View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18983_low_1 (Length: 630)
Name: NF18983_low_1
Description: NF18983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18983_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 299 - 600
Target Start/End: Original strand, 12867255 - 12867567
Alignment:
| Q |
299 |
ggtgaattactcaatttcttaggaggaattagtggt------gatgatcttaaggagcgaagccaagttttgtatgataaagtcaagaacaagttttatt |
392 |
Q |
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| T |
12867255 |
ggtgaattactcaatttcttagcaggaactagttgtagttgtgatgatcttaaggagcgaagccaagttttgtatgataaagtgaagaacaagtttcatt |
12867354 |
T |
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| Q |
393 |
ctgataagaacttcttcgtgtgtgtgatccaaatgacatacattaaaagagatcttatggtaacaaaatattttatttgatcacttttattggtaatata |
492 |
Q |
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| T |
12867355 |
ctgataagaacttcttcgtgt--gtgatccaaatgacatacattaaaagagatcttatggtaacaaaatattttatttgatcacttttattggtaatata |
12867452 |
T |
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| Q |
493 |
gaaataaaataaaatattt--tgtgtatgtgataaaattttgagttaactctcaatatcaattccttaacgagattaattgtta-----taatcgtgata |
585 |
Q |
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| T |
12867453 |
gaaataaaataaaatattttatgtgtatgtgataaaattttgagttaactctcaatatcaattccttaacgagattaattgttatgtactaatggtgata |
12867552 |
T |
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| Q |
586 |
ttcttaattatacgt |
600 |
Q |
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| T |
12867553 |
ttcttaattttacgt |
12867567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 12866958 - 12867161
Alignment:
| Q |
1 |
gttgaaaagagcgacaattctttgaaaattattaaggatccatcatcacggcgaggtaaaaggccaaaatcttcatcaccagattctggagtttctaaga |
100 |
Q |
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| T |
12866958 |
gttgaaaagagcgacaattctttgaaaattattaaggatccttcatcacggcgaggtaaaaggccaaaatcttcatcaccgtcttctggagtttctaaga |
12867057 |
T |
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| Q |
101 |
agatgaaaaataatccagaggaacaaaaagaatctaagcatgagaagagaaaagtccaagcacatgcaagatttcgtaattttaaggatgtggacaatgg |
200 |
Q |
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| T |
12867058 |
agatgaaaaacaatccagaagaacaaaaagaatctaagcatgagaagagaaaagtccaagcacatgcaagatttcataattttaaggatgtggacaatgg |
12867157 |
T |
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| Q |
201 |
ttgg |
204 |
Q |
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|||| |
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| T |
12867158 |
ttgg |
12867161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 56; Significance: 7e-23; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 91 - 202
Target Start/End: Original strand, 15134284 - 15134395
Alignment:
| Q |
91 |
gtttctaagaagatgaaaaataatccagaggaacaaaaagaatctaagcatgagaagagaaaagtccaagcacatgcaagatttcgtaattttaaggatg |
190 |
Q |
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| T |
15134284 |
gtttgtaagaagatgaaaatcaacccagaggaacaaaaagaatctaagcatgagaagaaaatattccaatctcaagcaaaatttcataattttaaggata |
15134383 |
T |
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| Q |
191 |
tggacaatggtt |
202 |
Q |
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| T |
15134384 |
tgaacaatggtt |
15134395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 427 - 476
Target Start/End: Original strand, 15134613 - 15134662
Alignment:
| Q |
427 |
gacatacattaaaagagatcttatggtaacaaaatattttatttgatcac |
476 |
Q |
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| T |
15134613 |
gacacacattgagagagatcttttggtaacaaactattttatttgatcac |
15134662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 7e-20; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 322 - 480
Target Start/End: Original strand, 49743134 - 49743292
Alignment:
| Q |
322 |
aggaattagtggtgatgatcttaaggagcgaagccaagttttgtatgataaagtcaagaacaagttttattctgataagaacttcttcgtgtgtgtgatc |
421 |
Q |
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| T |
49743134 |
aggaagtagttgtgatgatcttaaggagagaagcaaagttttgtacgacaaagtgaagaattttttccacgctgatatggatttcttcatgtgtatgatc |
49743233 |
T |
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| Q |
422 |
caaatgacatacattaaaagagatcttatggtaacaaaatattttatttgatcactttt |
480 |
Q |
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| T |
49743234 |
caaaagacatacattaagaaagatgtcttggtaacaaaacattttatttgatcactttt |
49743292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 100 - 204
Target Start/End: Original strand, 49742916 - 49743020
Alignment:
| Q |
100 |
aagatgaaaaataatccagaggaacaaaaagaatctaagcatgagaagagaaaagtccaagcacatgcaagatttcgtaattttaaggatgtggacaatg |
199 |
Q |
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| T |
49742916 |
aagatgaaaatcaattcaaaagaacaaaaagaacctaagcatgagaagagaaaagtccaagaacaaggaaggtttcttaacttcaaggatacggacaatg |
49743015 |
T |
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| Q |
200 |
gttgg |
204 |
Q |
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||||| |
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| T |
49743016 |
gttgg |
49743020 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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