View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18982_low_96 (Length: 221)
Name: NF18982_low_96
Description: NF18982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18982_low_96 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 180; Significance: 2e-97; HSPs: 11)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 32 - 215
Target Start/End: Complemental strand, 39463925 - 39463742
Alignment:
| Q |
32 |
gaagatcaggttaaggagattgcacttgctattgagaatagtggggctcgctttgtttggtctctacgtaaacccccaccaaagggcgccatgattgcgc |
131 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39463925 |
gaagatcaggttaaggagattgcacttgctattgagaatagtggggctcgctttgtttggtctctacgtaaacccccaccaaagggcgccatgattgcgc |
39463826 |
T |
|
| Q |
132 |
catctgattaccctctttctgatttaagttccgttttacccgaaggattcttatatcggactgtagagattggaagggtgattg |
215 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39463825 |
catctgattaccctctttctgatttaggttccgttttacccgaaggattcttatatcggactgtagagattggaagggtgattg |
39463742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 35 - 215
Target Start/End: Complemental strand, 39470125 - 39469945
Alignment:
| Q |
35 |
gatcaggttaaggagattgcacttgctattgagaatagtggggctcgctttgtttggtctctacgtaaacccccaccaaagggcgccatgattgcgccat |
134 |
Q |
| |
|
||||||||||||| ||| ||||||||| | ||||||| ||||| || |||| ||||||||||||||||| ||||| |||||| ||||| ||||||||| |
|
|
| T |
39470125 |
gatcaggttaaggggatcgcacttgctgtagagaatactggggtccgtattgtgtggtctctacgtaaaccaccacctaagggcaccatggttgcgccat |
39470026 |
T |
|
| Q |
135 |
ctgattaccctctttctgatttaagttccgttttacccgaaggattcttatatcggactgtagagattggaagggtgattg |
215 |
Q |
| |
|
|||||||||||||||||||||| ||||| |||||||| |||||||||||| || |||| | ||||||||||||||| |||| |
|
|
| T |
39470025 |
ctgattaccctctttctgatttgagttcggttttaccagaaggattcttagataggacagaagagattggaagggttattg |
39469945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 39451780 - 39451988
Alignment:
| Q |
1 |
ctttgggagcaggggttgtttcgagtgagaagaagatcaggttaaggagattgcacttgctattgagaatagtggggctcgctttgtttggtctctacgt |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||| || |||||||||||||| |||| ||||||||||||||||||||| | ||| || |||||||| ||| |
|
|
| T |
39451780 |
ctttgggagcaggggttgtttcga-tgag-----gaccaggttaaggagatcgcacatgctattgagaatagtggggcccacttcgtatggtctctccgt |
39451873 |
T |
|
| Q |
101 |
aaacccccaccaaagggcgccatgattgcgccatctgattaccctctttctgatttaagttccgttttacccgaaggattcttatatcggactgtagaga |
200 |
Q |
| |
|
||||| ||||||||||||||||| ||| || ||||||||| ||||||||||| | |||| |||||||| |||||||||||| |||| || | ||||| |
|
|
| T |
39451874 |
aaaccagcaccaaagggcgccatggctgcaccttctgattacactctttctgatctgtgttcggttttaccagaaggattcttagatcgaacggaagaga |
39451973 |
T |
|
| Q |
201 |
ttggaagggtgattg |
215 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
39451974 |
ttggaagggtgattg |
39451988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 35 - 215
Target Start/End: Complemental strand, 39457660 - 39457480
Alignment:
| Q |
35 |
gatcaggttaaggagattgcacttgctattgagaatagtggggctcgctttgtttggtctctacgtaaacccccaccaaagggcgccatgattgcgccat |
134 |
Q |
| |
|
||||||||||||||||| || |||||| | ||||||| ||||| || ||||| ||||||||||||||||| ||||| |||| | |||||| |||||||| |
|
|
| T |
39457660 |
gatcaggttaaggagatcgcccttgctgtagagaatactggggtccgatttgtgtggtctctacgtaaaccaccaccgaaggacaccatgaatgcgccat |
39457561 |
T |
|
| Q |
135 |
ctgattaccctctttctgatttaagttccgttttacccgaaggattcttatatcggactgtagagattggaagggtgattg |
215 |
Q |
| |
|
|||||||| ||||||||||||| ||||| |||||||| |||||||||||| || |||| | ||||||||||||||| |||| |
|
|
| T |
39457560 |
ctgattacactctttctgatttgagttcggttttaccagaaggattcttagataggacagcagagattggaagggttattg |
39457480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 32 - 208
Target Start/End: Original strand, 39476317 - 39476493
Alignment:
| Q |
32 |
gaagatcaggttaaggagattgcacttgctattgagaatagtggggctcgctttgtttggtctctacgtaaacccccaccaaagggcgccatgattgcgc |
131 |
Q |
| |
|
|||||||||||||||||||| |||| |||| |||||||||||||||| ||||| || |||||||| |||||||| ||| |||||||| | ||| ||| | |
|
|
| T |
39476317 |
gaagatcaggttaaggagatcgcacatgctgttgagaatagtggggcacgcttcgtgtggtctctgcgtaaacctccagcaaagggcactatggctgcac |
39476416 |
T |
|
| Q |
132 |
catctgattaccctctttctgatttaagttccgttttacccgaaggattcttatatcggactgtagagattggaagg |
208 |
Q |
| |
|
| || ||||||||||||| |||||| || |||||||| |||||||||||| || | |||| |||||||||||| |
|
|
| T |
39476417 |
cctcggattaccctctttatgatttgggtctggttttacctgaaggattcttagatagaactgctgagattggaagg |
39476493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 32 - 208
Target Start/End: Original strand, 39484068 - 39484244
Alignment:
| Q |
32 |
gaagatcaggttaaggagattgcacttgctattgagaatagtggggctcgctttgtttggtctctacgtaaacccccaccaaagggcgccatgattgcgc |
131 |
Q |
| |
|
|||||||||||||||||||| |||| || | |||||||||||||||| ||||| || |||||||| |||||||| | | ||||||| ||||| ||| | |
|
|
| T |
39484068 |
gaagatcaggttaaggagatcgcacatgttgttgagaatagtggggcacgcttcgtgtggtctctgcgtaaacctctagtaaagggcaccatggctgcac |
39484167 |
T |
|
| Q |
132 |
catctgattaccctctttctgatttaagttccgttttacccgaaggattcttatatcggactgtagagattggaagg |
208 |
Q |
| |
|
| ||||||||| |||||| |||||| || | |||||||| |||||||||||| |||| |||| |||||||||||| |
|
|
| T |
39484168 |
cctctgattactctctttatgatttgggtccggttttacctgaaggattcttagatcgaactgccgagattggaagg |
39484244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 35 - 215
Target Start/End: Original strand, 39487273 - 39487453
Alignment:
| Q |
35 |
gatcaggttaaggagattgcacttgctattgagaatagtggggctcgctttgtttggtctctacgtaaacccccaccaaagggcgccatgattgcgccat |
134 |
Q |
| |
|
||||||||||| |||||||||| ||||||||||||| |||| || || ||||| |||||||| ||||||||| |||| ||||| |||| || | || | |
|
|
| T |
39487273 |
gatcaggttaaagagattgcacatgctattgagaattgtggagcccgttttgtgtggtctctgcgtaaaccctcaccgaagggaatcatggtttcaccct |
39487372 |
T |
|
| Q |
135 |
ctgattaccctctttctgatttaagttccgttttacccgaaggattcttatatcggactgtagagattggaagggtgattg |
215 |
Q |
| |
|
|||||||||||||||||||||| || |||||||| |||||||||||| |||| || || |||||||||||| |||| |
|
|
| T |
39487373 |
ctgattaccctctttctgatttggaatcggttttacctgaaggattcttagatcgaacaacagggattggaagggtaattg |
39487453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 35 - 215
Target Start/End: Original strand, 39455435 - 39455616
Alignment:
| Q |
35 |
gatcaggttaaggagattgcacttgctattgagaatagtggggctcgctttgtttggtctctacgtaaacccccaccaaaggg-cgccatgattgcgcca |
133 |
Q |
| |
|
||||||||||||||||| ||| |||||||||||||||| | | | ||| | |||||||| |||||||| ||| ||||| ||||| | ||| || |
|
|
| T |
39455435 |
gatcaggttaaggagatcgcatgtgctattgagaatagtaagtcccacttcatatggtctctccgtaaacctgtaccgaaggggcgccagggctgcacct |
39455534 |
T |
|
| Q |
134 |
tctgattaccctctttctgatttaagttccgttttacccgaaggattcttatatcggactgtagagattggaagggtgattg |
215 |
Q |
| |
|
||||||||| ||||||||||||| |||| |||||||||||||||||||| |||| || | |||||||||||||||||||| |
|
|
| T |
39455535 |
tctgattacactctttctgatttgtgttcgattttacccgaaggattcttagatcgtacggcagagattggaagggtgattg |
39455616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 35 - 210
Target Start/End: Original strand, 39472838 - 39473013
Alignment:
| Q |
35 |
gatcaggttaaggagattgcacttgctattgagaatagtggggctcgctttgtttggtctctacgtaaacccccaccaaagggcgccatgattgcgccat |
134 |
Q |
| |
|
|||||||||| | |||||||| |||||||||||||||||||| || || | |||||||| |||||||| ||||| ||||| ||||| |||| | |
|
|
| T |
39472838 |
gatcaggttacgcagattgcatgcgctattgagaatagtggggcccggttcatatggtctcttcgtaaacctccaccggagggcaccatggcctcgccct |
39472937 |
T |
|
| Q |
135 |
ctgattaccctctttctgatttaagttccgttttacccgaaggattcttatatcggactgtagagattggaagggt |
210 |
Q |
| |
|
||||||||||||||| |||||| |||| ||||||||||||||| ||| | ||||| | ||||||||||||||| |
|
|
| T |
39472938 |
ctgattaccctctttttgatttgggttcaagtttacccgaaggatttttagagcggacagcagagattggaagggt |
39473013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 58 - 156
Target Start/End: Complemental strand, 43311872 - 43311774
Alignment:
| Q |
58 |
tgctattgagaatagtggggctcgctttgtttggtctctacgtaaacccccaccaaagggcgccatgattgcgccatctgattaccctctttctgattt |
156 |
Q |
| |
|
|||||||||||| |||| ||||||||| | |||||||| || ||||||||||| ||||| ||||| || | ||||||||||| ||||||||||||| |
|
|
| T |
43311872 |
tgctattgagaaaagtgaggctcgcttcctgtggtctctgcgaaaacccccaccgaagggaaccatgggtgagacatctgattactctctttctgattt |
43311774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 35 - 215
Target Start/End: Original strand, 39461058 - 39461241
Alignment:
| Q |
35 |
gatcaggttaaggagattgcacttgctattgagaatagtggggctcgctttgtttggtctctacgtaaacccccaccaaaggg---cgccatgattgcgc |
131 |
Q |
| |
|
|||||| |||||||||| |||| ||| |||||| ||||||| | | || | |||||||| ||||||||| ||| ||||| ||||||| |||| | |
|
|
| T |
39461058 |
gatcagattaaggagatcgcacatgccattgaggatagtggcgtccatttcatatggtctcttcgtaaacccaaaccgaagggtgtcgccatggttgcac |
39461157 |
T |
|
| Q |
132 |
catctgattaccctctttctgatttaagttccgttttacccgaaggattcttatatcggactgtagagattggaagggtgattg |
215 |
Q |
| |
|
| ||||||||| ||||| |||| || | | |||||||||||||| |||||| ||||||| | || |||||||||||| |||| |
|
|
| T |
39461158 |
cctctgattactctcttactgaattgggcttggttttacccgaagggttcttagatcggacagcagggattggaagggtcattg |
39461241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University