View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18982_low_95 (Length: 222)
Name: NF18982_low_95
Description: NF18982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18982_low_95 |
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| [»] scaffold0159 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 181; Significance: 6e-98; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 14 - 202
Target Start/End: Complemental strand, 5830638 - 5830450
Alignment:
| Q |
14 |
agaagcaaaggtgatggacatgtacagtaaaaaatgtttaggtccagcgaaacaaggagttcgcttggggcttgttagtggtataggatttggctgctcg |
113 |
Q |
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| T |
5830638 |
agaatcaaaggtgatggacatgtacagtaaaaaatgtttaggcccagcgaaacaaggagttcgcttggggcttgttagtggtataggatttggctgctcg |
5830539 |
T |
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| Q |
114 |
tttttagttctatattgcacaaatgctttcattttttacataggatctgttctagtgcaacacggcaaagcaacttttacagaagtttt |
202 |
Q |
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| T |
5830538 |
tttttagttctatattgcacaaatgctttcattttttacataggatctgttctagtgcaacacggcaaagcaacttttacagaagtttt |
5830450 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 20 - 190
Target Start/End: Original strand, 5825920 - 5826090
Alignment:
| Q |
20 |
aaaggtgatggacatgtacagtaaaaaatgtttaggtccagcgaaacaaggagttcgcttggggcttgttagtggtataggatttggctgctcgttttta |
119 |
Q |
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| T |
5825920 |
aaaggtgatggatatgtaccagaaaaaatgttcagcaccagaaaaacaaggtgttaggttgggacttgttagtggtataggattcggtttctcatttttt |
5826019 |
T |
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| Q |
120 |
gttctatattgcacaaatgctttcattttttacataggatctgttctagtgcaacacggcaaagcaacttt |
190 |
Q |
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| T |
5826020 |
gctctatactgcacaaatgctttctgtttctacataggatcagttcttatgcaacacggcaaagcaacttt |
5826090 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 14 - 202
Target Start/End: Original strand, 5767794 - 5767982
Alignment:
| Q |
14 |
agaagcaaaggtgatggacatgtacagtaaaaaatgtttaggtccagcgaaacaaggagttcgcttggggcttgttagtggtataggatttggctgctcg |
113 |
Q |
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| T |
5767794 |
agaatcaaaggtgatggatatgtaccagaagaaatgttcagggccagaaaaacaaggtgttcattcagggcttgtgagtggtgcaggatttggtttctct |
5767893 |
T |
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| Q |
114 |
tttttagttctatattgcacaaatgctttcattttttacataggatctgttctagtgcaacacggcaaagcaacttttacagaagtttt |
202 |
Q |
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| T |
5767894 |
tttgtcgctctatattgcatgagtgctttttgtttctacataggatctgtcctagtgcaacacgggaaagcaacttttcaagaagtttt |
5767982 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 64 - 188
Target Start/End: Original strand, 5781382 - 5781506
Alignment:
| Q |
64 |
aacaaggagttcgcttggggcttgttagtggtataggatttggctgctcgtttttagttctatattgcacaaatgctttcattttttacataggatctgt |
163 |
Q |
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| T |
5781382 |
aacaaggtgttaggttgggacttgttagtggtgtaggatttggtttctaattttttgctctttactgcacaaatgatttctgtttctacataggatcagt |
5781481 |
T |
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| Q |
164 |
tctagtgcaacacggcaaagcaact |
188 |
Q |
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| T |
5781482 |
tcttatggaacatggcaaagcaact |
5781506 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 14 - 187
Target Start/End: Complemental strand, 29328165 - 29327992
Alignment:
| Q |
14 |
agaagcaaaggtgatggacatgtacagtaaaaaatgtttaggtccagcgaaacaaggagttcgcttggggcttgttagtggtataggatttggctgctcg |
113 |
Q |
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|||| |||||||||||||||||||| | |||||||||| || |||||||||||||| ||||||| |||||||||||||||| |||||||||| | || |
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| T |
29328165 |
agaatcaaaggtgatggacatgtacgggaaaaaatgttctggaccagcgaaacaaggtgttcgctcggggcttgttagtggtgtaggatttggtttatct |
29328066 |
T |
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| Q |
114 |
tttttagttctatattgcacaaatgctttcattttttacataggatctgttctagtgcaacacggcaaagcaac |
187 |
Q |
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| T |
29328065 |
tttttaattctatattgcacaaatgctttcatcttctacataggatctattttagtgcatcacaggaaagcaac |
29327992 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0159 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0159
Description:
Target: scaffold0159; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 64 - 188
Target Start/End: Original strand, 26714 - 26838
Alignment:
| Q |
64 |
aacaaggagttcgcttggggcttgttagtggtataggatttggctgctcgtttttagttctatattgcacaaatgctttcattttttacataggatctgt |
163 |
Q |
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||||||| ||| | ||||| |||||||||||| |||||||||| | || ||||| | ||| || |||||||||| |||| ||| ||||||||||| || |
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| T |
26714 |
aacaaggtgttaggttgggacttgttagtggtgtaggatttggtttctaattttttgctctttactgcacaaatgatttctgtttctacataggatcagt |
26813 |
T |
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| Q |
164 |
tctagtgcaacacggcaaagcaact |
188 |
Q |
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||| || |||| |||||||||||| |
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| T |
26814 |
tcttatggaacatggcaaagcaact |
26838 |
T |
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