View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18983_low_6 (Length: 322)
Name: NF18983_low_6
Description: NF18983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18983_low_6 |
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| [»] scaffold0361 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 151; Significance: 7e-80; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 17 - 175
Target Start/End: Complemental strand, 40719082 - 40718924
Alignment:
| Q |
17 |
aagaatgtatgcgtgcgtatatagatattcaacgtgtgatgaaaaatgtatcttcatttcaacatttaagtcaaaataaaacttaaatagaatgatccct |
116 |
Q |
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| T |
40719082 |
aagaatgtatgcgtgcgtatatagatattcaacgtgtgatgaaaaatgtatcttcatttcaacatttaactcaaaataaaacttaaatagaatgatccct |
40718983 |
T |
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| Q |
117 |
agaacctgaggtggagtttcactcgagatatatatttacttttacactctgtttggtat |
175 |
Q |
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| T |
40718982 |
agaacctgaggtgcagtttcactcgagatatatatttacttttacactctgtttggtat |
40718924 |
T |
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Target: chr7; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 226 - 310
Target Start/End: Complemental strand, 40718873 - 40718789
Alignment:
| Q |
226 |
ccaacttctcttgtttgatatgccaagaaatagaaaagagagatagaattatgatgggacctaccacttttgtttttcttctctg |
310 |
Q |
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| T |
40718873 |
ccaacttctcttgtttggtatgccaagaaatatagaagagagatagaattatggtgggatctaccacttttgcttttcttctctg |
40718789 |
T |
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Target: chr4 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 226 - 309
Target Start/End: Complemental strand, 52884263 - 52884180
Alignment:
| Q |
226 |
ccaacttctcttgtttgatatgccaagaaatagaaaagagagatagaattatgatgggacctaccacttttgtttttcttctct |
309 |
Q |
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| T |
52884263 |
ccaacttctcttgtttggtacgccaagaaatagagaagagagatagaattatggtgggccccaccacttttgcttttcttctct |
52884180 |
T |
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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 228 - 296
Target Start/End: Original strand, 53403307 - 53403375
Alignment:
| Q |
228 |
aacttctcttgtttgatatgccaagaaatagaaaagagagatagaattatgatgggacctaccactttt |
296 |
Q |
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| T |
53403307 |
aacttctcttgtttggtatgcagagaaataaggaagagagaaagaattttggtgggacccaccactttt |
53403375 |
T |
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Target: scaffold0361 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0361
Description:
Target: scaffold0361; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 226 - 310
Target Start/End: Original strand, 13444 - 13528
Alignment:
| Q |
226 |
ccaacttctcttgtttgatatgccaagaaatagaaaagagagatagaattatgatgggacctaccacttttgtttttcttctctg |
310 |
Q |
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| T |
13444 |
ccaacttctcttgtttggtacaccaagaaatagagaagagagatagaattatggtgggccccaccacttttgcttttcttctctg |
13528 |
T |
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