || ||  |||||||||||||||  ||||||||||    
T  36958322 agatgaggtt---tgtgattgtagcaagatgatgccataattgtaaatttgatattgggtggaaataatggaattatacaaaatg 36958241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 35 - 145
Target Start/End: Complemental strand, 36948288 - 36948178
Alignment:
Q  35 tgttttgtcactactaaggttgtcatagttgaaagttaatggagctgcatgagatgttacaagaagcgagagtgatagtgttacatgaaagaaagcaaga 134  Q
    ||||||||||| || ||| |  ||||||||||| | ||||||||||||| ||||||||||||||||| ||| || || ||||||||||||||||||||||    
T  36948288 tgttttgtcaccaccaagttgttcatagttgaatgataatggagctgcacgagatgttacaagaagcaagaatgttaatgttacatgaaagaaagcaaga 36948189  T
Q  135 agatgaggttt 145  Q
    || ||||||||    
T  36948188 aggtgaggttt 36948178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 501 - 595
Target Start/End: Complemental strand, 27918498 - 27918405
Alignment:
Q  501 aatgccaacttgtgccttcaaatgacacatgttaacaaattcattatagaaatatatgtataaaaaatcgtgcattcaacttcttaaaagttaaa 595  Q
    ||||| |||||||||| ||||  ||||||||||||  || || |||||||||||||||||| |||| ||||||||| ||||||||||||||||||    
T  27918498 aatgctaacttgtgccctcaag-gacacatgttaaggaactcgttatagaaatatatgtatcaaaagtcgtgcattaaacttcttaaaagttaaa 27918405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 501 - 595
Target Start/End: Complemental strand, 42051274 - 42051181
Alignment:
Q  501 aatgccaacttgtgccttcaaatgacacatgttaacaaattcattatagaaatatatgtataaaaaatcgtgcattcaacttcttaaaagttaaa 595  Q
    ||||| |||||||||| ||||  ||||||| ||||  || |||||||| |||||||||||| |||| ||||||||||||||| ||||||||||||    
T  42051274 aatgctaacttgtgccatcaag-gacacatattaatgaactcattataaaaatatatgtatcaaaagtcgtgcattcaacttgttaaaagttaaa 42051181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 501 - 589
Target Start/End: Original strand, 22019388 - 22019475
Alignment:
Q  501 aatgccaacttgtgccttcaaatgacacatgttaacaaattcattatagaaatatatgtataaaaaatcgtgcattcaacttcttaaaa 589  Q
    ||||| |||||||||| ||||  ||||||||||||  || |||||||||||||||||| || ||||||||| |||||||||||| ||||    
T  22019388 aatgctaacttgtgccctcaag-gacacatgttaaagaactcattatagaaatatatgcattaaaaatcgtacattcaacttctaaaaa 22019475  T

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Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 526 - 595
Target Start/End: Original strand, 1961633 - 1961702
Alignment:
Q  526 cacatgttaacaaattcattatagaaatatatgtataaaaaatcgtgcattcaacttcttaaaagttaaa 595  Q
    |||||||||| ||| | ||||||||||||||  ||| |||| ||||||||||||||||| ||||||||||    
T  1961633 cacatgttaaaaaacttattatagaaatataaatatcaaaagtcgtgcattcaacttctaaaaagttaaa 1961702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 527 - 595
Target Start/End: Complemental strand, 1009033 - 1008965
Alignment:
Q  527 acatgttaacaaattcattatagaaatatatgtataaaaaatcgtgcattcaacttcttaaaagttaaa 595  Q
    ||||||||| ||||| ||| ||||||||||||||| |||| || | ||||||||| |||||||||||||    
T  1009033 acatgttaagaaatttattgtagaaatatatgtatcaaaagtcatacattcaactacttaaaagttaaa 1008965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 526 - 592
Target Start/End: Original strand, 36989856 - 36989922
Alignment:
Q  526 cacatgttaacaaattcattatagaaatatatgtataaaaaatcgtgcattcaacttcttaaaagtt 592  Q
    ||||| |||| ||| |||||||| |||||||  ||| |||| |||||||||||||||||||||||||    
T  36989856 cacatattaagaaactcattataaaaatatacatattaaaagtcgtgcattcaacttcttaaaagtt 36989922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 501 - 594
Target Start/End: Original strand, 24940630 - 24940721
Alignment:
Q  501 aatgccaacttgtgccttcaaatgacacatgttaacaaattcattatagaaatatatgtataaaaaatcgtgcattcaacttcttaaaagttaa 594  Q
    ||||| ||||||| |||||||  | |||||||||| || || |||| |||||||||   ||||||| |||||||||||||||||||||||||||    
T  24940630 aatgctaacttgtaccttcaaggg-cacatgttaaaaactt-attaaagaaatataaacataaaaagtcgtgcattcaacttcttaaaagttaa 24940721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 507 - 592
Target Start/End: Complemental strand, 54997859 - 54997775
Alignment:
Q  507 aacttgtgccttcaaatgacacatgttaacaaattcattatagaaatatatgtataaaaaatcgtgcattcaacttcttaaaagtt 592  Q
    |||||||||| |||| || |||||||||| | | |||||||||||||| |  ||| ||||  ||||||||||||||||||||||||    
T  54997859 aacttgtgccatcaa-tggcacatgttaagatactcattatagaaataaacatatcaaaatgcgtgcattcaacttcttaaaagtt 54997775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 507 - 595
Target Start/End: Original strand, 14138980 - 14139067
Alignment:
Q  507 aacttgtgccttcaaatgacacatgttaacaaattcattatagaaatatatgtataaaaaatcgtgcattcaacttcttaaaagttaaa 595  Q
    |||||||||||||||  | ||||||||||  ||  | ||||||||||||| |||| |||||||||| | |||| |||||||||||||||    
T  14138980 aacttgtgccttcaaggg-cacatgttaatgaaccctttatagaaatatacgtatcaaaaatcgtgtagtcaatttcttaaaagttaaa 14139067  T

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Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 529 - 593
Target Start/End: Complemental strand, 41460022 - 41459958
Alignment:
Q  529 atgttaacaaattcattatagaaatatatgtataaaaaatcgtgcattcaacttcttaaaagtta 593  Q
    ||||||| ||| | |||||||||||||| |||| |||||||||| |||  |||||||||||||||    
T  41460022 atgttaagaaacttattatagaaatatacgtattaaaaatcgtgtatttgacttcttaaaagtta 41459958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 501 - 592
Target Start/End: Complemental strand, 50297799 - 50297709
Alignment:
Q  501 aatgccaacttgtgccttcaaatgacacatgttaacaaattcattatagaaatatatgtataaaaaatcgtgcattcaacttcttaaaagtt 592  Q
    ||||| |||||||||| ||||  | |||||||||| | | |||||||||||||| |  ||| ||||  ||||||||||||||||||||||||    
T  50297799 aatgctaacttgtgccctcaaggg-cacatgttaagatactcattatagaaatacacatatcaaaaggcgtgcattcaacttcttaaaagtt 50297709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 524 - 594
Target Start/End: Complemental strand, 9791388 - 9791318
Alignment:
Q  524 gacacatgttaacaaattcattatagaaatatatgtataaaaaatcgtgcattcaacttcttaaaagttaa 594  Q
    ||||||||||||  |||||||||||||||||||  ||| | |||||||| | | ||||| |||||||||||    
T  9791388 gacacatgttaatgaattcattatagaaatatacatatcagaaatcgtgtagtgaactttttaaaagttaa 9791318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 537 - 595
Target Start/End: Complemental strand, 34936479 - 34936421
Alignment:
Q  537 aaattcattatagaaatatatgtataaaaaatcgtgcattcaacttcttaaaagttaaa 595  Q
    |||||||| ||||||||||||||||  ||| |||| |||| ||||| ||||||||||||    
T  34936479 aaattcatgatagaaatatatgtatcgaaagtcgtacatttaactttttaaaagttaaa 34936421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 542 - 595
Target Start/End: Original strand, 39260036 - 39260089
Alignment:
Q  542 cattatagaaatatatgtataaaaaatcgtgcattcaacttcttaaaagttaaa 595  Q
    ||||||| ||||||| | ||||||| | |||||||||||||||||||| |||||    
T  39260036 cattataaaaatatacgcataaaaagttgtgcattcaacttcttaaaaattaaa 39260089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 526 - 595
Target Start/End: Complemental strand, 45250028 - 45249959
Alignment:
Q  526 cacatgttaacaaattcattatagaaatatatgtataaaaaatcgtgcattcaacttcttaaaagttaaa 595  Q
    |||||| ||| |||||  ||||||||||||   ||| |||| |||||||||||||||||||||| |||||    
T  45250028 cacatgctaagaaattttttatagaaatattcatatcaaaagtcgtgcattcaacttcttaaaatttaaa 45249959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 526 - 595
Target Start/End: Complemental strand, 54719760 - 54719691
Alignment:
Q  526 cacatgttaacaaattcattatagaaatatatgtataaaaaatcgtgcattcaacttcttaaaagttaaa 595  Q
    ||||||||||  |||| ||||||||||||||  ||| |||| ||||  | ||||||||||||||||||||    
T  54719760 cacatgttaaggaatttattatagaaatatacttattaaaagtcgtatagtcaacttcttaaaagttaaa 54719691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 543 - 595
Target Start/End: Complemental strand, 564232 - 564180
Alignment:
Q  543 attatagaaatatatgtataaaaaatcgtgcattcaacttcttaaaagttaaa 595  Q
    |||||||||||||| |||| |||||| |||||||  ||||||||||| |||||    
T  564232 attatagaaatatacgtattaaaaattgtgcatttgacttcttaaaaattaaa 564180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 527 - 595
Target Start/End: Complemental strand, 40311815 - 40311747
Alignment:
Q  527 acatgttaacaaattcattatagaaatatatgtataaaaaatcgtgcattcaacttcttaaaagttaaa 595  Q
    ||||||||| ||||||||||||  |||||| |||| |||| ||||| | |||| ||||||||| |||||    
T  40311815 acatgttaagaaattcattataataatatacgtatcaaaagtcgtgtagtcaatttcttaaaaattaaa 40311747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 527 - 595
Target Start/End: Complemental strand, 40321891 - 40321823
Alignment:
Q  527 acatgttaacaaattcattatagaaatatatgtataaaaaatcgtgcattcaacttcttaaaagttaaa 595  Q
    ||||||||| ||||||||||||  |||||| |||| |||| ||||| | |||| ||||||||| |||||    
T  40321891 acatgttaagaaattcattataataatatacgtatcaaaagtcgtgtagtcaatttcttaaaaattaaa 40321823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 4e-24; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 526 - 595
Target Start/End: Original strand, 28337227 - 28337296
Alignment:
Q  526 cacatgttaacaaattcattatagaaatatatgtataaaaaatcgtgcattcaacttcttaaaagttaaa 595  Q
    |||||||||| ||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  28337227 cacatgttaagaaactcattatagaaatatatgtataaaaaatcgtgcaatcaacttcttaaaagttaaa 28337296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 520 - 593
Target Start/End: Complemental strand, 7458055 - 7457982
Alignment:
Q  520 aaatgacacatgttaacaaattcattatagaaatatatgtataaaaaatcgtgcattcaacttcttaaaagtta 593  Q
    |||||||||||||||| ||||||||||||||||||||||||| |||||||||| ||||||  ||||| ||||||    
T  7458055 aaatgacacatgttaataaattcattatagaaatatatgtatcaaaaatcgtgtattcaatatcttacaagtta 7457982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 501 - 595
Target Start/End: Original strand, 32786789 - 32786882
Alignment:
Q  501 aatgccaacttgtgccttcaaatgacacatgttaacaaattcattatagaaatatatgtataaaaaatcgtgcattcaacttcttaaaagttaaa 595  Q
    ||||| |||||||||| ||||  | ||||||||||  || |||||||| ||||||| |||| |||| ||||||||||||||||||||||||||||    
T  32786789 aatgctaacttgtgccctcaaggg-cacatgttaaggaactcattatataaatatacgtatcaaaagtcgtgcattcaacttcttaaaagttaaa 32786882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 529 - 595
Target Start/End: Original strand, 31054195 - 31054265
Alignment:
Q  529 atgttaacaaattcattatagaaatatatgtata----aaaaatcgtgcattcaacttcttaaaagttaaa 595  Q
    ||||||| |||||||||||||||||||||||||     |||| |||| |||||||||||||||||||||||    
T  31054195 atgttaagaaattcattatagaaatatatgtatgtattaaaagtcgtacattcaacttcttaaaagttaaa 31054265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 528 - 595
Target Start/End: Complemental strand, 34964096 - 34964029
Alignment:
Q  528 catgttaacaaattcattatagaaatatatgtataaaaaatcgtgcattcaacttcttaaaagttaaa 595  Q
    ||||||||  |||||||||||||||||||| ||| |||| ||||||| | ||||||| ||||||||||    
T  34964096 catgttaaagaattcattatagaaatatatttatcaaaagtcgtgcagttaacttctaaaaagttaaa 34964029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 501 - 592
Target Start/End: Complemental strand, 47390678 - 47390588
Alignment:
Q  501 aatgccaacttgtgccttcaaatgacacatgttaacaaattcattatagaaatatatgtataaaaaatcgtgcattcaacttcttaaaagtt 592  Q
    ||||||||||| |||||||||  |||| ||||||| ||| |||||||  ||||||| |||| |||| |||| ||||||||||||| ||||||    
T  47390678 aatgccaacttatgccttcaag-gacatatgttaaaaaactcattatttaaatatacgtattaaaagtcgtacattcaacttcttgaaagtt 47390588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 526 - 592
Target Start/End: Original strand, 2033633 - 2033699
Alignment:
Q  526 cacatgttaacaaattcattatagaaatatatgtataaaaaatcgtgcattcaacttcttaaaagtt 592  Q
    |||||||||| ||  | |||||||||||| || |||||||||| ||||||||||||| |||||||||    
T  2033633 cacatgttaagaaccttattatagaaatacatttataaaaaattgtgcattcaactttttaaaagtt 2033699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 538 - 592
Target Start/End: Complemental strand, 39837527 - 39837473
Alignment:
Q  538 aattcattatagaaatatatgtataaaaaatcgtgcattcaacttcttaaaagtt 592  Q
    |||| |||||||||||| | |||| |||| |||||||||||||||||||||||||    
T  39837527 aattaattatagaaatacacgtatcaaaagtcgtgcattcaacttcttaaaagtt 39837473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 541 - 595
Target Start/End: Complemental strand, 26081096 - 26081042
Alignment:
Q  541 tcattatagaaatatatgtataaaaaatcgtgcattcaacttcttaaaagttaaa 595  Q
    ||||||||||||||||  ||| |||||| ||||  ||||||||||||||||||||    
T  26081096 tcattatagaaatatacatattaaaaattgtgccgtcaacttcttaaaagttaaa 26081042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 541 - 595
Target Start/End: Complemental strand, 26104883 - 26104829
Alignment:
Q  541 tcattatagaaatatatgtataaaaaatcgtgcattcaacttcttaaaagttaaa 595  Q
    ||||||||||||||||  ||| |||||| ||||  ||||||||||||||||||||    
T  26104883 tcattatagaaatatacatattaaaaattgtgccgtcaacttcttaaaagttaaa 26104829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 526 - 595
Target Start/End: Original strand, 32546730 - 32546799
Alignment:
Q  526 cacatgttaacaaattcattatagaaatatatgtataaaaaatcgtgcattcaacttcttaaaagttaaa 595  Q
    |||| ||||| ||| || ||||||||||||| | || |||| ||| ||| ||||||||||||||||||||    
T  32546730 cacacgttaaaaaactccttatagaaatatacgcatcaaaagtcgggcaatcaacttcttaaaagttaaa 32546799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 510 - 590
Target Start/End: Original strand, 5528276 - 5528355
Alignment:
Q  510 ttgtgccttcaaatgacacatgttaacaaattcattatagaaatatatgtataaaaaatcgtgcattcaacttcttaaaag 590  Q
    ||||||||||||| || ||||||||| |   |||||||| ||||| |  ||| ||||||||| ||||||||||||||||||    
T  5528276 ttgtgccttcaaa-gatacatgttaagattctcattataaaaatacacatattaaaaatcgtacattcaacttcttaaaag 5528355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 2e-20; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 524 - 595
Target Start/End: Complemental strand, 44068922 - 44068851
Alignment:
Q  524 gacacatgttaacaaattcattatagaaatatatgtataaaaaatcgtgcattcaacttcttaaaagttaaa 595  Q
    ||||||||||||  |||||||||||||||||||||||| |||| ||||||| ||||||||||||||||||||    
T  44068922 gacacatgttaaggaattcattatagaaatatatgtatcaaaagtcgtgcaatcaacttcttaaaagttaaa 44068851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 526 - 597
Target Start/End: Complemental strand, 32294648 - 32294577
Alignment:
Q  526 cacatgttaacaaattcattatagaaatatatgtataaaaaatcgtgcattcaacttcttaaaagttaaact 597  Q
    ||||||||||  || ||||||||||||||||||||| |||| ||||||||||||||||| |||||| |||||    
T  32294648 cacatgttaaggaactcattatagaaatatatgtattaaaagtcgtgcattcaacttctgaaaagtcaaact 32294577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 501 - 594
Target Start/End: Complemental strand, 25626411 - 25626319
Alignment:
Q  501 aatgccaacttgtgccttcaaatgacacatgttaacaaattcattatagaaatatatgtataaaaaatcgtgcattcaacttcttaaaagttaa 594  Q
    ||||| |||||||||| |||| | |||||||||||  || | |||||||||||||| |||| |||| |||| ||||||||||||||||||||||    
T  25626411 aatgctaacttgtgccctcaa-taacacatgttaaggaacttattatagaaatatacgtatcaaaagtcgtacattcaacttcttaaaagttaa 25626319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 490 - 595
Target Start/End: Complemental strand, 29877188 - 29877084
Alignment:
Q  490 ttttattgatgaatgccaacttgtgccttcaaatgacacatgttaacaaattcattatagaaatatatgtataaaaaatcgtgcattcaacttcttaaaa 589  Q
    |||| |||||||||   |||||||||||||||| ||||||||||||  || |||||||| ||||| |||||| |||| ||||||| |||| |||| ||||    
T  29877188 tttttttgatgaatattaacttgtgccttcaaa-gacacatgttaaagaactcattataaaaataaatgtattaaaagtcgtgcagtcaatttctcaaaa 29877090  T
Q  590 gttaaa 595  Q
    ||||||    
T  29877089 gttaaa 29877084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 501 - 592
Target Start/End: Original strand, 37230560 - 37230650
Alignment:
Q  501 aatgccaacttgtgccttcaaatgacacatgttaacaaattcattatagaaatatatgtataaaaaatcgtgcattcaacttcttaaaagtt 592  Q
    ||||| |||||||||||||||  ||||||||| ||  || |||||||| |||||||||||| |||| || ||||||||| ||||||||||||    
T  37230560 aatgctaacttgtgccttcaag-gacacatgtaaaggaaatcattatataaatatatgtatcaaaagtcatgcattcaatttcttaaaagtt 37230650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 541 - 594
Target Start/End: Original strand, 14275793 - 14275846
Alignment:
Q  541 tcattatagaaatatatgtataaaaaatcgtgcattcaacttcttaaaagttaa 594  Q
    |||||||||||||||| |||| |||| || ||||||||||||||||||||||||    
T  14275793 tcattatagaaatatacgtatcaaaagtcatgcattcaacttcttaaaagttaa 14275846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 541 - 592
Target Start/End: Complemental strand, 20061178 - 20061127
Alignment:
Q  541 tcattatagaaatatatgtataaaaaatcgtgcattcaacttcttaaaagtt 592  Q
    |||||||||||||||| |||| |||| | |||||||||||||||||||||||    
T  20061178 tcattatagaaatatacgtatcaaaagttgtgcattcaacttcttaaaagtt 20061127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 526 - 595
Target Start/End: Original strand, 30549082 - 30549151
Alignment:
Q  526 cacatgttaacaaattcattatagaaatatatgtataaaaaatcgtgcattcaacttcttaaaagttaaa 595  Q
    ||||||||||  || || ||||||||||||| |||| |||| ||||||| ||||||||||||| ||||||    
T  30549082 cacatgttaaggaactctttatagaaatatacgtatcaaaagtcgtgcaatcaacttcttaaacgttaaa 30549151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 526 - 591
Target Start/End: Complemental strand, 37775744 - 37775680
Alignment:
Q  526 cacatgttaacaaattcattatagaaatatatgtataaaaaatcgtgcattcaacttcttaaaagt 591  Q
    |||||||||| ||||| |||||||||| |||  ||| ||||| |||||||||||||||||||||||    
T  37775744 cacatgttaagaaatttattatagaaa-atagctatcaaaaaccgtgcattcaacttcttaaaagt 37775680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 526 - 595
Target Start/End: Complemental strand, 39420331 - 39420262
Alignment:
Q  526 cacatgttaacaaattcattatagaaatatatgtataaaaaatcgtgcattcaacttcttaaaagttaaa 595  Q
    ||||||||||  || ||||||||||||||||  ||| |||  |||||||||||||||||| |||||||||    
T  39420331 cacatgttaaggaactcattatagaaatatacatattaaatgtcgtgcattcaacttcttgaaagttaaa 39420262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 507 - 595
Target Start/End: Original strand, 409903 - 409991
Alignment:
Q  507 aacttgtgccttcaaatgacacatgttaacaaattcattatagaaatatatgtataaaaaatcgtgcattcaacttcttaaaagttaaa 595  Q
    |||||||||||||||| | || |||||||  || || ||||||||||| |  ||| |||| ||||||| ||||||||| ||||||||||    
T  409903 aacttgtgccttcaaagggcatatgttaaggaactcgttatagaaataaacttatcaaaagtcgtgcagtcaacttctcaaaagttaaa 409991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 543 - 595
Target Start/End: Complemental strand, 41890107 - 41890055
Alignment:
Q  543 attatagaaatatatgtataaaaaatcgtgcattcaacttcttaaaagttaaa 595  Q
    |||||||||||||| | || |||| |||||||||||||||||||||| |||||    
T  41890107 attatagaaatatacgcatcaaaagtcgtgcattcaacttcttaaaaattaaa 41890055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 543 - 595
Target Start/End: Original strand, 43451756 - 43451808
Alignment:
Q  543 attatagaaatatatgtataaaaaatcgtgcattcaacttcttaaaagttaaa 595  Q
    |||||| ||||| |||||| |||||||||| | ||||||||||||||||||||    
T  43451756 attatataaatacatgtattaaaaatcgtgtaatcaacttcttaaaagttaaa 43451808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 505 - 595
Target Start/End: Original strand, 2641449 - 2641538
Alignment:
Q  505 ccaacttgtgccttcaaatgacacatgttaacaaattcattatagaaatatatgtataaaaaatcgtgcattcaacttcttaaaagttaaa 595  Q
    |||||||||||| ||||  ||||||||||||  || |||||||| ||||||| |||| |||| ||||||| ||||| | |||||| |||||    
T  2641449 ccaacttgtgccctcaag-gacacatgttaaagaaatcattataaaaatatacgtatgaaaagtcgtgcagtcaacattttaaaaattaaa 2641538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 541 - 595
Target Start/End: Complemental strand, 7743848 - 7743794
Alignment:
Q  541 tcattatagaaatatatgtataaaaaatcgtgcattcaacttcttaaaagttaaa 595  Q
    |||||||||||||||||| ||  ||| ||||||| | ||||||||||||||||||    
T  7743848 tcattatagaaatatatgcatcgaaagtcgtgcagttaacttcttaaaagttaaa 7743794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 563 - 597
Target Start/End: Original strand, 15079888 - 15079922
Alignment:
Q  563 aaaaatcgtgcattcaacttcttaaaagttaaact 597  Q
    |||| ||||||||||||||||||||||||||||||    
T  15079888 aaaagtcgtgcattcaacttcttaaaagttaaact 15079922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 501 - 595
Target Start/End: Original strand, 25626472 - 25626565
Alignment:
Q  501 aatgccaacttgtgccttcaaatgacacatgttaacaaattcattatagaaatatatgtataaaaaatcgtgcattcaacttcttaaaagttaaa 595  Q
    ||||| |||||||||| ||||  | ||||||||||  || | ||||| |||||||| |||| |||| ||||| | ||||||||||||||||||||    
T  25626472 aatgctaacttgtgccctcaagag-cacatgttaaagaacttattattgaaatatacgtatcaaaagtcgtgtagtcaacttcttaaaagttaaa 25626565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 556 - 592
Target Start/End: Original strand, 36528400 - 36528436
Alignment:
Q  556 atgtataaaaaatcgtgcattcaacttcttaaaagtt 592  Q
    |||||| |||| |||||||||||||||||||||||||    
T  36528400 atgtatcaaaagtcgtgcattcaacttcttaaaagtt 36528436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 3e-19; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 526 - 595
Target Start/End: Original strand, 4539879 - 4539948
Alignment:
Q  526 cacatgttaacaaattcattatagaaatatatgtataaaaaatcgtgcattcaacttcttaaaagttaaa 595  Q
    |||||||||| ||| |||||||| |||||||||||| |||||||||||| ||||||||||||||||||||    
T  4539879 cacatgttaagaaactcattataaaaatatatgtattaaaaatcgtgcaatcaacttcttaaaagttaaa 4539948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 527 - 592
Target Start/End: Original strand, 37919182 - 37919247
Alignment:
Q  527 acatgttaacaaattcattatagaaatatatgtataaaaaatcgtgcattcaacttcttaaaagtt 592  Q
    ||||||||| ||| |||||||| ||||||| |||| |||||| |||||||||||||||||||||||    
T  37919182 acatgttaagaaactcattatataaatatacgtatcaaaaattgtgcattcaacttcttaaaagtt 37919247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 525 - 594
Target Start/End: Complemental strand, 53741415 - 53741346
Alignment:
Q  525 acacatgttaacaaattcattatagaaatatatgtataaaaaatcgtgcattcaacttcttaaaagttaa 594  Q
    |||||||||||  ||||||||||||||||||| |||| |||| || | ||||||||||||||||||||||    
T  53741415 acacatgttaaagaattcattatagaaatatacgtatcaaaagtcatacattcaacttcttaaaagttaa 53741346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 524 - 592
Target Start/End: Complemental strand, 48192707 - 48192639
Alignment:
Q  524 gacacatgttaacaaattcattatagaaatatatgtataaaaaatcgtgcattcaacttcttaaaagtt 592  Q
    |||||||||||| ||| | ||||||||||||||  ||| |||||||| |||||||||||||||||||||    
T  48192707 gacacatgttaagaaacttattatagaaatatacttattaaaaatcgcgcattcaacttcttaaaagtt 48192639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 507 - 592
Target Start/End: Complemental strand, 25134243 - 25134160
Alignment:
Q  507 aacttgtgccttcaaatgacacatgttaacaaattcattatagaaatatatgtataaaaaatcgtgcattcaacttcttaaaagtt 592  Q
    |||||||||  ||||| ||||||||||||  || ||||||||||||||||||||| |||| ||||||||| ||||||| |||||||    
T  25134243 aacttgtgctctcaaa-gacacatgttaaggaactcattatagaaatatatgtatcaaaagtcgtgcatt-aacttctaaaaagtt 25134160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 509 - 589
Target Start/End: Original strand, 25096289 - 25096368
Alignment:
Q  509 cttgtgccttcaaatgacacatgttaacaaattcattatagaaatatatgtataaaaaatcgtgcattcaacttcttaaaa 589  Q
    |||||||| ||||| | ||||||||||  || |||||||||||||||| | |||||||||| | |||||||||||||||||    
T  25096289 cttgtgccctcaaagg-cacatgttaaggaactcattatagaaatatacgcataaaaaatcatacattcaacttcttaaaa 25096368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 524 - 592
Target Start/End: Complemental strand, 47499512 - 47499444
Alignment:
Q  524 gacacatgttaacaaattcattatagaaatatatgtataaaaaatcgtgcattcaacttcttaaaagtt 592  Q
    |||||||||||| |||||||||||| ||||||| |||| |||| | ||| ||||||||| |||||||||    
T  47499512 gacacatgttaagaaattcattataaaaatatacgtattaaaagttgtgaattcaactttttaaaagtt 47499444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 525 - 595
Target Start/End: Original strand, 13637912 - 13637982
Alignment:
Q  525 acacatgttaacaaattcattatagaaatatatgtataaaaaatcgtgcattcaacttcttaaaagttaaa 595  Q
    ||||||||||| ||| |||||||| ||||||| | || |||| |||||||||||| ||||||||| |||||    
T  13637912 acacatgttaagaaagtcattataaaaatatacgcatcaaaattcgtgcattcaaattcttaaaaattaaa 13637982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 541 - 595
Target Start/End: Complemental strand, 25102104 - 25102050
Alignment:
Q  541 tcattatagaaatatatgtataaaaaatcgtgcattcaacttcttaaaagttaaa 595  Q
    ||||||||||||||||||||| |||||| ||| ||| ||||||| ||||||||||    
T  25102104 tcattatagaaatatatgtatcaaaaattgtgtatttaacttctcaaaagttaaa 25102050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 541 - 595
Target Start/End: Original strand, 39430298 - 39430352
Alignment:
Q  541 tcattatagaaatatatgtataaaaaatcgtgcattcaacttcttaaaagttaaa 595  Q
    |||||||||||| |||||||| |||| ||||||| ||||||||| ||||||||||    
T  39430298 tcattatagaaacatatgtatcaaaagtcgtgcagtcaacttctaaaaagttaaa 39430352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 529 - 595
Target Start/End: Original strand, 42891044 - 42891109
Alignment:
Q  529 atgttaacaaattcattatagaaatatatgtataaaaaatcgtgcattcaacttcttaaaagttaaa 595  Q
    ||||||| ||| |||||||||||||||||||||  |||||||||| || |||||| |||||||||||    
T  42891044 atgttaagaaactcattatagaaatatatgtatcgaaaatcgtgcgtttaacttc-taaaagttaaa 42891109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 529 - 595
Target Start/End: Complemental strand, 54787934 - 54787868
Alignment:
Q  529 atgttaacaaattcattatagaaatatatgtataaaaaatcgtgcattcaacttcttaaaagttaaa 595  Q
    |||||||  ||||||||||| |||||||  ||| ||||||||| |||||||| ||||||||||||||    
T  54787934 atgttaaggaattcattataaaaatatacatatcaaaaatcgtacattcaacatcttaaaagttaaa 54787868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 526 - 595
Target Start/End: Complemental strand, 55158565 - 55158498
Alignment:
Q  526 cacatgttaacaaattcattatagaaatatatgtataaaaaatcgtgcattcaacttcttaaaagttaaa 595  Q
    |||||||||| ||||| ||||||||||||||  ||| |||  ||||||| ||||||||||||||||||||    
T  55158565 cacatgttaagaaatttattatagaaatatacatattaaa--tcgtgcaatcaacttcttaaaagttaaa 55158498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 524 - 595
Target Start/End: Complemental strand, 47850064 - 47849993
Alignment:
Q  524 gacacatgttaacaaattcattatagaaatatatgtataaaaaatcgtgcattcaacttcttaaaagttaaa 595  Q
    ||||||||||||  || ||||||||||||||||| ||| |||| || ||||||| |||| |||||| |||||    
T  47850064 gacacatgttaaggaactcattatagaaatatatctatcaaaattcatgcattcgactttttaaaaattaaa 47849993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 546 - 594
Target Start/End: Original strand, 17587099 - 17587147
Alignment:
Q  546 atagaaatatatgtataaaaaatcgtgcattcaacttcttaaaagttaa 594  Q
    ||||||| ||| |||| |||| ||||||||||||| |||||||||||||    
T  17587099 atagaaaaatacgtatcaaaagtcgtgcattcaacatcttaaaagttaa 17587147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 543 - 595
Target Start/End: Complemental strand, 28193671 - 28193619
Alignment:
Q  543 attatagaaatatatgtataaaaaatcgtgcattcaacttcttaaaagttaaa 595  Q
    ||||| ||||| ||||||| |||| |||||||||||||||||| ||| |||||    
T  28193671 attatggaaatgtatgtatcaaaagtcgtgcattcaacttcttcaaaattaaa 28193619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 507 - 595
Target Start/End: Complemental strand, 51325628 - 51325541
Alignment:
Q  507 aacttgtgccttcaaatgacacatgttaacaaattcattatagaaatatatgtataaaaaatcgtgcattcaacttcttaaaagttaaa 595  Q
    ||||||| |||||||| | |||| ||||| ||| |||||||| ||||||||  || |||| ||||| ||| |||||||||||| |||||    
T  51325628 aacttgttccttcaaaag-cacacgttaaaaaactcattataaaaatatattcatcaaaagtcgtgtattaaacttcttaaaaattaaa 51325541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 521 - 597
Target Start/End: Complemental strand, 52859662 - 52859586
Alignment:
Q  521 aatgacacatgttaacaaattcattatagaaatatatgtataaaaaatcgtgcattcaacttcttaaaagttaaact 597  Q
    ||||||| |||||||  || ||||| |||||||||| || | | ||  |||||| ||||||||||||||||||||||    
T  52859662 aatgacatatgttaaataactcattgtagaaatatacgtgttataagacgtgcagtcaacttcttaaaagttaaact 52859586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 2e-17; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 541 - 595
Target Start/End: Original strand, 29286007 - 29286061
Alignment:
Q  541 tcattatagaaatatatgtataaaaaatcgtgcattcaacttcttaaaagttaaa 595  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||| |||||    
T  29286007 tcattatagaaatatacgtataaaaaatcgtgcattcaacttcttaaaatttaaa 29286061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 521 - 595
Target Start/End: Original strand, 30249162 - 30249236
Alignment:
Q  521 aatgacacatgttaacaaattcattatagaaatatatgtataaaaaatcgtgcattcaacttcttaaaagttaaa 595  Q
    |||||||||||||||  || |||||||||||||||| |||| |||| ||||||| ||||||||||||||||||||    
T  30249162 aatgacacatgttaaggaactcattatagaaatataggtatcaaaattcgtgcagtcaacttcttaaaagttaaa 30249236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 529 - 595
Target Start/End: Complemental strand, 6469685 - 6469619
Alignment:
Q  529 atgttaacaaattcattatagaaatatatgtataaaaaatcgtgcattcaacttcttaaaagttaaa 595  Q
    |||||||  |||||||||||||||||||| ||| |||| ||||||| |||||||||||||| |||||    
T  6469685 atgttaaggaattcattatagaaatatatttattaaaagtcgtgcagtcaacttcttaaaaattaaa 6469619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 543 - 592
Target Start/End: Original strand, 11659295 - 11659344
Alignment:
Q  543 attatagaaatatatgtataaaaaatcgtgcattcaacttcttaaaagtt 592  Q
    ||||||||||||||||||||||||||| |||||| ||||| |||||||||    
T  11659295 attatagaaatatatgtataaaaaatcatgcattgaacttattaaaagtt 11659344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 526 - 595
Target Start/End: Original strand, 2831381 - 2831450
Alignment:
Q  526 cacatgttaacaaattcattatagaaatatatgtataaaaaatcgtgcattcaacttcttaaaagttaaa 595  Q
    ||||||||||  |||| |||||||||||||||| || | |  |||||||||||||||||||||| |||||    
T  2831381 cacatgttaaagaatttattatagaaatatatgcatcacaggtcgtgcattcaacttcttaaaaattaaa 2831450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 541 - 597
Target Start/End: Original strand, 1065626 - 1065682
Alignment:
Q  541 tcattatagaaatatatgtataaaaaatcgtgcattcaacttcttaaaagttaaact 597  Q
    |||| ||| |||||||||||| |||| |||| |||||||||| ||||||||||||||    
T  1065626 tcataataaaaatatatgtatcaaaagtcgtacattcaacttattaaaagttaaact 1065682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 543 - 595
Target Start/End: Complemental strand, 2614422 - 2614370
Alignment:
Q  543 attatagaaatatatgtataaaaaatcgtgcattcaacttcttaaaagttaaa 595  Q
    |||||| ||||||| |||| |||| ||||||||||||||||| ||||||||||    
T  2614422 attataaaaatatacgtatcaaaagtcgtgcattcaacttctaaaaagttaaa 2614370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 524 - 597
Target Start/End: Original strand, 3787449 - 3787522
Alignment:
Q  524 gacacatgttaacaaattcattatagaaatatatgtataaaaaatcgtgcattcaacttcttaaaagttaaact 597  Q
    ||||||||||||  || | |||||| ||||||| |||| |||| || | ||||||| |||||||||||||||||    
T  3787449 gacacatgttaaagaacttattataaaaatatacgtattaaaagtcatacattcaatttcttaaaagttaaact 3787522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 501 - 593
Target Start/End: Complemental strand, 29033100 - 29033009
Alignment:
Q  501 aatgccaacttgtgccttcaaatgacacatgttaacaaattcattatagaaatatatgtataaaaaatcgtgcattcaacttcttaaaagtta 593  Q
    ||||| || |||||||||||| |||||||||||||  || ||| |||||||||||| |||| |||| | ||||||||||||||||||||||||    
T  29033100 aatgctaatttgtgccttcaa-tgacacatgttaaggaaatcagtatagaaatatacgtatcaaaagttgtgcattcaacttcttaaaagtta 29033009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 490 - 595
Target Start/End: Complemental strand, 15281487 - 15281383
Alignment:
Q  490 ttttattgatgaatgccaacttgtgccttcaaatgacacatgttaacaaattcattatagaaatatatgtataaaaaatcgtgcattcaacttcttaaaa 589  Q
    ||||||||| ||||   |||||||||| ||||  || ||||||||| ||||| |||||||||||||||| || |||||||||||||| ||||| ||||||    
T  15281487 ttttattgacgaatattaacttgtgccatcaag-gatacatgttaaaaaatttattatagaaatatatgcattaaaaatcgtgcatttaactttttaaaa 15281389  T
Q  590 gttaaa 595  Q
     |||||    
T  15281388 attaaa 15281383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 520 - 597
Target Start/End: Original strand, 33254565 - 33254642
Alignment:
Q  520 aaatgacacatgttaacaaattcattatagaaatatatgtataaaaaatcgtgcattcaacttcttaaaagttaaact 597  Q
    |||||||||||||||| ||| || ||||||||||| || ||||||||||||| |||| ||||||| |||||| |||||    
T  33254565 aaatgacacatgttaagaaactcgttatagaaatacatatataaaaaatcgtacattaaacttctaaaaagtaaaact 33254642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 520 - 597
Target Start/End: Original strand, 33274737 - 33274814
Alignment:
Q  520 aaatgacacatgttaacaaattcattatagaaatatatgtataaaaaatcgtgcattcaacttcttaaaagttaaact 597  Q
    |||||||||||||||| ||| || ||||||||||| || ||||||||||||| |||| ||||||| |||||| |||||    
T  33274737 aaatgacacatgttaagaaactcgttatagaaatacatatataaaaaatcgtacattaaacttctaaaaagtaaaact 33274814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 527 - 595
Target Start/End: Original strand, 31635465 - 31635533
Alignment:
Q  527 acatgttaacaaattcattatagaaatatatgtataaaaaatcgtgcattcaacttcttaaaagttaaa 595  Q
    |||||||||  |||||||||| ||||||||  ||| |||| ||||||||||||||||||||||||||||    
T  31635465 acatgttaaggaattcattatggaaatatacatattaaaagtcgtgcattcaacttcttaaaagttaaa 31635533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 524 - 595
Target Start/End: Complemental strand, 37316714 - 37316643
Alignment:
Q  524 gacacatgttaacaaattcattatagaaatatatgtataaaaaatcgtgcattcaacttcttaaaagttaaa 595  Q
    |||| |||||||  || |||||||| |||||||||||| |||||||||| ||| ||||||||||||||||||    
T  37316714 gacaaatgttaaggaactcattataaaaatatatgtatcaaaaatcgtgtatttaacttcttaaaagttaaa 37316643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 521 - 595
Target Start/End: Complemental strand, 28490641 - 28490568
Alignment:
Q  521 aatgacacatgttaacaaattcattatagaaatatatgtataaaaaatcgtgcattcaacttcttaaaagttaaa 595  Q
    |||||||||||||||  |||||||||||||||||||  |||  ||||||||||| ||||||||| ||||||||||    
T  28490641 aatgacacatgttaaggaattcattatagaaatatacatat-caaaatcgtgcaatcaacttctaaaaagttaaa 28490568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 526 - 595
Target Start/End: Complemental strand, 11018080 - 11018011
Alignment:
Q  526 cacatgttaacaaattcattatagaaatatatgtataaaaaatcgtgcattcaacttcttaaaagttaaa 595  Q
    ||||||||||  || | |||||||||||||| |||| |||| ||||||| ||||||||||||||||||||    
T  11018080 cacatgttaaggaacttattatagaaatatacgtattaaaagtcgtgcagtcaacttcttaaaagttaaa 11018011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 526 - 595
Target Start/End: Original strand, 1035591 - 1035660
Alignment:
Q  526 cacatgttaacaaattcattatagaaatatatgtataaaaaatcgtgcattcaacttcttaaaagttaaa 595  Q
    ||||||||||  || ||||||||||||||||  ||| |||| || |||||||||||| ||||||||||||    
T  1035591 cacatgttaaggaactcattatagaaatatacatatcaaaagtcttgcattcaacttattaaaagttaaa 1035660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 541 - 592
Target Start/End: Original strand, 42066662 - 42066713
Alignment:
Q  541 tcattatagaaatatatgtataaaaaatcgtgcattcaacttcttaaaagtt 592  Q
    |||| |||||||||||| ||| |||| ||||||||||||| |||||||||||    
T  42066662 tcataatagaaatatatatattaaaagtcgtgcattcaacatcttaaaagtt 42066713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 532 - 592
Target Start/End: Original strand, 31262587 - 31262648
Alignment:
Q  532 ttaacaaattcattatagaaatatatg-tataaaaaatcgtgcattcaacttcttaaaagtt 592  Q
    |||| ||| ||||||||||||||||   ||| |||||| |||||||||||||||||||||||    
T  31262587 ttaagaaactcattatagaaatataacatatcaaaaattgtgcattcaacttcttaaaagtt 31262648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 554 - 595
Target Start/End: Complemental strand, 50014701 - 50014660
Alignment:
Q  554 atatgtataaaaaatcgtgcattcaacttcttaaaagttaaa 595  Q
    |||||||| |||| || |||||||||||||||||||||||||    
T  50014701 atatgtattaaaagtcatgcattcaacttcttaaaagttaaa 50014660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 543 - 595
Target Start/End: Original strand, 4084738 - 4084790
Alignment:
Q  543 attatagaaatatatgtataaaaaatcgtgcattcaacttcttaaaagttaaa 595  Q
    |||||||||||||| |||| |||| ||||| | ||||||| ||||||||||||    
T  4084738 attatagaaatatacgtattaaaagtcgtgtagtcaactttttaaaagttaaa 4084790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 507 - 595
Target Start/End: Complemental strand, 41884775 - 41884688
Alignment:
Q  507 aacttgtgccttcaaatgacacatgttaacaaattcattatagaaatatatgtataaaaaatcgtgcattcaacttcttaaaagttaaa 595  Q
    |||||||||| |||| || ||||||||||  || |||||||||||| |||  ||| |||| || ||||||  |||||||||||||||||    
T  41884775 aacttgtgccctcaa-tggcacatgttaagtaactcattatagaaacatacatatcaaaagtcatgcatttgacttcttaaaagttaaa 41884688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0116 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 2)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 524 - 595
Target Start/End: Complemental strand, 3102 - 3031
Alignment:
Q  524 gacacatgttaacaaattcattatagaaatatatgtataaaaaatcgtgcattcaacttcttaaaagttaaa 595  Q
    ||||||||||||  || |||||||||| |||||||||| |||| || |||||||||||||||||||||||||    
T  3102 gacacatgttaaggaactcattatagatatatatgtatcaaaagtcatgcattcaacttcttaaaagttaaa 3031  T

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Target: scaffold0116; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 524 - 595
Target Start/End: Complemental strand, 6143 - 6072
Alignment:
Q  524 gacacatgttaacaaattcattatagaaatatatgtataaaaaatcgtgcattcaacttcttaaaagttaaa 595  Q
    ||||||||||||  || |||||||||| |||||||||| |||| || || |||||||||||||||| |||||    
T  6143 gacacatgttaaggaactcattatagatatatatgtatcaaaagtcatggattcaacttcttaaaaattaaa 6072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 526 - 597
Target Start/End: Original strand, 10523678 - 10523749
Alignment:
Q  526 cacatgttaacaaattcattatagaaatatatgtataaaaaatcgtgcattcaacttcttaaaagttaaact 597  Q
    ||||||||||  || |||||||||||||||| |||| |||| |||||||||||| |||||||||||||||||    
T  10523678 cacatgttaaggaactcattatagaaatatacgtatcaaaagtcgtgcattcaatttcttaaaagttaaact 10523749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 526 - 597
Target Start/End: Complemental strand, 41144719 - 41144648
Alignment:
Q  526 cacatgttaacaaattcattatagaaatatatgtataaaaaatcgtgcattcaacttcttaaaagttaaact 597  Q
    ||||||||||  || ||||||||||||||||  ||| |||| ||||||||||||||| ||||||||||||||    
T  41144719 cacatgttaaggaactcattatagaaatatacatatcaaaagtcgtgcattcaactttttaaaagttaaact 41144648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 541 - 595
Target Start/End: Complemental strand, 16627382 - 16627328
Alignment:
Q  541 tcattatagaaatatatgtataaaaaatcgtgcattcaacttcttaaaagttaaa 595  Q
    |||||||| |||||||||||| |||| ||||||||||||||| ||||||||||||    
T  16627382 tcattataaaaatatatgtattaaaagtcgtgcattcaactttttaaaagttaaa 16627328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 526 - 595
Target Start/End: Complemental strand, 554426 - 554357
Alignment:
Q  526 cacatgttaacaaattcattatagaaatatatgtataaaaaatcgtgcattcaacttcttaaaagttaaa 595  Q
    ||||||||||  || ||||||||||||||||||||| ||||  |||||| ||||||| ||||||||||||    
T  554426 cacatgttaaggaactcattatagaaatatatgtattaaaagccgtgcagtcaactttttaaaagttaaa 554357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 521 - 590
Target Start/End: Complemental strand, 8222166 - 8222097
Alignment:
Q  521 aatgacacatgttaacaaattcattatagaaatatatgtataaaaaatcgtgcattcaacttcttaaaag 590  Q
    |||||||||||||||  || |||||||||||||||| |||| ||||| ||||||| ||| ||||||||||    
T  8222166 aatgacacatgttaatgaactcattatagaaatatacgtattaaaaaccgtgcatccaatttcttaaaag 8222097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 521 - 592
Target Start/End: Original strand, 26105027 - 26105098
Alignment:
Q  521 aatgacacatgttaacaaattcattatagaaatatatgtataaaaaatcgtgcattcaacttcttaaaagtt 592  Q
    |||||||||||||||  || | |||| ||||||||| | ||||||| |||||||||||| ||||||||||||    
T  26105027 aatgacacatgttaaggaacttattaaagaaatatacgcataaaaagtcgtgcattcaaattcttaaaagtt 26105098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 526 - 595
Target Start/End: Original strand, 967586 - 967656
Alignment:
Q  526 cacatgttaacaaattcattatagaaatatatgtataaaaaatcgtgcattcaac-ttcttaaaagttaaa 595  Q
    ||||||||||  |||||||||||||||||||||||| |||| | |||||| |||| || ||||||||||||    
T  967586 cacatgttaaggaattcattatagaaatatatgtattaaaagtggtgcatccaacttttttaaaagttaaa 967656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 526 - 588
Target Start/End: Complemental strand, 12000137 - 12000075
Alignment:
Q  526 cacatgttaacaaattcattatagaaatatatgtataaaaaatcgtgcattcaacttcttaaa 588  Q
    ||||||||||| || || ||||||||||||| | |||||||||||||||||||| || |||||    
T  12000137 cacatgttaacgaactcgttatagaaatatacgcataaaaaatcgtgcattcaaatttttaaa 12000075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 530 - 592
Target Start/End: Complemental strand, 24519534 - 24519472
Alignment:
Q  530 tgttaacaaattcattatagaaatatatgtataaaaaatcgtgcattcaacttcttaaaagtt 592  Q
    |||||| ||||| ||||||| ||||| ||||| | || |||||||||||||||||||||||||    
T  24519534 tgttaaaaaatttattataggaatatttgtatcacaagtcgtgcattcaacttcttaaaagtt 24519472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 550 - 595
Target Start/End: Complemental strand, 40044915 - 40044870
Alignment:
Q  550 aaatatatgtataaaaaatcgtgcattcaacttcttaaaagttaaa 595  Q
    |||||||| |||| |||||||||||||||||||||||||| |||||    
T  40044915 aaatatatatatataaaatcgtgcattcaacttcttaaaaattaaa 40044870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 526 - 589
Target Start/End: Complemental strand, 2987542 - 2987480
Alignment:
Q  526 cacatgttaacaaattcattatagaaatatatgtataaaaaatcgtgcattcaacttcttaaaa 589  Q
    |||||||||| ||| ||| |||| |||||||||||| ||||  |||||||||||||||||||||    
T  2987542 cacatgttaa-aaactcactatataaatatatgtatcaaaatccgtgcattcaacttcttaaaa 2987480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 524 - 594
Target Start/End: Original strand, 43340300 - 43340370
Alignment:
Q  524 gacacatgttaacaaattcattatagaaatatatgtataaaaaatcgtgcattcaacttcttaaaagttaa 594  Q
    ||||||||||||  || | |||| ||||||||| | ||||||| | || ||||||||||||||||||||||    
T  43340300 gacacatgttaaggaacttattaaagaaatataagcataaaaagttgtacattcaacttcttaaaagttaa 43340370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 524 - 576
Target Start/End: Original strand, 40845811 - 40845863
Alignment:
Q  524 gacacatgttaacaaattcattatagaaatatatgtataaaaaatcgtgcatt 576  Q
    |||| |||||||  || |||||||| |||||||||||| ||||||||||||||    
T  40845811 gacatatgttaaggaactcattataaaaatatatgtatcaaaaatcgtgcatt 40845863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0482 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0482
Description:

Target: scaffold0482; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 541 - 588
Target Start/End: Complemental strand, 632 - 585
Alignment:
Q  541 tcattatagaaatatatgtataaaaaatcgtgcattcaacttcttaaa 588  Q
    ||||||||||||||||||||| |||| |||||||||||||||||||||    
T  632 tcattatagaaatatatgtatcaaaagtcgtgcattcaacttcttaaa 585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 541 - 588
Target Start/End: Original strand, 7774634 - 7774681
Alignment:
Q  541 tcattatagaaatatatgtataaaaaatcgtgcattcaacttcttaaa 588  Q
    ||||||||||||||||||||| |||| |||||||||||||||||||||    
T  7774634 tcattatagaaatatatgtatcaaaagtcgtgcattcaacttcttaaa 7774681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 541 - 588
Target Start/End: Original strand, 7791281 - 7791328
Alignment:
Q  541 tcattatagaaatatatgtataaaaaatcgtgcattcaacttcttaaa 588  Q
    ||||||||||||||||||||| |||| |||||||||||||||||||||    
T  7791281 tcattatagaaatatatgtatcaaaagtcgtgcattcaacttcttaaa 7791328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 541 - 588
Target Start/End: Original strand, 7811865 - 7811912
Alignment:
Q  541 tcattatagaaatatatgtataaaaaatcgtgcattcaacttcttaaa 588  Q
    ||||||||||||||||||||| |||| |||||||||||||||||||||    
T  7811865 tcattatagaaatatatgtatcaaaagtcgtgcattcaacttcttaaa 7811912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 527 - 594
Target Start/End: Complemental strand, 21574371 - 21574304
Alignment:
Q  527 acatgttaacaaattcattatagaaatatatgtataaaaaatcgtgcattcaacttcttaaaagttaa 594  Q
    ||||||||| ||||||||||||||||||||   || |||| ||||| |||||||||||||||||||||    
T  21574371 acatgttaaaaaattcattatagaaatataaaaatcaaaagtcgtgtattcaacttcttaaaagttaa 21574304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 526 - 595
Target Start/End: Original strand, 41602428 - 41602497
Alignment:
Q  526 cacatgttaacaaattcattatagaaatatatgtataaaaaatcgtgcattcaacttcttaaaagttaaa 595  Q
    ||||||||||  ||||||||||||||||||| | ||||||||||||| |||||  ||||||||| |||||    
T  41602428 cacatgttaaggaattcattatagaaatatacgcataaaaaatcgtgtattcatattcttaaaatttaaa 41602497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 507 - 595
Target Start/End: Complemental strand, 31592502 - 31592415
Alignment:
Q  507 aacttgtgccttcaaatgacacatgttaacaaattcattatagaaatatatgtataaaaaatcgtgcattcaacttcttaaaagttaaa 595  Q
    ||||| ||||||||||| |||||||||||  ||||||||| | ||| ||| |||| |||| ||||||||||||||| |||| |||||||    
T  31592502 aacttatgccttcaaat-acacatgttaaggaattcattacaaaaaaatacgtattaaaagtcgtgcattcaactttttaatagttaaa 31592415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 527 - 595
Target Start/End: Complemental strand, 40505391 - 40505323
Alignment:
Q  527 acatgttaacaaattcattatagaaatatatgtataaaaaatcgtgcattcaacttcttaaaagttaaa 595  Q
    |||||||||  || |||||||  |||||||| ||| |||| ||||||||||||||||||||||||||||    
T  40505391 acatgttaaggaactcattatgaaaatatatatatcaaaagtcgtgcattcaacttcttaaaagttaaa 40505323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 501 - 592
Target Start/End: Original strand, 31313306 - 31313396
Alignment:
Q  501 aatgccaacttgtgccttcaaatgacacatgttaacaaattcattatagaaatatatgtataaaaaatcgtgcattcaacttcttaaaagtt 592  Q
    ||||| |||||||||| ||||  | ||||||||||  || |||||||||||||||| |||| |||| || |||||||||||| |||||||||    
T  31313306 aatgctaacttgtgccctcaaggg-cacatgttaaggaagtcattatagaaatatacgtatcaaaagtcatgcattcaactttttaaaagtt 31313396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 524 - 587
Target Start/End: Original strand, 45244700 - 45244763
Alignment:
Q  524 gacacatgttaacaaattcattatagaaatatatgtataaaaaatcgtgcattcaacttcttaa 587  Q
    ||||||||||||  || |||||||||||||||| |||| |||| ||||||||||||||| ||||    
T  45244700 gacacatgttaatgaactcattatagaaatatacgtattaaaagtcgtgcattcaactttttaa 45244763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 501 - 591
Target Start/End: Original strand, 6530305 - 6530394
Alignment:
Q  501 aatgccaacttgtgccttcaaatgacacatgttaacaaattcattatagaaatatatgtataaaaaatcgtgcattcaacttcttaaaagt 591  Q
    ||||| |||||||||| ||||  | ||||||||||  || | |||| ||||||||| | ||||||| ||||||||||||||||||||||||    
T  6530305 aatgctaacttgtgccctcaaggg-cacatgttaaggaacttattaaagaaatataagcataaaaagtcgtgcattcaacttcttaaaagt 6530394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 501 - 595
Target Start/End: Complemental strand, 39699728 - 39699635
Alignment:
Q  501 aatgccaacttgtgccttcaaatgacacatgttaacaaattcattatagaaatatatgtataaaaaatcgtgcattcaacttcttaaaagttaaa 595  Q
    ||||| |||||||| ||||||  ||||||||||||  | || |||||| ||||||| |||| |||| ||||||||| ||||| ||||||||||||    
T  39699728 aatgctaacttgtgtcttcaag-gacacatgttaaggagtttattataaaaatatacgtatcaaaagtcgtgcatttaactttttaaaagttaaa 39699635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 526 - 595
Target Start/End: Complemental strand, 8114442 - 8114373
Alignment:
Q  526 cacatgttaacaaattcattatagaaatatatgtataaaaaatcgtgcattcaacttcttaaaagttaaa 595  Q
    |||||||||| ||| |||||||| |||||||||||| |||| ||||||| |||| || |||||| |||||    
T  8114442 cacatgttaagaaactcattataaaaatatatgtattaaaagtcgtgcagtcaattttttaaaaattaaa 8114373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 541 - 590
Target Start/End: Complemental strand, 8769121 - 8769072
Alignment:
Q  541 tcattatagaaatatatgtataaaaaatcgtgcattcaacttcttaaaag 590  Q
    |||||||||||||||||||||||||| | |||||||||  ||||||||||    
T  8769121 tcattatagaaatatatgtataaaaagttgtgcattcatattcttaaaag 8769072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 526 - 595
Target Start/End: Original strand, 8867205 - 8867274
Alignment:
Q  526 cacatgttaacaaattcattatagaaatatatgtataaaaaatcgtgcattcaacttcttaaaagttaaa 595  Q
    ||||||||||  || |||||||||||||||| | || |||| | |||||||||||||||||||| |||||    
T  8867205 cacatgttaaagaactcattatagaaatatacgcatcaaaagttgtgcattcaacttcttaaaaattaaa 8867274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 530 - 595
Target Start/End: Original strand, 12703481 - 12703546
Alignment:
Q  530 tgttaacaaattcattatagaaatatatgtataaaaaatcgtgcattcaacttcttaaaagttaaa 595  Q
    |||||| ||| | |||||||||||||| |||||||||||||| ||||||| |||| |||| |||||    
T  12703481 tgttaataaacttattatagaaatatacgtataaaaaatcgtacattcaatttctcaaaaattaaa 12703546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 543 - 595
Target Start/End: Original strand, 21372483 - 21372535
Alignment:
Q  543 attatagaaatatatgtataaaaaatcgtgcattcaacttcttaaaagttaaa 595  Q
    |||||||||||||| | ||||||| ||||| ||||||||| ||||||||||||    
T  21372483 attatagaaatatacgcataaaaagtcgtgtattcaactttttaaaagttaaa 21372535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 501 - 588
Target Start/End: Complemental strand, 5493448 - 5493362
Alignment:
Q  501 aatgccaacttgtgccttcaaatgacacatgttaacaaattcattatagaaatatatgtataaaaaatcgtgcattcaacttcttaaa 588  Q
    ||||| |||||||||| ||||  | |||||||||| ||| |||||||||||||| | | || |||| ||||||||||||||| |||||    
T  5493448 aatgctaacttgtgccctcaaggg-cacatgttaagaaagtcattatagaaatacacgcatcaaaagtcgtgcattcaactttttaaa 5493362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 544 - 597
Target Start/End: Original strand, 41720154 - 41720207
Alignment:
Q  544 ttatagaaatatatgtataaaaaatcgtgcattcaacttcttaaaagttaaact 597  Q
    ||||| ||||||||| || |||| ||||||||| |||||||||||| |||||||    
T  41720154 ttatataaatatatggattaaaagtcgtgcatttaacttcttaaaaattaaact 41720207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 538 - 595
Target Start/End: Original strand, 42685744 - 42685801
Alignment:
Q  538 aattcattatagaaatatatgtataaaaaatcgtgcattcaacttcttaaaagttaaa 595  Q
    |||| ||||||||||||| ||||| |||| ||||| | ||||||||| ||||||||||    
T  42685744 aatttattatagaaatatgtgtatcaaaagtcgtgtagtcaacttctaaaaagttaaa 42685801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0542 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0542
Description:

Target: scaffold0542; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 501 - 589
Target Start/End: Original strand, 4514 - 4601
Alignment:
Q  501 aatgccaacttgtgccttcaaatgacacatgttaacaaattcattatagaaatatatgtataaaaaatcgtgcattcaacttcttaaaa 589  Q
    ||||| |||||||||| ||||  |||||||||||| | | ||||||||||||||||  ||| ||||  |||||||||||||||||||||    
T  4514 aatgctaacttgtgccctcaag-gacacatgttaagatactcattatagaaatatacatatcaaaatgcgtgcattcaacttcttaaaa 4601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0181 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0181
Description:

Target: scaffold0181; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 532 - 594
Target Start/End: Complemental strand, 10877 - 10815
Alignment:
Q  532 ttaacaaattcattatagaaatatatgtataaaaaatcgtgcattcaacttcttaaaagttaa 594  Q
    |||| ||||| ||||||||||||||||||| |||| ||||| ||| ||||| |||||| ||||    
T  10877 ttaagaaatttattatagaaatatatgtatcaaaagtcgtgtatttaactttttaaaaattaa 10815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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