View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18982_low_91 (Length: 230)
Name: NF18982_low_91
Description: NF18982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18982_low_91 |
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| [»] scaffold0036 (1 HSPs) |
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Alignment Details
Target: scaffold0036 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: scaffold0036
Description:
Target: scaffold0036; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 90948 - 91158
Alignment:
| Q |
1 |
gatccaatgattgagttcatgtcaagagagtgccaaagagctcaaaaagcatctgctataattttgaatacatttgatgctttagagcatgatgttttgg |
100 |
Q |
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| T |
90948 |
gatccaatgattgagttcatgtcaagagagtgccaaagagctcaaaaagcatctgctataattttgaacacatttgatgctttagagcatgatgttttgg |
91047 |
T |
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| Q |
101 |
aagcattctcttcaatttttcctcctatcttttccattggtcccttaaatttactcttgaaaaaggtgaccaatgaagaattgaactcaatagggtccaa |
200 |
Q |
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| T |
91048 |
aagcattctcttcaatttttcctcctatctattccattggccccttaaatttactcttgaaagatgtgaccaatgaagaattgaactcaatagggtccaa |
91147 |
T |
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| Q |
201 |
cctttggaaag |
211 |
Q |
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||||||||||| |
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| T |
91148 |
cctttggaaag |
91158 |
T |
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Target: chr5 (Bit Score: 71; Significance: 3e-32; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 31 - 209
Target Start/End: Complemental strand, 26672664 - 26672486
Alignment:
| Q |
31 |
tgccaaagagctcaaaaagcatctgctataattttgaatacatttgatgctttagagcatgatgttttggaagcattctcttcaatttttcctcctatct |
130 |
Q |
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| T |
26672664 |
tgccaaagagctcaaaaagcatctgcaataattttcaacacatttgacaatttggaacacgatgttttggaagcattctcttccattttacctcctgttt |
26672565 |
T |
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| Q |
131 |
tttccattggtcccttaaatttactcttgaaaaaggtgaccaatgaagaattgaactcaatagggtccaacctttggaa |
209 |
Q |
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| T |
26672564 |
attccattggtcccttgcatttactcataaaagatgtgacaaataaggaattggattcaattgggtccaacctatggaa |
26672486 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 31 - 209
Target Start/End: Complemental strand, 26944262 - 26944084
Alignment:
| Q |
31 |
tgccaaagagctcaaaaagcatctgctataattttgaatacatttgatgctttagagcatgatgttttggaagcattctcttcaatttttcctcctatct |
130 |
Q |
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|||||||||||||||||||||||||| |||||||| || |||||||| ||| || || ||||||||||||||||||||||| ||||| |||||| | | |
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| T |
26944262 |
tgccaaagagctcaaaaagcatctgcaataattttcaacacatttgacaatttggaacacgatgttttggaagcattctcttccattttacctcctgttt |
26944163 |
T |
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| Q |
131 |
tttccattggtcccttaaatttactcttgaaaaaggtgaccaatgaagaattgaactcaatagggtccaacctttggaa |
209 |
Q |
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| T |
26944162 |
attccattggtcccttgcatttactcataaaagatgtgacaaataaggaattggattcaattgggtccaacctatggaa |
26944084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 34 - 211
Target Start/End: Complemental strand, 26901953 - 26901770
Alignment:
| Q |
34 |
caaagagctcaaaaagcatctgctataattttgaatacatttgatgctttagagcatgatgttttggaagcattctcttcaatt------tttcctccta |
127 |
Q |
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| T |
26901953 |
caaagagctctaaaagcttcagcaataattttaaacacatttgatgcattagaacacaacgttttagaagcattctcatccattgataatttacctccag |
26901854 |
T |
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| Q |
128 |
tcttttccattggtcccttaaatttactcttgaaaaaggtgaccaatgaagaattgaactcaatagggtccaacctttggaaag |
211 |
Q |
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| T |
26901853 |
tttattcaattggtccaataaattttctcttaaaaaatgtgactgatgaagaattgaactctattggatccaacctatggaaag |
26901770 |
T |
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