View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18983_low_2 (Length: 512)
Name: NF18983_low_2
Description: NF18983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18983_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 292; Significance: 1e-164; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 179 - 503
Target Start/End: Complemental strand, 30180925 - 30180601
Alignment:
| Q |
179 |
acataaattaccaatagttcaatatgttgaaatgtcctttggaaatataatgtgcatgttagctattagtagtgagtgaaaagaatgtgaaattcactaa |
278 |
Q |
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| T |
30180925 |
acataaattaccaatagttcaatatgttgaaatgtcctttggaaatataatgtgcatgttagctattagtagtgagtgaaaagaatgtgaaatgcactaa |
30180826 |
T |
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| Q |
279 |
tcaaataaaaacgaaagaatgggaaatgttattagctgtttccattgcataatttagacttaaaatttgtactatttacttatttagcgagcaacttaat |
378 |
Q |
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| T |
30180825 |
tcaaataaaaacgaaagaatgggaaatgttattagctgtttccattgcataatttagacttaaaatttgtactatttacttatttagtgagcaacttaat |
30180726 |
T |
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| Q |
379 |
tgttgtgactgataatattattgcatatttgcatagattcttctcatgtgnnnnnnncacttgtattcatacctaaaaggcagaaaagtgttttgccttt |
478 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| |
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| T |
30180725 |
tgttgtgactgataatattattgcatatttgcatagattcttctcatgtgtttttttcatttgtattcatacctaaaaggcagaaaagtgttttgccttt |
30180626 |
T |
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| Q |
479 |
tcaacaatatagcttcatatattat |
503 |
Q |
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||||||||||||||||||||||||| |
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| T |
30180625 |
tcaacaatatagcttcatatattat |
30180601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 16 - 140
Target Start/End: Complemental strand, 30181088 - 30180964
Alignment:
| Q |
16 |
aaaactccagctgcattagattgatattcatggttcaaacttgaaagggtttgtaggttacaaaatacttcttggcatgttatagatacgagggttgcag |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30181088 |
aaaactccagctgcattagattgatattcatggttcaaacttgaaagggtttgtaggttacaaaatacttcttggcatgttatagatacgagggttgcag |
30180989 |
T |
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| Q |
116 |
ccacataactcaccagcatcttatg |
140 |
Q |
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||||||||||||||||||||||||| |
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| T |
30180988 |
ccacataactcaccagcatcttatg |
30180964 |
T |
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