View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18983_low_7 (Length: 304)
Name: NF18983_low_7
Description: NF18983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18983_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 201; Significance: 1e-110; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 17 - 289
Target Start/End: Complemental strand, 4846684 - 4846412
Alignment:
| Q |
17 |
tgaagctgggtttgataattagttcccttttatattttgtgattttaatgttaattcaaaatcaaggatgtaacggatgcttagagaaagagagaatagg |
116 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||| || |||||||| | || ||||||||||||||| ||||||||||||||||||||||| |
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| T |
4846684 |
tgaagctgggtttgataattagtttccttttatattttgtgacattgatgttaatgctaactcaaggatgtaacggttgcttagagaaagagagaatagg |
4846585 |
T |
|
| Q |
117 |
gttgttggagatcaagcactacatcttgtcacaacaagacgaaggagatgcttatgatatcgaacaattgggttcatgggttgatgatagagatagcaat |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || | || ||||||||||||||||||||||||||||||||||| |
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| T |
4846584 |
gttgttggagatcaagcactacatcttgtcacaacaagacgaaggagattcttataatgacaaagaattgggttcatgggttgatgatagagatagcaat |
4846485 |
T |
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| Q |
217 |
tgttgtgtttgggatagagtcgagtgctcttctggtcacgtaactgaattatcccttgttcggttactatttt |
289 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||| | ||| |||||||||||||| |
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| T |
4846484 |
tgttgtgtttgggatagagtcgagtgctcttctggtcacataactgaattattctttgatcggttactatttt |
4846412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 17 - 270
Target Start/End: Original strand, 5178454 - 5178707
Alignment:
| Q |
17 |
tgaagctgggtttgataattagttcccttttatattttgtgattttaatgttaattcaaaatcaaggatgtaacggatgcttagagaaagagagaatagg |
116 |
Q |
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||||| ||||||||||| | ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||| |
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| T |
5178454 |
tgaagttgggtttgatattcagttcccttttatattttgtgattttaatgttaatgcaaaatcaaggatgtaagggatgcttagagaaggagagaatagg |
5178553 |
T |
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| Q |
117 |
gttgttggagatcaagcactacatcttgtcacaacaagacgaaggagatgcttatgatatcgaacaattgggttcatgggttgatgatagagatagcaat |
216 |
Q |
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| T |
5178554 |
gctgttggagatcaagcactacatcttgtcacaacaagacaaaggagattcttataataacaaagaattgggttcatggattgatgatagagatagcaat |
5178653 |
T |
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| Q |
217 |
tgttgtgtttgggatagagtcgagtgctcttctggtcacgtaactgaattatcc |
270 |
Q |
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|||||||||||| |||||||| ||||||||| ||||||| || |||||||||| |
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| T |
5178654 |
tgttgtgtttggaatagagtcaagtgctcttttggtcacatagttgaattatcc |
5178707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 17 - 150
Target Start/End: Original strand, 5165244 - 5165377
Alignment:
| Q |
17 |
tgaagctgggtttgataattagttcccttttatattttgtgattttaatgttaattcaaaatcaaggatgtaacggatgcttagagaaagagagaatagg |
116 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5165244 |
tgaagttgggtttgataattagttcccttttatattttgtgattttaatgttaattcaaaatcaaggatgtaacggatgcttagagaaagagagaatagg |
5165343 |
T |
|
| Q |
117 |
gttgttggagatcaagcactacatcttgtcacaa |
150 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |
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| T |
5165344 |
gttgttggagatcaagcactacatcttgtcacaa |
5165377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 17 - 141
Target Start/End: Original strand, 5141099 - 5141223
Alignment:
| Q |
17 |
tgaagctgggtttgataattagttcccttttatattttgtgattttaatgttaattcaaaatcaaggatgtaacggatgcttagagaaagagagaatagg |
116 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
5141099 |
tgaagttgggtttgataattagttcccttttatattttgtgacattgatgttaatgcaaaatcaaggatgtaagggatgcttagagaaagagagaatagg |
5141198 |
T |
|
| Q |
117 |
gttgttggagatcaagcactacatc |
141 |
Q |
| |
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| ||||||||||||||||||||||| |
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| T |
5141199 |
gctgttggagatcaagcactacatc |
5141223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 17 - 222
Target Start/End: Original strand, 5192597 - 5192790
Alignment:
| Q |
17 |
tgaagctgggtttgataattagttcccttttatattttgtgattttaatgttaattcaaaatcaaggatgtaacggatgcttagagaaagagagaatagg |
116 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||||||||||||| || |||||||| | || ||||||||||||||| ||||||||||||||||||||| |
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| T |
5192597 |
tgaagctgggtttgataaatagtttccttttatattttgtgacattgatgttaatgctaactcaaggatgtaacggttgcttagagaaagagagaatatc |
5192696 |
T |
|
| Q |
117 |
gttgttggagatcaagcactacatcttgtcacaacaagacgaaggagatgcttatgatatcgaacaattgggttcatgggttgatgatagagatagcaat |
216 |
Q |
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|||||||||||||| |||||| ||||||||||| || ||||||| |||| ||| ||||||||||||||||||||||||||||||||||| |
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| T |
5192697 |
attgttggagatcaaacactacttcttgtcacaa----ac--aggagatccttacaata------aattgggttcatgggttgatgatagagatagcaat |
5192784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 17 - 150
Target Start/End: Original strand, 5205311 - 5205444
Alignment:
| Q |
17 |
tgaagctgggtttgataattagttcccttttatattttgtgattttaatgttaattcaaaatcaaggatgtaacggatgcttagagaaagagagaatagg |
116 |
Q |
| |
|
||||| ||||||||||||||||||||||||| |||||| ||| || |||||||| |||||| ||||||||||||| || ||||||| |||||||| || |
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| T |
5205311 |
tgaagttgggtttgataattagttcccttttttattttatgacattgatgttaatacaaaatgaaggatgtaacggttgtgtagagaatgagagaatggg |
5205410 |
T |
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| Q |
117 |
gttgttggagatcaagcactacatcttgtcacaa |
150 |
Q |
| |
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|||||| ||||||||| | ||||| |||||||| |
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| T |
5205411 |
gttgttagagatcaagaagtacatagtgtcacaa |
5205444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 173 - 254
Target Start/End: Original strand, 5141267 - 5141348
Alignment:
| Q |
173 |
atatcgaacaattgggttcatgggttgatgatagagatagcaattgttgtgtttgggatagagtcgagtgctcttctggtca |
254 |
Q |
| |
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||||| || |||||| |||||||||||||||||||||||||||||||||||||||| |||||||| |||||| ||||||||| |
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| T |
5141267 |
atatcaaagaattggattcatgggttgatgatagagatagcaattgttgtgtttggaatagagtcaagtgcttttctggtca |
5141348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 167 - 246
Target Start/End: Original strand, 5165415 - 5165494
Alignment:
| Q |
167 |
cttatgatatcgaacaattgggttcatgggttgatgatagagatagcaattgttgtgtttgggatagagtcgagtgctct |
246 |
Q |
| |
|
||||| ||||| || ||||||||||||||||||||||||||||||||||||||||| |||| | |||||| |||||||| |
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|
| T |
5165415 |
cttataatatcaaagaattgggttcatgggttgatgatagagatagcaattgttgttcttggaaaagagtcaagtgctct |
5165494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 57
Target Start/End: Complemental strand, 7122067 - 7122027
Alignment:
| Q |
17 |
tgaagctgggtttgataattagttcccttttatattttgtg |
57 |
Q |
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| T |
7122067 |
tgaagctgggtttgatatttagttcccttttttattttgtg |
7122027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 246
Target Start/End: Original strand, 5205464 - 5205531
Alignment:
| Q |
182 |
aattgggttcatgggttgatgatagag---atagcaattgttgtgtttgggatagagtcgagtgctct |
246 |
Q |
| |
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||||| ||||||||||||||||||||| |||||||||||||| |||| | |||||| |||||||| |
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| T |
5205464 |
aattgagttcatgggttgatgatagagatcatagcaattgttgttcttggaaaagagtcaagtgctct |
5205531 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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