View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18984_high_1 (Length: 938)

Name: NF18984_high_1
Description: NF18984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18984_high_1
NF18984_high_1
[»] chr4 (38 HSPs)
chr4 (98-921)||(1547692-1548516)
chr4 (97-286)||(1552668-1552860)
chr4 (98-430)||(546920-547255)
chr4 (786-908)||(1552506-1552633)
chr4 (119-316)||(1600447-1600647)
chr4 (97-423)||(570357-570680)
chr4 (98-245)||(553486-553633)
chr4 (98-186)||(8187095-8187183)
chr4 (128-245)||(644867-644984)
chr4 (105-186)||(1519146-1519227)
chr4 (132-331)||(3438422-3438624)
chr4 (98-186)||(8184034-8184122)
chr4 (89-186)||(7225887-7225984)
chr4 (98-186)||(7307867-7307955)
chr4 (2-46)||(12121601-12121645)
chr4 (146-394)||(21834174-21834422)
chr4 (97-191)||(1524485-1524579)
chr4 (146-267)||(53761692-53761816)
chr4 (139-203)||(532237-532301)
chr4 (138-181)||(659756-659799)
chr4 (119-186)||(12121461-12121528)
chr4 (216-401)||(8186877-8187065)
chr4 (854-895)||(553759-553800)
chr4 (139-200)||(1537757-1537818)
chr4 (776-889)||(7225182-7225294)
chr4 (118-163)||(12116602-12116647)
chr4 (2-46)||(553390-553434)
chr4 (2-46)||(1489505-1489549)
chr4 (2-46)||(1508147-1508191)
chr4 (139-186)||(1489365-1489412)
chr4 (119-186)||(1513411-1513478)
chr4 (862-896)||(571338-571372)
chr4 (120-186)||(1545802-1545868)
chr4 (849-895)||(1755548-1755594)
chr4 (12-46)||(8184174-8184208)
chr4 (89-203)||(55505095-55505209)
chr4 (119-196)||(640943-641020)
chr4 (782-819)||(2367999-2368036)
[»] chr6 (29 HSPs)
chr6 (1-174)||(28934959-28935132)
chr6 (120-268)||(6432190-6432341)
chr6 (99-206)||(12102274-12102381)
chr6 (98-321)||(7119164-7119387)
chr6 (98-321)||(7131642-7131865)
chr6 (125-268)||(6394898-6395044)
chr6 (98-268)||(6402867-6403040)
chr6 (98-245)||(11936220-11936367)
chr6 (98-245)||(11948200-11948347)
chr6 (139-268)||(6416014-6416146)
chr6 (98-204)||(6423224-6423330)
chr6 (125-364)||(6426545-6426784)
chr6 (125-206)||(6410040-6410121)
chr6 (139-248)||(6589265-6589374)
chr6 (98-268)||(6594525-6594698)
chr6 (89-355)||(9411353-9411619)
chr6 (126-263)||(19632474-19632611)
chr6 (98-268)||(6585156-6585329)
chr6 (119-202)||(6596916-6596999)
chr6 (98-184)||(14802343-14802429)
chr6 (293-394)||(6432363-6432464)
chr6 (89-268)||(7994101-7994283)
chr6 (521-597)||(9411788-9411864)
chr6 (140-203)||(9410751-9410814)
chr6 (849-895)||(6417087-6417133)
chr6 (853-895)||(28935337-28935379)
chr6 (5-46)||(6415880-6415921)
chr6 (119-176)||(10579750-10579807)
chr6 (855-900)||(14809700-14809745)
[»] chr8 (16 HSPs)
chr8 (97-394)||(18315066-18315366)
chr8 (97-322)||(17636262-17636494)
chr8 (98-341)||(32151308-32151551)
chr8 (132-245)||(28246240-28246353)
chr8 (97-191)||(21235564-21235658)
chr8 (98-186)||(17628018-17628106)
chr8 (98-186)||(27922515-27922603)
chr8 (294-425)||(17627821-17627952)
chr8 (520-679)||(18314874-18315033)
chr8 (770-819)||(18314729-18314778)
chr8 (525-673)||(17635899-17636047)
chr8 (855-895)||(32151969-32152009)
chr8 (2-46)||(44736446-44736490)
chr8 (849-908)||(17642937-17642996)
chr8 (781-819)||(32151895-32151933)
chr8 (133-174)||(17643612-17643653)
[»] chr3 (9 HSPs)
chr3 (3-430)||(51113541-51113968)
chr3 (139-355)||(13470567-13470783)
chr3 (125-247)||(51120836-51120958)
chr3 (98-355)||(51764275-51764532)
chr3 (292-421)||(514494-514623)
chr3 (131-186)||(1657291-1657346)
chr3 (848-889)||(51763411-51763452)
chr3 (132-171)||(27005791-27005830)
chr3 (761-819)||(51763490-51763548)
[»] chr2 (3 HSPs)
chr2 (120-425)||(32785537-32785842)
chr2 (98-348)||(1037503-1037756)
chr2 (2-184)||(45245091-45245273)
[»] chr5 (6 HSPs)
chr5 (120-350)||(41889391-41889624)
chr5 (89-183)||(41901542-41901636)
chr5 (98-315)||(32267482-32267699)
chr5 (139-247)||(20478025-20478133)
chr5 (126-184)||(38267562-38267620)
chr5 (218-327)||(41901398-41901510)
[»] chr7 (3 HSPs)
chr7 (141-320)||(10614643-10614822)
chr7 (146-394)||(15091947-15092195)
chr7 (849-895)||(10615708-10615754)
[»] chr1 (5 HSPs)
chr1 (103-394)||(19468295-19468586)
chr1 (296-430)||(9581276-9581410)
chr1 (296-405)||(9586844-9586953)
chr1 (12-46)||(9580990-9581024)
chr1 (2-44)||(43634090-43634132)


Alignment Details
Target: chr4 (Bit Score: 749; Significance: 0; HSPs: 38)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 749; E-Value: 0
Query Start/End: Original strand, 98 - 921
Target Start/End: Complemental strand, 1548516 - 1547692
Alignment:
Q  98 acaactctttgaaatcacactgagtgcttcatcgtcaactcttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaa-gtag 196  Q
    |||||||||||| |||||| |||||| |||||| ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  1548516 acaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaaagtag 1548417  T
Q  197 cttcacttttaaactacgagctaagttcaactgtctaatcttacaacatcttaaaacttcacaaataccttcgtctgatatgccactgcaattaatcaaa 296  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1548416 cttcacttttaaactacgagctaagttcaactgtctaatcttacaacatcttaaaacttcacaaataccttcgtctgatatgccactgcaattaatcaaa 1548317  T
Q  297 tcaagcagttgcaaattggggaaaatcgaagaaaatattttgatggtttcatctcttaagcgtgaattgtgagtcaaacagagtgactttaattgaggtc 396  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1548316 tcaagcagttgcaaattggggaaaatcgaagaaaatattttgatggtttcatctcttaagcgtgaattgtgagtcaaacagagtgactttaattgaggtc 1548217  T
Q  397 ttacaacaaggtccatgaaagaattagaagtctcaaaactatttccaaagttgtattccattctgatctcactaagtgaaggactgttcttaacgaggtc 496  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1548216 ttacaacaaggtccatgaaagaattagaagtctcaaaactattttcaaagttgtattccattctgatctcactaagtgaaggactgttcttaacgaggtc 1548117  T
Q  497 aaacaacattgaacattctcggggttcaaaataattggtaaaggataaagaccttaatgttagtgcctcaccgagagcagaagcaataccaacgttggtt 596  Q
    ||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1548116 aaacaacatcgaacattcttggggttcaaaataattggtaaaggataaagaccttaatgttagtgcctcaccgagagcagaagcaataccaacgttggtt 1548017  T
Q  597 acttcaggacaccgaaatatgatggcttcttcaagacacttacaactcttgaacaagtgaaaaagaaattgatcgttgatgtacgaatgtttagtgagat 696  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| ||||||||| ||||| ||||||||||    
T  1548016 acttcaggacaccgaaatatgatggcttcttcaagacacttacaactgttaaacaagtgaaaaagaaattgattgttgatgtaggaatgcttagtgagat 1547917  T
Q  697 taacattctgaagattggaaagtgtcgataaaagagtctttaccctatcgaacatactattctcgcaatatgaggggtaactacggtcgagttcttcgag 796  Q
    |||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  1547916 taaccttctgaagattggaaagtgccgataaaagagtctttaccctatcgaacatactattctcgcaatatgaggggtaactaaggtcgagttcttcgag 1547817  T
Q  797 aaaagggaaacaatcggcaatgatcaacatgtcaatgctttggggacgggaaatgtgggaacatgtgagagatgtcaaagttgtaatgttttgggagaat 896  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1547816 aaaagggaaacaatcggcaatgatcaacatgtcaatgctttggggacgggaaatgtgggaacatgtgagagatgtcaaagttgtaatgttttgggagaat 1547717  T
Q  897 tcttttaacccaatcatgggaattc 921  Q
    |||||||||||||||||||||||||    
T  1547716 tcttttaacccaatcatgggaattc 1547692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 111; E-Value: 2e-55
Query Start/End: Original strand, 97 - 286
Target Start/End: Complemental strand, 1552860 - 1552668
Alignment:
Q  97 gacaactctttgaaatcacactgagtgcttcatcgtcaactcttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtag 196  Q
    ||||| ||||||| |||||| |||||| |||||| | ||   ||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||    
T  1552860 gacaattctttgatatcacattgagtgtttcatcattaatatttgtatgtgacaaattcaacacttccagtttgggaatttcaaagttcagtccaagtag 1552761  T
Q  197 cttcactttta---aactacgagctaagttcaactgtctaatcttacaacatcttaaaacttcacaaataccttcgtctgatatgccactgca 286  Q
    |||| ||| ||   ||||| | ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  1552760 cttcccttctataaaactatgggctaagttcaaatgtctaatcttacaacatcttaaaacttcacaaataccttcgtctgatatgccagtgca 1552668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 98 - 430
Target Start/End: Original strand, 546920 - 547255
Alignment:
Q  98 acaactctttgaaatcacactgagtgcttcatcgtcaactcttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagc 197  Q
    |||||||||||| ||||||  ||||| |||||| |  ||  ||||| |||||||||||| |||||||| ||| |||| ||||||||||| ||||| |||     
T  546920 acaactctttgagatcacatagagtgtttcatcattgacaattgtacgtgacaagttcaccacctccaatttaggaacttcaaagttcattccaaatagg 547019  T
Q  198 ttcacttttaaactacgagctaagttcaactgtctaatcttacaacatct---taaaacttcacaaataccttcgtctgatatgccactgcaattaatca 294  Q
    ||||||  ||||| |   | ||||||||| || || ||||||||||||||   |||||| ||||||||||  || || ||||||  ||  |||| | | |    
T  547020 ttcactactaaacaattggataagttcaaatgccttatcttacaacatctccttaaaacatcacaaatactgtcttcagatatgttacgacaataactta 547119  T
Q  295 aatcaagcagttgcaaattggggaaaatcgaagaaaatattttgatggtttcatctcttaagcgtgaattgtgagtcaaacagagtgactttaattgagg 394  Q
    ||||||||||||||||||||||||| || |||| ||| ||||||||| |||||||||||| || |||||| | || ||||  ||| ||||| ||||||||    
T  547120 aatcaagcagttgcaaattggggaacatggaaggaaacattttgatgctttcatctcttatgcatgaatttttagccaaatggagagacttcaattgagg 547219  T
Q  395 tcttacaacaaggtccatgaaagaattagaagtctc 430  Q
     ||||||||||  ||| |||||||||||||| ||||    
T  547220 gcttacaacaaaatccttgaaagaattagaattctc 547255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 786 - 908
Target Start/End: Complemental strand, 1552633 - 1552506
Alignment:
Q  786 agttcttcgagaaaagggaaacaatcggcaatgatcaacatgtcaatgctttggggacgggaaatgtgggaacatgtgagagatgtcaaagttgta---- 881  Q
    |||||||| ||||||||||||||||||||||||||||||||| || |||||||||||| | ||||||||||||| |||||||| ||||||||||||        
T  1552633 agttcttcaagaaaagggaaacaatcggcaatgatcaacatggcactgctttggggaccgtaaatgtgggaacacgtgagagaggtcaaagttgtaatgt 1552534  T
Q  882 -atgttttgggagaattcttttaaccca 908  Q
     |||||||||||||| ||||||||||||    
T  1552533 aatgttttgggagaaatcttttaaccca 1552506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 119 - 316
Target Start/End: Original strand, 1600447 - 1600647
Alignment:
Q  119 gagtgcttcatcgtcaactcttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcacttttaaactacgagct 218  Q
    |||||||||||||||||| ||||||| ||||||||||||||||||||||||  ||| ||||||||||| |||  | ||||||| | || |||   | |||    
T  1600447 gagtgcttcatcgtcaacccttgtatatgacaagttcaacacctccagtttaagaacttcaaagttcattcctcgcagcttcattattgaacactgggct 1600546  T
Q  219 aagttcaactgtctaatcttacaacat---cttaaaacttcacaaataccttcgtctgatatgccactgcaattaatcaaatcaagcagttgcaaattgg 315  Q
    |||||||| |||||||| ||| || ||   |||||||||| |||||||||||| || ||||||  | ||||| |  ||||||||||||||||||||||||    
T  1600547 aagttcaaatgtctaattttagaaaatctccttaaaacttgacaaataccttcttcagatatgttaatgcaactgctcaaatcaagcagttgcaaattgg 1600646  T
Q  316 g 316  Q
    |    
T  1600647 g 1600647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 97 - 423
Target Start/End: Original strand, 570357 - 570680
Alignment:
Q  97 gacaactctttgaaatcacactgagtgcttcatcgtcaactcttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtag 196  Q
    |||||||||||||||||| |  |||| |||| |  ||||||| ||||| |||||||||||||||||| |||||| ||| ||||||||||| |||| | ||    
T  570357 gacaactctttgaaatcagatagagttcttcgttatcaactcctgtatatgacaagttcaacacctcgagtttgagaacttcaaagttcaatccacgcag 570456  T
Q  197 cttcacttttaaactacgagctaagttcaactgtctaatcttacaacatcttaaaacttcacaaataccttcgtctgatatgccactgcaattaatcaaa 296  Q
     ||||||||| | |   ||||||||||||| || ||||  ||||||||||||||||||| ||||||||  |||   |||||   | |||||| | | |||    
T  570457 tttcacttttgagcagtgagctaagttcaaatgcctaagtttacaacatcttaaaacttgacaaatactatcg---gatatctgattgcaataacttaaa 570553  T
Q  297 tcaagcagttgcaaattggggaaaatcgaagaaaatattttgatggtttcatctcttaagcgtgaattgtgagtcaaacagagtgactttaattgaggtc 396  Q
    ||||| |  ||||||||||||||||| |||| ||| |||   ||| ||||||| ||||| | || |||| |||||||  | || ||||| |||||| |      
T  570554 tcaagtatctgcaaattggggaaaatagaagcaaacattaaaatgttttcatcacttaaccatgtattgcgagtcaagaatagagacttcaattgatggt 570653  T
Q  397 ttacaacaaggtccatgaaagaattag 423  Q
    |||||||||  |||||  |||||||||    
T  570654 ttacaacaaattccattgaagaattag 570680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 98 - 245
Target Start/End: Original strand, 553486 - 553633
Alignment:
Q  98 acaactctttgaaatcacactgagtgcttcatcgtcaactcttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagc 197  Q
    ||||||||||||||||||| | ||||||||||| ||||||||||||  ||||||||||||||||||||||||| ||| || |||||||| |  | ||| |    
T  553486 acaactctttgaaatcacattaagtgcttcatcatcaactcttgtaaatgacaagttcaacacctccagtttgagaactttaaagttcaatgtacgtaac 553585  T
Q  198 ttcacttttaaactacgagctaagttcaactgtctaatcttacaacat 245  Q
    |||||| || |||  || | ||||||||| |||||||| |||||||||    
T  553586 ttcactcttgaacagcgggttaagttcaaatgtctaatgttacaacat 553633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 98 - 186
Target Start/End: Complemental strand, 8187183 - 8187095
Alignment:
Q  98 acaactctttgaaatcacactgagtgcttcatcgtcaactcttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttca 186  Q
    |||||||||||||||  ||   |||| || ||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  8187183 acaactctttgaaattgcataaagtgttttatcatcaactcttgtatgtgacaagttcaacacctccagtttggaaatttcaaagttca 8187095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 128 - 245
Target Start/End: Original strand, 644867 - 644984
Alignment:
Q  128 atcgtcaactcttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcacttttaaactacgagctaagttcaac 227  Q
    ||||| ||||||||||  ||||||||  ||||||||||||||||||| ||||||||||| |  ||||||||||| | || |||  |||| ||| |||||     
T  644867 atcgtaaactcttgtaaatgacaagtctaacacctccagtttgggaacttcaaagttcaatgtaagtagcttcagtcttgaacagcgagttaaattcaaa 644966  T
Q  228 tgtctaatcttacaacat 245  Q
    |||||||| |||||||||    
T  644967 tgtctaatgttacaacat 644984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 105 - 186
Target Start/End: Complemental strand, 1519227 - 1519146
Alignment:
Q  105 tttgaaatcacactgagtgcttcatcgtcaactcttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttca 186  Q
    ||||| ||||||  ||||||||  || ||||| |||||||||||||||||||||||||| |||||||||| |||||||||||    
T  1519227 tttgagatcacatagagtgcttattcatcaacccttgtatgtgacaagttcaacacctctagtttgggaacttcaaagttca 1519146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 132 - 331
Target Start/End: Complemental strand, 3438624 - 3438422
Alignment:
Q  132 tcaactcttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcacttttaaactacgagctaagttcaactgtc 231  Q
    ||||||||||||||||||||| |||| ||||||| ||| | ||  |||||||||| | ||   |  ||||||  ||||| || |||||||||||| ||||    
T  3438624 tcaactcttgtatgtgacaagctcaatacctccaattttgaaacatcaaagttcattgcacacaaattcactcctaaacaaccagctaagttcaaatgtc 3438525  T
Q  232 taatcttacaacat---cttaaaacttcacaaataccttcgtctgatatgccactgcaattaatcaaatcaagcagttgcaaattggggaaaatcgaaga 328  Q
    ||||||||||||||   |||||||||| |  || ||||||||| ||||||     ||| |   ||| ||||||||| ||||||||||||||||| |||||    
T  3438524 taatcttacaacatctccttaaaacttgaataacaccttcgtcagatatgtagtcgcattctctcacatcaagcagctgcaaattggggaaaatagaaga 3438425  T
Q  329 aaa 331  Q
    |||    
T  3438424 aaa 3438422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 98 - 186
Target Start/End: Complemental strand, 8184122 - 8184034
Alignment:
Q  98 acaactctttgaaatcacactgagtgcttcatcgtcaactcttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttca 186  Q
    |||||||||||| ||  ||  |||||||  ||| |||||||||||||||||||||||||||||||| ||||| |||| |||||||||||    
T  8184122 acaactctttgagattgcatagagtgctatatcatcaactcttgtatgtgacaagttcaacacctctagtttcggaacttcaaagttca 8184034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 89 - 186
Target Start/End: Complemental strand, 7225984 - 7225887
Alignment:
Q  89 aagtccatgacaactctttgaaatcacactgagtgcttcatcgtcaactcttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttca 186  Q
    |||||||  |||||||||||| |||||||  ||| |||  || |||||||||||||||||||||||||| ||||||| || | ||| |||||||||||    
T  7225984 aagtccacaacaactctttgatatcacacgaagtcctttgtcatcaactcttgtatgtgacaagttcaagacctccaattcgagaacttcaaagttca 7225887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 98 - 186
Target Start/End: Original strand, 7307867 - 7307955
Alignment:
Q  98 acaactctttgaaatcacactgagtgcttcatcgtcaactcttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttca 186  Q
    |||||||||||| |||| ||  ||||||||||| ||||||  ||||| |||||||||||| ||||||| |||||||| || ||||||||    
T  7307867 acaactctttgagatcatacgtagtgcttcatcatcaacttctgtatatgacaagttcaatacctccaatttgggaactttaaagttca 7307955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 12121645 - 12121601
Alignment:
Q  2 gatctctcttagttgtgtgcaattttctaccacatgcttcactcc 46  Q
    ||||||||||||||||||||| |||||||||||||||||||||||    
T  12121645 gatctctcttagttgtgtgcatttttctaccacatgcttcactcc 12121601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 146 - 394
Target Start/End: Complemental strand, 21834422 - 21834174
Alignment:
Q  146 tgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcacttttaaactacgagctaagttcaactgtctaatcttacaacat 245  Q
    |||||||| |||||||||||| ||||||| | ||||||| |  | | |||||||||||||  ||| ||  | ||||||||| ||  ||||||||||||||    
T  21834422 tgacaagtccaacacctccagcttgggaactacaaagttgatactatgtagcttcactttataacaacctgataagttcaaatgcttaatcttacaacat 21834323  T
Q  246 ---cttaaaacttcacaaataccttcgtctgatatgccactgcaattaatcaaatcaagcagttgcaaattggggaaaatcgaagaaaatattttgatgg 342  Q
       ||||||||||| |||||||||   ||||||||     || ||  | ||||||||||||| || |||||||||||||| |||| ||| ||| ||||      
T  21834322 ttccttaaaacttcgcaaatacct---tctgatatctgtgtggaagaagtcaaatcaagcagctgtaaattggggaaaattgaagcaaacattatgattc 21834226  T
Q  343 tttcatctcttaagcgtgaattgtgagtcaaacagagtgactttaattgagg 394  Q
    |||||||  |||| | ||||||| |   |||| |||| ||||||||||||||    
T  21834225 tttcatcatttaaccatgaattgcggcccaaaaagagagactttaattgagg 21834174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 97 - 191
Target Start/End: Complemental strand, 1524579 - 1524485
Alignment:
Q  97 gacaactctttgaaatcacactgagtgcttcatcgtcaactcttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtcca 191  Q
    ||||||||| ||| |||| |  ||||| |||||| ||||| |||||| ||||||| |||||||||||||  ||||||| ||||||||||| ||||    
T  1524579 gacaactctgtgagatcatatagagtgtttcatcatcaacacttgtacgtgacaaattcaacacctccaaattgggaacttcaaagttcattcca 1524485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 146 - 267
Target Start/End: Complemental strand, 53761816 - 53761692
Alignment:
Q  146 tgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcacttttaaactacgagctaagttcaactgtctaatcttacaacat 245  Q
    ||||||||||||| |||| || ||||||| | ||||||||| ||||| |||||||||| || |||     ||||||||||| || ||||| |||||||||    
T  53761816 tgacaagttcaacgcctctagcttgggaactacaaagttcattccaattagcttcactcttgaacactcggctaagttcaaatgcctaatgttacaacat 53761717  T
Q  246 ---cttaaaacttcacaaatacctt 267  Q
       |||||||||| |||||||||||    
T  53761716 ctccttaaaacttgacaaatacctt 53761692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 139 - 203
Target Start/End: Original strand, 532237 - 532301
Alignment:
Q  139 ttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcact 203  Q
    |||||| |||||||||||||||||| || ||||| | ||||||||||| ||||||||| ||||||    
T  532237 ttgtatatgacaagttcaacacctctagcttggggacttcaaagttcattccaagtagattcact 532301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 138 - 181
Target Start/End: Original strand, 659756 - 659799
Alignment:
Q  138 cttgtatgtgacaagttcaacacctccagtttgggaatttcaaa 181  Q
    |||||||||||||||||||||||||| |||||||||| ||||||    
T  659756 cttgtatgtgacaagttcaacacctctagtttgggaacttcaaa 659799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 119 - 186
Target Start/End: Complemental strand, 12121528 - 12121461
Alignment:
Q  119 gagtgcttcatcgtcaactcttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttca 186  Q
    ||||| |||||| |||||  |||||| ||||||||||||||| || |||||||||| |||||||||||    
T  12121528 gagtgtttcatcatcaacatttgtatatgacaagttcaacacttctagtttgggaacttcaaagttca 12121461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 216 - 401
Target Start/End: Complemental strand, 8187065 - 8186877
Alignment:
Q  216 gctaagttcaactgtctaatcttacaacatctt---aaaacttcacaaataccttcgtctgatatgccactgcaattaatcaaatcaagcagttgcaaat 312  Q
    ||||||||||| |  ||||||| |||||||||    ||||||| |||||||||||| || |||||| ||  ||||| | ||||||||||||  |||||||    
T  8187065 gctaagttcaaatccctaatctcacaacatctcttcaaaacttgacaaataccttcttcagatatgtcatagcaatgactcaaatcaagcaactgcaaat 8186966  T
Q  313 tggggaaaatcgaagaaaatattttgatggtttcatctcttaagcgtgaattgtgagtcaaacagagtgactttaattgaggtcttaca 401  Q
    ||||||| |  ||||| || |||| || | ||||||  ||||| |   |||||| | |||||| ||| ||||| | |||||||||||||    
T  8186965 tggggaataaggaagataacatttcgaggttttcattacttaaccaacaattgtaaatcaaactgagagacttcagttgaggtcttaca 8186877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 854 - 895
Target Start/End: Original strand, 553759 - 553800
Alignment:
Q  854 ggaacatgtgagagatgtcaaagttgtaatgttttgggagaa 895  Q
    |||||| |||||||| ||||||||||||||||||||||||||    
T  553759 ggaacaggtgagagaggtcaaagttgtaatgttttgggagaa 553800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 200
Target Start/End: Complemental strand, 1537818 - 1537757
Alignment:
Q  139 ttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttc 200  Q
    |||||| ||||||||||||||| || |||||||||| ||||||||||| |||| | ||||||    
T  1537818 ttgtatatgacaagttcaacacttctagtttgggaacttcaaagttcattccatgcagcttc 1537757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 776 - 889
Target Start/End: Complemental strand, 7225294 - 7225182
Alignment:
Q  776 actacggtcgagttcttcgagaaaagggaaacaatcggcaatgatcaacatgtcaatgctttggggacgggaaatgtgggaacatgtgagagatgtcaaa 875  Q
    |||| |||||||||||||||| |||||||||||||| || ||||  ||||||||| ||||   |  |    |||||| ||||||||||||||| ||||||    
T  7225294 actaaggtcgagttcttcgagcaaagggaaacaatccgcgatgaggaacatgtcagtgctagtgacagaataaatgt-ggaacatgtgagagaggtcaaa 7225196  T
Q  876 gttgtaatgttttg 889  Q
    |||||||| |||||    
T  7225195 gttgtaatattttg 7225182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 118 - 163
Target Start/End: Complemental strand, 12116647 - 12116602
Alignment:
Q  118 tgagtgcttcatcgtcaactcttgtatgtgacaagttcaacacctc 163  Q
    |||||| |||||| ||||| ||||||||||||||||||||||||||    
T  12116647 tgagtgattcatcatcaacacttgtatgtgacaagttcaacacctc 12116602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 553390 - 553434
Alignment:
Q  2 gatctctcttagttgtgtgcaattttctaccacatgcttcactcc 46  Q
    ||||||||| ||||||||||| |||||||||||||| ||||||||    
T  553390 gatctctctaagttgtgtgcagttttctaccacatgattcactcc 553434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 1489549 - 1489505
Alignment:
Q  2 gatctctcttagttgtgtgcaattttctaccacatgcttcactcc 46  Q
    ||||||||||||||||| ||| ||||||| |||||||||||||||    
T  1489549 gatctctcttagttgtgcgcatttttctagcacatgcttcactcc 1489505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 1508191 - 1508147
Alignment:
Q  2 gatctctcttagttgtgtgcaattttctaccacatgcttcactcc 46  Q
    ||||||||||||||||||||| ||||||| | |||||||||||||    
T  1508191 gatctctcttagttgtgtgcatttttctagcgcatgcttcactcc 1508147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 186
Target Start/End: Complemental strand, 1489412 - 1489365
Alignment:
Q  139 ttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttca 186  Q
    |||||| ||||||||||||||| || |||||||||| |||||||||||    
T  1489412 ttgtatatgacaagttcaacacttctagtttgggaacttcaaagttca 1489365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 186
Target Start/End: Complemental strand, 1513478 - 1513411
Alignment:
Q  119 gagtgcttcatcgtcaactcttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttca 186  Q
    ||||| |||||| |||||  |||||  ||||||||||||||| || |||||||||| |||||||||||    
T  1513478 gagtgtttcatcatcaacatttgtaaatgacaagttcaacacttctagtttgggaacttcaaagttca 1513411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 862 - 896
Target Start/End: Original strand, 571338 - 571372
Alignment:
Q  862 tgagagatgtcaaagttgtaatgttttgggagaat 896  Q
    |||||||||||||||||||||| ||||||||||||    
T  571338 tgagagatgtcaaagttgtaatattttgggagaat 571372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 120 - 186
Target Start/End: Original strand, 1545802 - 1545868
Alignment:
Q  120 agtgcttcatcgtcaactcttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttca 186  Q
    |||| |||||| ||||||||||||    |||||||||||||||||||||| |||| || ||||||||    
T  1545802 agtgtttcatcatcaactcttgtaaacaacaagttcaacacctccagtttaggaactttaaagttca 1545868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 849 - 895
Target Start/End: Original strand, 1755548 - 1755594
Alignment:
Q  849 atgtgggaacatgtgagagatgtcaaagttgtaatgttttgggagaa 895  Q
    |||| ||||||||||||||| |||||||||||||| ||||| |||||    
T  1755548 atgttggaacatgtgagagaggtcaaagttgtaatcttttgagagaa 1755594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 12 - 46
Target Start/End: Complemental strand, 8184208 - 8184174
Alignment:
Q  12 agttgtgtgcaattttctaccacatgcttcactcc 46  Q
    ||||||||||||||||||| |||||||||||||||    
T  8184208 agttgtgtgcaattttctagcacatgcttcactcc 8184174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 89 - 203
Target Start/End: Complemental strand, 55505209 - 55505095
Alignment:
Q  89 aagtccatgacaactctttgaaatcacactgagtgcttcatcgtcaactcttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagt 188  Q
    ||||||| ||||| |||||||  |||||   |||| | ||||||||||  |||||| |||||||||||||||||| |||| ||| | |  |||||||| |    
T  55505209 aagtccacgacaattctttgaggtcacataaagtgttccatcgtcaacctttgtatatgacaagttcaacacctctagttgggggactctaaagttcatt 55505110  T
Q  189 ccaagtagcttcact 203  Q
    |||| ||| ||||||    
T  55505109 ccaattaggttcact 55505095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 196
Target Start/End: Original strand, 640943 - 641020
Alignment:
Q  119 gagtgcttcatcgtcaactcttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtag 196  Q
    ||||| |||||| |||||  |||||| |||||||||||||||||||| | | || | |||||| |||| |||||||||    
T  640943 gagtgtttcatcatcaacgtttgtatctgacaagttcaacacctccaatattggtagttcaaatttcattccaagtag 641020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 782 - 819
Target Start/End: Complemental strand, 2368036 - 2367999
Alignment:
Q  782 gtcgagttcttcgagaaaagggaaacaatcggcaatga 819  Q
    ||||||||||||||| |||||||||||||| |||||||    
T  2368036 gtcgagttcttcgagtaaagggaaacaatcagcaatga 2367999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 141; Significance: 2e-73; HSPs: 29)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 141; E-Value: 2e-73
Query Start/End: Original strand, 1 - 174
Target Start/End: Original strand, 28934959 - 28935132
Alignment:
Q  1 agatctctcttagttgtgtgcaattttctaccacatgcttcactccnnnnnnngtaacacgatcgcagtttaacagcaacaggcgcataagtccatgaca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||       ||||||| |||||||||||||||||||||||||||||||||||||||    
T  28934959 agatctctcttagttgtgtgcaattttctaccacatgcttcactcctttttttgtaacactatcgcagtttaacagcaacaggcgcataagtccatgaca 28935058  T
Q  101 actctttgaaatcacactgagtgcttcatcgtcaactcttgtatgtgacaagttcaacacctccagtttgggaa 174  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||    
T  28935059 actctttgaaatcacactgagtgcttcatcgtcaactcttgtatgtgacaagttcaacacctcgagttggggaa 28935132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 120 - 268
Target Start/End: Original strand, 6432190 - 6432341
Alignment:
Q  120 agtgcttcatcgtcaactcttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcacttttaaactacgagcta 219  Q
    |||| |||||| ||||| ||||||| ||||||||||||||||| ||| ||||||| ||||||||||| |||| ||||||||||||||| || |   ||||    
T  6432190 agtgtttcatcatcaacgcttgtatttgacaagttcaacaccttcagcttgggaacttcaaagttcattccatgtagcttcacttttatacaataggcta 6432289  T
Q  220 agttcaactgtctaatcttacaacat---cttaaaacttcacaaataccttc 268  Q
    ||||||| ||| |||  |||||||||   |||||||||| ||||||||||||    
T  6432290 agttcaaatgtttaagtttacaacatctccttaaaacttgacaaataccttc 6432341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 99 - 206
Target Start/End: Original strand, 12102274 - 12102381
Alignment:
Q  99 caactctttgaaatcacactgagtgcttcatcgtcaactcttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagct 198  Q
    |||||||||||||||| |  |||| |||| |  ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||| | || |    
T  12102274 caactctttgaaatcagatagagttcttcgttatcaactcatgtatgtgacaagttcaacacctccagtttgggaacttcaaagttcaatccatgcagtt 12102373  T
Q  199 tcactttt 206  Q
    ||||||||    
T  12102374 tcactttt 12102381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 98 - 321
Target Start/End: Original strand, 7119164 - 7119387
Alignment:
Q  98 acaactctttgaaatcacactgagtgcttcatcgtcaactcttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagc 197  Q
    |||| |||| || ||||||  ||||| |||||| |||||  | |||| ||||||||||||||||||||| | | |||   ||||||||| ||||||||||    
T  7119164 acaattcttcgagatcacatggagtgtttcatcatcaaccttcgtatctgacaagttcaacacctccagctggtgaacaacaaagttcattccaagtagc 7119263  T
Q  198 ttcacttttaaactacgagctaagttcaactgtctaatcttacaacatct---taaaacttcacaaataccttcgtctgatatgccactgcaattaatca 294  Q
    |||||| || |||   | ||||||||||| ||| |||||||| |||||||   |||||||| ||||||||||||    ||||||  | ||||| || |||    
T  7119264 ttcactcttgaacagtgggctaagttcaaatgtttaatcttagaacatctccttaaaacttgacaaataccttca---gatatgttattgcaagtattca 7119360  T
Q  295 aatcaagcagttgcaaattggggaaaa 321  Q
    ||||||| ||||| |||||||||||||    
T  7119361 aatcaagaagttgtaaattggggaaaa 7119387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 98 - 321
Target Start/End: Original strand, 7131642 - 7131865
Alignment:
Q  98 acaactctttgaaatcacactgagtgcttcatcgtcaactcttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagc 197  Q
    |||| |||| || ||||||  ||||| |||||| |||||  | |||| ||||||||||||||||||||| | | |||   ||||||||| ||||||||||    
T  7131642 acaattcttcgagatcacatggagtgtttcatcatcaaccttcgtatctgacaagttcaacacctccagctggcgaacaacaaagttcattccaagtagc 7131741  T
Q  198 ttcacttttaaactacgagctaagttcaactgtctaatcttacaacatct---taaaacttcacaaataccttcgtctgatatgccactgcaattaatca 294  Q
    |||||| || |||   | ||||||||||| ||| |||||||| |||||||   |||||||| ||||||||||||    ||||||  | ||||| || |||    
T  7131742 ttcactcttgaacagtgggctaagttcaaatgtttaatcttagaacatctccttaaaacttgacaaataccttca---gatatgttattgcaagtattca 7131838  T
Q  295 aatcaagcagttgcaaattggggaaaa 321  Q
    ||||||| ||||| |||||||||||||    
T  7131839 aatcaagaagttgtaaattggggaaaa 7131865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 125 - 268
Target Start/End: Original strand, 6394898 - 6395044
Alignment:
Q  125 ttcatcgtcaactcttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcacttttaaactacgagctaagttc 224  Q
    |||||| ||||| ||||||| ||||||||||||||||||||| | ||||| | ||||||||| |||| |||| ||||||||| |||    ||||||||||    
T  6394898 ttcatcatcaacgcttgtatttgacaagttcaacacctccagctcgggaactgcaaagttcattccatgtagtttcacttttgaacagaaagctaagttc 6394997  T
Q  225 aactgtctaatcttacaacat---cttaaaacttcacaaataccttc 268  Q
    || ||| ||| ||||||||||    ||||||||| ||||||||||||    
T  6394998 aaatgtttaagcttacaacatttctttaaaacttgacaaataccttc 6395044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 98 - 268
Target Start/End: Original strand, 6402867 - 6403040
Alignment:
Q  98 acaactctttgaaatcacactgagtgcttcatcgtcaactcttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagc 197  Q
    |||| ||||||| ||||||  ||||| |||||| |||||  | |||| ||||||||||||||| || |||| ||||| | ||||||| | ||||||||||    
T  6402867 acaattctttgagatcacatagagtgtttcatcatcaaccttcgtatctgacaagttcaacacttctagttggggaactgcaaagtttattccaagtagc 6402966  T
Q  198 ttcacttttaaactacgagctaagttcaactgtctaatcttacaacat---cttaaaacttcacaaataccttc 268  Q
    |||||| || |||  | || ||||||||| || ||||| |||||||||   |||||||||| ||||||||||||    
T  6402967 ttcactcttgaacacccagttaagttcaaatgcctaatgttacaacatctccttaaaacttgacaaataccttc 6403040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 98 - 245
Target Start/End: Complemental strand, 11936367 - 11936220
Alignment:
Q  98 acaactctttgaaatcacactgagtgcttcatcgtcaactcttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagc 197  Q
    |||||||||||| |||  |  ||||| || ||||||||||||||||  |||||||| |||||||||||||||||||| ||||||||||| |  | |||||    
T  11936367 acaactctttgagatccaatagagtgatttatcgtcaactcttgtaaatgacaagtccaacacctccagtttgggaacttcaaagttcaatgtacgtagc 11936268  T
Q  198 ttcacttttaaactacgagctaagttcaactgtctaatcttacaacat 245  Q
    |||| | || |||  |||| ||| ||||| |||||||| |||||||||    
T  11936267 ttcagtcttgaacagcgagttaaattcaaatgtctaatgttacaacat 11936220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 98 - 245
Target Start/End: Complemental strand, 11948347 - 11948200
Alignment:
Q  98 acaactctttgaaatcacactgagtgcttcatcgtcaactcttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagc 197  Q
    |||||||||||| |||  |  ||||| || ||||||||||||||||  |||||||| |||||||||||||||||||| ||||||||||| |  | |||||    
T  11948347 acaactctttgagatccaatagagtgatttatcgtcaactcttgtaaatgacaagtccaacacctccagtttgggaacttcaaagttcaatgtacgtagc 11948248  T
Q  198 ttcacttttaaactacgagctaagttcaactgtctaatcttacaacat 245  Q
    |||| | || |||  |||| ||| ||||| |||||||| |||||||||    
T  11948247 ttcagtcttgaacagcgagttaaattcaaatgtctaatgttacaacat 11948200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 139 - 268
Target Start/End: Original strand, 6416014 - 6416146
Alignment:
Q  139 ttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcacttttaaactacgagctaagttcaactgtctaatctt 238  Q
    |||||| ||||||||||||||||||||| ||||||| | |||||| || |||| ||||||||||||||  || |   ||||||||||| || | ||||||    
T  6416014 ttgtatttgacaagttcaacacctccaggttgggaactacaaagtccattccatgtagcttcacttttttacaaaaggctaagttcaaatgcccaatctt 6416113  T
Q  239 acaacat---cttaaaacttcacaaataccttc 268  Q
    |||||||    ||||||||| ||||||||||||    
T  6416114 acaacatatctttaaaacttgacaaataccttc 6416146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 98 - 204
Target Start/End: Original strand, 6423224 - 6423330
Alignment:
Q  98 acaactctttgaaatcacactgagtgcttcatcgtcaactcttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagc 197  Q
    |||||||||||| ||| ||  ||||| || ||||  ||||||||||| ||||||||||||||||||||| ||||||| || |||||||| | || |||||    
T  6423224 acaactctttgagatcgcatagagtgttttatcgctaactcttgtatttgacaagttcaacacctccagcttgggaacttaaaagttcattgcacgtagc 6423323  T
Q  198 ttcactt 204  Q
    |||||||    
T  6423324 ttcactt 6423330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 125 - 364
Target Start/End: Original strand, 6426545 - 6426784
Alignment:
Q  125 ttcatcgtcaactcttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcacttttaaactacgagctaagttc 224  Q
    |||||| ||||  ||||| | |||||| |||||||||||||| | ||||| | ||||||||| |||| |||| ||||| ||| |||    ||||||||||    
T  6426545 ttcatcatcaatgcttgtgtttgacaaattcaacacctccagctcgggaactgcaaagttcattccatgtagtttcacgtttgaacagaaagctaagttc 6426644  T
Q  225 aactgtctaatcttacaacat---cttaaaacttcacaaataccttcgtctgatatgccactgcaattaatcaaatcaagcagttgcaaattggggaaaa 321  Q
    || ||| ||| ||||||||||   |||||||||||||||||||||   || |||||  ||| ||||    |||||||||| || || |||||||||||||    
T  6426645 aaatgtttaagcttacaacatttccttaaaacttcacaaatacct---tcagatatttcacggcaaaccttcaaatcaagtagctgtaaattggggaaaa 6426741  T
Q  322 tcgaagaaaatattttgatggtttcatctcttaagcgtgaatt 364  Q
    | |||| | | ||| ||||| ||||||| ||||| | ||||||    
T  6426742 tggaagcatacattatgatgatttcatcacttaaccatgaatt 6426784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 125 - 206
Target Start/End: Original strand, 6410040 - 6410121
Alignment:
Q  125 ttcatcgtcaactcttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcactttt 206  Q
    |||||| ||||| ||||||| |||| |||||||||||| ||| ||||||| ||||||||||| |||| ||||||||||||||    
T  6410040 ttcatcatcaacgcttgtatttgactagttcaacaccttcagcttgggaacttcaaagttcattccatgtagcttcactttt 6410121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 139 - 248
Target Start/End: Complemental strand, 6589374 - 6589265
Alignment:
Q  139 ttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcacttttaaactacgagctaagttcaactgtctaatctt 238  Q
    |||||| |||||||||||||||||||||  |||||| | ||||||||| ||||||||||||||||||   ||     ||||||||||| || ||||||||    
T  6589374 ttgtatttgacaagttcaacacctccagcatgggaactacaaagttcattccaagtagcttcactttcttacagaaggctaagttcaaatgcctaatctt 6589275  T
Q  239 acaacatctt 248  Q
    ||||||||||    
T  6589274 acaacatctt 6589265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 98 - 268
Target Start/End: Complemental strand, 6594698 - 6594525
Alignment:
Q  98 acaactctttgaaatcacactgagtgcttcatcgtcaactcttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagc 197  Q
    |||| ||||||| |||||||  ||||  ||||| |||||   ||||| |||||||| |||||||||||||||||||| |  |||||| | |||| |||||    
T  6594698 acaattctttgagatcacacgtagtgtctcatcatcaacctctgtatttgacaagtacaacacctccagtttgggaactaaaaagtttattccatgtagc 6594599  T
Q  198 ttcacttttaaactacgagctaagttcaactgtctaatcttacaacat---cttaaaacttcacaaataccttc 268  Q
    |||||| || |||  |  | ||||| ||| ||| |||||||| |||||   |||||||||| ||||||||||||    
T  6594598 ttcactcttgaacacccggataagtacaaatgtgtaatcttataacatctccttaaaacttgacaaataccttc 6594525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 89 - 355
Target Start/End: Original strand, 9411353 - 9411619
Alignment:
Q  89 aagtccatgacaactctttgaaatcacactgagtgcttcatcgtcaactcttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagt 188  Q
    ||||||| ||||| ||||||| ||| ||  ||||  |||||||  ||| | ||||| ||||||||||||||||||||| |||||||  |||||||||| |    
T  9411353 aagtccacgacaattctttgagatctcatagagtatttcatcgaaaacacctgtatatgacaagttcaacacctccagcttgggaacctcaaagttcaat 9411452  T
Q  189 ccaagtagcttcacttttaaactacgagctaagttcaactgtctaatcttacaacatct---taaaacttcacaaataccttcgtctgatatgccactgc 285  Q
    |||   ||| ||||     || ||| ||||| |||||| |||||||| |||| ||||||   |||||| |   ||||||||||||  ||||||  ||  |    
T  9411453 ccatcgagcgtcacac---aagtacaagctaggttcaaatgtctaatgttaccacatctccttaaaacctgcaaaataccttcgttagatatgttacaac 9411549  T
Q  286 aattaatcaaatcaagcagttgcaaattggggaaaatcgaagaaaatattttgatggtttcatctcttaa 355  Q
    |     ||||||||||||| ||||||||||||||||| |||| |||  |||||||| ||| |||||||||    
T  9411550 atccgctcaaatcaagcagctgcaaattggggaaaatggaagcaaaccttttgatgtttttatctcttaa 9411619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 126 - 263
Target Start/End: Original strand, 19632474 - 19632611
Alignment:
Q  126 tcatcgtcaactcttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcacttttaaactacgagctaagttca 225  Q
    ||||| |||||  ||||||  ||||||| ||||||||| || ||||||| |  |||||| | ||||||||| || ||| || |||  |||| ||||||||    
T  19632474 tcatcatcaacctttgtatacgacaagtccaacacctctagcttgggaactagaaagtttattccaagtaggttaactattgaacatcgagttaagttca 19632573  T
Q  226 actgtctaatcttacaacatcttaaaacttcacaaata 263  Q
    | ||  | |||||||||||||||||||||| |||||||    
T  19632574 aatgcgttatcttacaacatcttaaaacttgacaaata 19632611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 98 - 268
Target Start/End: Complemental strand, 6585329 - 6585156
Alignment:
Q  98 acaactctttgaaatcacactgagtgcttcatcgtcaactcttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagc 197  Q
    |||||||||||| ||||||  ||||| |||||| |||||  |||||| |||||||||||| |||||||  | || || |  |||||| | ||||||||||    
T  6585329 acaactctttgagatcacatagagtgtttcatcatcaacctttgtatctgacaagttcaatacctccaactgggtaactaaaaagtttattccaagtagc 6585230  T
Q  198 ttcacttttaaactacgagctaagttcaactgtctaatcttacaacat---cttaaaacttcacaaataccttc 268  Q
    |||||| || |||  | ||  |||||||| || ||||| ||| |||||   |||||||| | ||||||||||||    
T  6585229 ttcactcttgaacacccagtaaagttcaaatgcctaatattaaaacatctccttaaaacatgacaaataccttc 6585156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 119 - 202
Target Start/End: Complemental strand, 6596999 - 6596916
Alignment:
Q  119 gagtgcttcatcgtcaactcttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcac 202  Q
    ||||| |||||| |||||  |||||  ||||||||||||||||||||| | ||||||||||||||| | | ||||| |||||||    
T  6596999 gagtgtttcatcatcaacatttgtacttgacaagttcaacacctccagctggggaatttcaaagtttatttcaagtcgcttcac 6596916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 98 - 184
Target Start/End: Original strand, 14802343 - 14802429
Alignment:
Q  98 acaactctttgaaatcacactgagtgcttcatcgtcaactcttgtatgtgacaagttcaacacctccagtttgggaatttcaaagtt 184  Q
    |||| ||||||||||||||  ||||| |||||| |||||  |||||| |||||| |||||||| ||||  ||||||| |||||||||    
T  14802343 acaattctttgaaatcacatagagtgtttcatcatcaacctttgtatttgacaaattcaacacttccatcttgggaacttcaaagtt 14802429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 293 - 394
Target Start/End: Original strand, 6432363 - 6432464
Alignment:
Q  293 caaatcaagcagttgcaaattggggaaaatcgaagaaaatattttgatggtttcatctcttaagcgtgaattgtgagtcaaacagagtgactttaattga 392  Q
    |||||||||  ||||||||||||||||||| |||| ||| ||| ||||  ||||||  ||||| | ||||||||||  |||| |||| |||||||| |||    
T  6432363 caaatcaagatgttgcaaattggggaaaatggaagcaaacattatgatcctttcattccttaaccatgaattgtgacccaaatagagagactttaactga 6432462  T
Q  393 gg 394  Q
    ||    
T  6432463 gg 6432464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 89 - 268
Target Start/End: Complemental strand, 7994283 - 7994101
Alignment:
Q  89 aagtccatgacaactctttgaaatcacactgagtgcttcatcgtcaactcttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagt 188  Q
    |||||||  |||| ||||||| ||||||   |||| ||| || | ||| ||||||| ||||| |||||||||||| || || |||| | ||||||||| |    
T  7994283 aagtccagaacaattctttgagatcacatatagtgtttcgtcattaacccttgtatttgacatgttcaacacctctagcttcggaactacaaagttcatt 7994184  T
Q  189 ccaagtagcttcacttttaaactacgagctaagttcaactgtctaatcttacaacat---cttaaaacttcacaaataccttc 268  Q
    || |||||||||||| ||  || |   |||| |||||| || || ||||||||||||   |||||||| | ||||||||||||    
T  7994183 cctagtagcttcactcttgtacaatcggctatgttcaaatgcctgatcttacaacatttccttaaaacgtaacaaataccttc 7994101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 521 - 597
Target Start/End: Original strand, 9411788 - 9411864
Alignment:
Q  521 ttcaaaataattggtaaaggataaagaccttaatgttagtgcctcaccgagagcagaagcaataccaacgttggtta 597  Q
    |||||||||||| |||||||| |||||||| || ||| ||  ||||| |||||||||| |||| ||||| |||||||    
T  9411788 ttcaaaataattagtaaaggacaaagacctcaaggttggtctctcacagagagcagaaacaatgccaactttggtta 9411864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 203
Target Start/End: Original strand, 9410751 - 9410814
Alignment:
Q  140 tgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcact 203  Q
    |||||||||||| |||||||||||||  ||||||  ||||||||||| ||||| || |||||||    
T  9410751 tgtatgtgacaaattcaacacctccaacttgggagcttcaaagttcaatccaattaacttcact 9410814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 849 - 895
Target Start/End: Original strand, 6417087 - 6417133
Alignment:
Q  849 atgtgggaacatgtgagagatgtcaaagttgtaatgttttgggagaa 895  Q
    ||||||||||| |||||||| |||||||||||| | |||||||||||    
T  6417087 atgtgggaacaagtgagagaggtcaaagttgtattcttttgggagaa 6417133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 853 - 895
Target Start/End: Original strand, 28935337 - 28935379
Alignment:
Q  853 gggaacatgtgagagatgtcaaagttgtaatgttttgggagaa 895  Q
    ||||||||||||| || || |||||||||||||||||||||||    
T  28935337 gggaacatgtgagtgaggttaaagttgtaatgttttgggagaa 28935379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 46
Target Start/End: Original strand, 6415880 - 6415921
Alignment:
Q  5 ctctcttagttgtgtgcaattttctaccacatgcttcactcc 46  Q
    |||||||||||||||||| || ||||||||||| ||||||||    
T  6415880 ctctcttagttgtgtgcagttctctaccacatgtttcactcc 6415921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 176
Target Start/End: Complemental strand, 10579807 - 10579750
Alignment:
Q  119 gagtgcttcatcgtcaactcttgtatgtgacaagttcaacacctccagtttgggaatt 176  Q
    ||||| || ||| |||||| |||||| ||||||||||||||||||||| | |||||||    
T  10579807 gagtgttttatcatcaacttttgtatatgacaagttcaacacctccagctggggaatt 10579750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 855 - 900
Target Start/End: Original strand, 14809700 - 14809745
Alignment:
Q  855 gaacatgtgagagatgtcaaagttgtaatgttttgggagaattctt 900  Q
    ||||| |||||||| | |||||||||||||||||||||||| ||||    
T  14809700 gaacaagtgagagaggccaaagttgtaatgttttgggagaaatctt 14809745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 123; Significance: 1e-62; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 123; E-Value: 1e-62
Query Start/End: Original strand, 97 - 394
Target Start/End: Complemental strand, 18315366 - 18315066
Alignment:
Q  97 gacaactctttgaaatcacactgagtgcttcatcgtcaactcttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtag 196  Q
    ||||||||||||| ||||||  |||||||||||| |||||| |||||||||||||||||||||||||||||||||||| || |||||||| |||| ||||    
T  18315366 gacaactctttgagatcacatagagtgcttcatcatcaacttttgtatgtgacaagttcaacacctccagtttgggaactttaaagttcattccacgtag 18315267  T
Q  197 cttcacttttaaactacgagctaagttcaactgtctaatct---tacaacatcttaaaacttcacaaataccttcgtctgatatgccactgcaattaatc 293  Q
    ||||| | || ||  ||||||||||||||||||||||||||    ||||| || |||||||| |||||||||||| || | ||||  |  ||| |   ||    
T  18315266 cttcattcttgaatcacgagctaagttcaactgtctaatctcagaacaacttcgtaaaacttgacaaataccttcttcaggtatgttatcgcagtagctc 18315167  T
Q  294 aaatcaagcagttgcaaattggggaaaatcgaagaaaatattttgatggtttcatctcttaagcgtgaattgtgagtcaaacagagtgactttaattgag 393  Q
    ||||||||||  ||||||||||||||||| |||||||||||||||||| |||| |||||||| | |||||||  ||| |||| ||| |||||||||||||    
T  18315166 aaatcaagcaactgcaaattggggaaaatggaagaaaatattttgatgctttcctctcttaaccatgaattgcaagtaaaacggagagactttaattgag 18315067  T
Q  394 g 394  Q
    |    
T  18315066 g 18315066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 97 - 322
Target Start/End: Complemental strand, 17636494 - 17636262
Alignment:
Q  97 gacaactctttgaaatcacactgagtgcttcatcgtcaactcttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttca----gtccaa 192  Q
    ||||||||||||| ||||||   | ||||||||||||||||| ||| |||||||||||||||||||||| |||||||| |||||||||||     || |     
T  17636494 gacaactctttgagatcacatacaatgcttcatcgtcaactcctgtttgtgacaagttcaacacctccaatttgggaacttcaaagttcattcgatcgat 17636395  T
Q  193 gtagcttcacttttaaactacgagctaagttcaactgtctaatcttacaacat---cttaaaacttcacaaataccttcgtctgatatgccactgcaatt 289  Q
    |||| |||||| || |||  ||  |||||||||| || ||||| ||| |||||   |||||||||| |||||||||||  ||||||||   | ||||||     
T  17636394 gtagtttcactcttgaacatcggcctaagttcaaatgcctaatattagaacatccccttaaaacttgacaaatacctttctctgatattttattgcaatc 17636295  T
Q  290 aatcaaatcaagcagttgcaaattggggaaaat 322  Q
        ||||||||||| |||||||||||||||||    
T  17636294 tcgtaaatcaagcagctgcaaattggggaaaat 17636262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 98 - 341
Target Start/End: Original strand, 32151308 - 32151551
Alignment:
Q  98 acaactctttgaaatcacactgagtgcttcatcgtcaactcttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagc 197  Q
    |||||||||||| ||||||  ||||| |||||| ||||  ||||||  ||||||||| ||||||||||| |||| || ||| ||||||| |||| | |||    
T  32151308 acaactctttgagatcacatagagtgtttcatcatcaaaccttgtacatgacaagtttaacacctccagattggaaacttcgaagttcattccacgcagc 32151407  T
Q  198 ttcacttttaaactacgagctaagttcaactgtctaatcttacaacatcttaaaacttcacaaataccttcgtctgatatgccactgcaattaatcaaat 297  Q
    ||||| | |||||  |  |  || ||||| || ||||||| | | ||||||||||||| |||||| ||||| || ||||||  |  ||||    ||||||    
T  32151408 ttcacatgtaaacagccggtgaaattcaaatgcctaatctcagagcatcttaaaacttgacaaattccttcttcagatatgttatggcaacacctcaaat 32151507  T
Q  298 caagcagttgcaaattggggaaaatcgaagaaaatattttgatg 341  Q
    |||||||||||||||| |||||||| |||| ||| |||||||||    
T  32151508 caagcagttgcaaattagggaaaatggaagcaaacattttgatg 32151551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 132 - 245
Target Start/End: Complemental strand, 28246353 - 28246240
Alignment:
Q  132 tcaactcttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcacttttaaactacgagctaagttcaactgtc 231  Q
    ||||||||||||  |||||||| |||||||||||||||||||| ||||||||||| |  | ||||||||| | || ||| ||||| ||| ||||| ||||    
T  28246353 tcaactcttgtaaatgacaagtccaacacctccagtttgggaacttcaaagttcaatgtatgtagcttcagtcttgaacaacgagttaaattcaaatgtc 28246254  T
Q  232 taatcttacaacat 245  Q
    |||| |||||||||    
T  28246253 taatgttacaacat 28246240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 97 - 191
Target Start/End: Original strand, 21235564 - 21235658
Alignment:
Q  97 gacaactctttgaaatcacactgagtgcttcatcgtcaactcttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtcca 191  Q
    |||| ||||||||||||| |  |||| |||| |  ||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||| ||||    
T  21235564 gacagctctttgaaatcaaatagagttcttcgttatcaactcctgtatatgacaagttcaacacctccagtttgggaacttcaaagttcactcca 21235658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 98 - 186
Target Start/End: Complemental strand, 17628106 - 17628018
Alignment:
Q  98 acaactctttgaaatcacactgagtgcttcatcgtcaactcttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttca 186  Q
    |||| ||||||| ||||||| |||||||| ||| |||||||| ||||||||||||||||||||||||| ||| | || || ||||||||    
T  17628106 acaattctttgagatcacacggagtgctttatcatcaactctagtatgtgacaagttcaacacctccaatttagaaagtttaaagttca 17628018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 98 - 186
Target Start/End: Original strand, 27922515 - 27922603
Alignment:
Q  98 acaactctttgaaatcacactgagtgcttcatcgtcaactcttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttca 186  Q
    |||||||||||| |||| |   ||||||||||| |||||  |||||| |||||||||||||||||||| |||||||| |||||||||||    
T  27922515 acaactctttgagatcatataaagtgcttcatcatcaacatttgtatatgacaagttcaacacctccaatttgggaacttcaaagttca 27922603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 294 - 425
Target Start/End: Complemental strand, 17627952 - 17627821
Alignment:
Q  294 aaatcaagcagttgcaaattggggaaaatcgaagaaaatattttgatggtttcatctcttaagcgtgaattgtgagtcaaacagagtgactttaattgag 393  Q
    ||||||||||||||||||||||||||||| |||| ||| ||||||||| ||||||| | ||    |||||||  || |||| |||| || ||||||||||    
T  17627952 aaatcaagcagttgcaaattggggaaaatggaagcaaacattttgatgttttcatcgcatagcaatgaattgaaagccaaatagagagattttaattgag 17627853  T
Q  394 gtcttacaacaaggtccatgaaagaattagaa 425  Q
    | |||||||| |  ||||  ||||||||||||    
T  17627852 ggcttacaacgaaatccaccaaagaattagaa 17627821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 520 - 679
Target Start/End: Complemental strand, 18315033 - 18314874
Alignment:
Q  520 gttcaaaataattggtaaaggataaagaccttaatgttagtgcctcaccgagagcagaagcaataccaacgttggttacttcaggacaccgaaatatgat 619  Q
    ||||||| ||| ||| || |||||||||||| || ||| ||  ||||| ||||||| ||||||||||  ||||||||| || | ||||   |||||||||    
T  18315033 gttcaaagtaactggaaatggataaagacctcaaagttggtctctcacggagagcaaaagcaatacccgcgttggttatttgatgacagtaaaatatgat 18314934  T
Q  620 ggcttcttcaagacacttacaactcttgaacaagtgaaaaagaaattgatcgttgatgta 679  Q
     |  ||||| |||  ||||||  ||||||||||||| |||||  ||||||||||||||||    
T  18314933 tgtctcttcgagaagcttacagttcttgaacaagtggaaaagcgattgatcgttgatgta 18314874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 770 - 819
Target Start/End: Complemental strand, 18314778 - 18314729
Alignment:
Q  770 ggggtaactacggtcgagttcttcgagaaaagggaaacaatcggcaatga 819  Q
    |||||||||| |||||||||||||||| |||||||||||||| |||||||    
T  18314778 ggggtaactaaggtcgagttcttcgagcaaagggaaacaatcagcaatga 18314729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 525 - 673
Target Start/End: Complemental strand, 17636047 - 17635899
Alignment:
Q  525 aaataattggtaaaggataaagaccttaatgttagtgcctcaccgagagcagaagcaataccaacgttggttacttcaggacaccgaaatatgatggctt 624  Q
    |||||| ||||||| ||||||||||| |||||| ||  ||||   |||||||| ||||||||  | ||||||| ||   ||||    |||||||||||||    
T  17636047 aaataactggtaaatgataaagacctcaatgtttgtctctcaagaagagcagaggcaataccggcattggttatttgttgacaattcaatatgatggctt 17635948  T
Q  625 cttcaagacacttacaactcttgaacaagtgaaaaagaaattgatcgtt 673  Q
    |||||||| |||| ||| ||||||||||||  | |||| ||||||||||    
T  17635947 cttcaagaaacttccaattcttgaacaagttgagaagagattgatcgtt 17635899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 855 - 895
Target Start/End: Original strand, 32151969 - 32152009
Alignment:
Q  855 gaacatgtgagagatgtcaaagttgtaatgttttgggagaa 895  Q
    ||||| |||||||| ||||||||||||||||||||||||||    
T  32151969 gaacaagtgagagaggtcaaagttgtaatgttttgggagaa 32152009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 44736446 - 44736490
Alignment:
Q  2 gatctctcttagttgtgtgcaattttctaccacatgcttcactcc 46  Q
    |||||||||||||||||| ||||||||||| ||||| ||||||||    
T  44736446 gatctctcttagttgtgtacaattttctacaacatgtttcactcc 44736490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 849 - 908
Target Start/End: Complemental strand, 17642996 - 17642937
Alignment:
Q  849 atgtgggaacatgtgagagatgtcaaagttgtaatgttttgggagaattcttttaaccca 908  Q
    ||||||||||| |||||||| |||||||||||||| || ||||||||  ||| |||||||    
T  17642996 atgtgggaacaagtgagagaggtcaaagttgtaatattctgggagaaagcttgtaaccca 17642937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 781 - 819
Target Start/End: Original strand, 32151895 - 32151933
Alignment:
Q  781 ggtcgagttcttcgagaaaagggaaacaatcggcaatga 819  Q
    |||| ||||||||||| ||||||||||||||||||||||    
T  32151895 ggtcaagttcttcgagcaaagggaaacaatcggcaatga 32151933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 174
Target Start/End: Complemental strand, 17643653 - 17643612
Alignment:
Q  133 caactcttgtatgtgacaagttcaacacctccagtttgggaa 174  Q
    |||||||||| ||||||||||||||| |||||| ||||||||    
T  17643653 caactcttgtttgtgacaagttcaacgcctccaatttgggaa 17643612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 86; Significance: 1e-40; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 3 - 430
Target Start/End: Complemental strand, 51113968 - 51113541
Alignment:
Q  3 atctctcttagttgtgtgcaattttctaccacatgcttcactccnnnnnnngtaacacgatcgcagtttaacagcaacaggcgcataagtccatgacaac 102  Q
    ||||||||||||| |||||| |||||||||||||||||||||||       || ||| | |  || |||  ||| |||||  ||| ||| |||  |||||    
T  51113968 atctctcttagttttgtgcatttttctaccacatgcttcactcccttctctgtgacatggtaacaatttttcagtaacagttgcaaaagcccacaacaac 51113869  T
Q  103 tctttgaaatcacactgagtgcttcatcgtcaactcttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcac 202  Q
    |||| || ||||||  ||||| |||||| |||||  |||||| ||||||||  ||||||||||||||||||  ||||||||||| ||||||||||||||     
T  51113868 tcttcgagatcacatagagtgtttcatcatcaaccattgtatttgacaagtctaacacctccagtttgggagcttcaaagttcattccaagtagcttcag 51113769  T
Q  203 ttttaaactacgagctaagttcaactgtctaatcttacaacatc---ttaaaacttcacaaataccttcgtctgatatgccactgcaattaatcaaatca 299  Q
    |||| |||    |||||| ||||| || ||||| ||||||||||   ||||||||| |||||||||||||   |||||  ||  ||||| | | ||||||    
T  51113768 ttttgaacagtaagctaatttcaaatgcctaattttacaacatctctttaaaacttgacaaataccttcg---gatatctcatagcaatgagttaaatca 51113672  T
Q  300 agcagttgcaaattggggaaaatcgaagaaaatattttgatggtttcatctcttaagcgtgaattgtgagtcaaacagagtgactttaattgaggtctta 399  Q
    || || |||| |||||||||||| |||| ||  ||| ||||| | ||||||||||| | || |||||||  |||   ||| ||||||||||| |||||||    
T  51113671 agaagctgcagattggggaaaatggaagcaatcattatgatgctctcatctcttaaccatggattgtgatccaactggagagactttaattgcggtctta 51113572  T
Q  400 caacaaggtccatgaaagaattagaagtctc 430  Q
    ||||||   |||| |||||||||||| ||||    
T  51113571 caacaaaacccatcaaagaattagaattctc 51113541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 139 - 355
Target Start/End: Complemental strand, 13470783 - 13470567
Alignment:
Q  139 ttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcacttttaaactacgagctaagttcaactgtctaatctt 238  Q
    |||||| ||||||||||||||||||||| |||||||   ||||||||| |||||||||||||||||||  || |   ||||||||||| || ||||||||    
T  13470783 ttgtatttgacaagttcaacacctccagattgggaacaacaaagttcattccaagtagcttcacttttttacaataggctaagttcaaatgcctaatctt 13470684  T
Q  239 acaacat---cttaaaacttcacaaataccttcgtctgatatgccactgcaattaatcaaatcaagcagttgcaaattggggaaaatcgaagaaaatatt 335  Q
    |||||||   |||||||||| ||||||||||   | ||||| |  | |||||  | ||||||||||||| ||||||||||||||| | |||| ||| |||    
T  13470683 acaacatatccttaaaacttgacaaatacct---tttgataagagattgcaacaattcaaatcaagcagctgcaaattggggaaattggaagcaaacatt 13470587  T
Q  336 ttgatggtttcatctcttaa 355  Q
     |||||  |||||| |||||    
T  13470586 atgatgccttcatcacttaa 13470567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 125 - 247
Target Start/End: Complemental strand, 51120958 - 51120836
Alignment:
Q  125 ttcatcgtcaactcttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcacttttaaactacgagctaagttc 224  Q
    |||||| |||||||||||||| ||||||||||||||||||| |||| ||| ||||||||||| |||| | || |||||| || ||| ||  |  ||||||    
T  51120958 ttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagttcattccatgcagtttcactcttgaacaaccggtgaagttc 51120859  T
Q  225 aactgtctaatcttacaacatct 247  Q
    || |||||||| |||||||||||    
T  51120858 aagtgtctaatgttacaacatct 51120836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 98 - 355
Target Start/End: Complemental strand, 51764532 - 51764275
Alignment:
Q  98 acaactctttgaaatcacactgagtgcttcatcgtcaactcttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagc 197  Q
    |||| ||||||| ||| ||  ||||| || ||| |||||| |||||  ||||||||  ||||||||||| || |||| | ||||||||| ||||||||||    
T  51764532 acaattctttgagatcgcatagagtgttttatcatcaacttttgtaaatgacaagtctaacacctccagcttcggaactgcaaagttcattccaagtagc 51764433  T
Q  198 ttcacttttaaac-tacgagctaagttcaactgtctaatcttacaacatct---taaaacttcacaaataccttcgtctgatatgccactgcaattaatc 293  Q
    |||||| || ||| | || | || |||||| || ||||||||| |||||||   |||||||||||| | |||||     ||||||| | |||||  | |     
T  51764432 ttcactcttgaacattcg-gataggttcaaatgcctaatcttagaacatctccttaaaacttcacagacaccttta---gatatgcgattgcaagaatta 51764337  T
Q  294 aaatcaagcagttgcaaattggggaaaatcgaagaaaatattttgatggtttcatctcttaa 355  Q
    ||||||||||| ||||||||||||||||| |||| ||| ||| ||||| ||||||| |||||    
T  51764336 aaatcaagcagctgcaaattggggaaaatggaagcaaacattatgatgctttcatcacttaa 51764275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 292 - 421
Target Start/End: Complemental strand, 514623 - 514494
Alignment:
Q  292 tcaaatcaagcagttgcaaattggggaaaatcgaagaaaatattttgatggtttcatctcttaagcgtgaattgtgagtcaaacagagtgactttaattg 391  Q
    |||||||||  || |||||||| |||||||| |||| ||| ||| | | | ||||||||||||||| ||||||||||| |||| |||| || ||||||||    
T  514623 tcaaatcaattagctgcaaattcgggaaaattgaagcaaacattataaggttttcatctcttaagcatgaattgtgagccaaatagagagattttaattg 514524  T
Q  392 aggtcttacaacaaggtccatgaaagaatt 421  Q
    |||  | ||||||| |||||  ||||||||    
T  514523 agggttcacaacaaagtccaacaaagaatt 514494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 131 - 186
Target Start/End: Original strand, 1657291 - 1657346
Alignment:
Q  131 gtcaactcttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttca 186  Q
    |||||||||||||  |||||||| |||||||||||||||||||| |||||||||||    
T  1657291 gtcaactcttgtaaatgacaagtccaacacctccagtttgggaacttcaaagttca 1657346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 848 - 889
Target Start/End: Complemental strand, 51763452 - 51763411
Alignment:
Q  848 aatgtgggaacatgtgagagatgtcaaagttgtaatgttttg 889  Q
    |||||||||||| ||||||||||||||||||||||| |||||    
T  51763452 aatgtgggaacaagtgagagatgtcaaagttgtaatcttttg 51763411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 171
Target Start/End: Complemental strand, 27005830 - 27005791
Alignment:
Q  132 tcaactcttgtatgtgacaagttcaacacctccagtttgg 171  Q
    |||| ||||||||||||||||||||| |||||||||||||    
T  27005830 tcaattcttgtatgtgacaagttcaagacctccagtttgg 27005791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 761 - 819
Target Start/End: Complemental strand, 51763548 - 51763490
Alignment:
Q  761 gcaatatgaggggtaactacggtcgagttcttcgagaaaagggaaacaatcggcaatga 819  Q
    |||||||| |||||||||  |||||||||||||||| || |||||||| || |||||||    
T  51763548 gcaatatgtggggtaactgaggtcgagttcttcgagcaatgggaaacattccgcaatga 51763490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 66; Significance: 1e-28; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 120 - 425
Target Start/End: Complemental strand, 32785842 - 32785537
Alignment:
Q  120 agtgcttcatcgtcaactcttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcacttttaaactacgagcta 219  Q
    ||||||||||| |||| ||||||||||||||||||||||||||| |||||||||  || |||||||| || | |  |||  | | || ||    |  | |    
T  32785842 agtgcttcatcatcaattcttgtatgtgacaagttcaacacctctagtttgggagctttaaagttcattcgacggtgctcgattcttgaaaagtggtcca 32785743  T
Q  220 agttcaactgtctaatcttacaacatcttaaaacttcacaaataccttcgtctgatatgccactgcaattaatcaaatcaagcagttgcaaattggggaa 319  Q
    | ||||| |||||||||||| |||||||||||| || |||||||||||| || ||||||  |  |||||   |||||||||| |||||||||||||  ||    
T  32785742 aattcaaatgtctaatcttagaacatcttaaaaattgacaaataccttcttcagatatgttatagcaatagctcaaatcaagtagttgcaaattggaaaa 32785643  T
Q  320 aatcgaagaaaatattttgatggtttcatctcttaagcgtgaattgtgagtcaaacagagtgactttaattgaggtcttacaacaaggtccatgaaagaa 419  Q
    ||| |||||||| ||  ||||| ||||||||||||| |   ||||| ||| ||||  |||  |||||||||||||  |||||||||  ||||| ||||||    
T  32785642 aatagaagaaaacatcctgatgctttcatctcttaaccaataattgcgagccaaatggagaaactttaattgagggattacaacaaaatccatcaaagaa 32785543  T
Q  420 ttagaa 425  Q
    ||||||    
T  32785542 ttagaa 32785537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 98 - 348
Target Start/End: Complemental strand, 1037756 - 1037503
Alignment:
Q  98 acaactctttgaaatcacactgagtgcttcatcgtcaactcttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagc 197  Q
    |||| ||||||| |||| |  ||||| |||||| ||||| | ||||||||||||||| |||||||| | ||  |||| || |||||| | || ||||||     
T  1037756 acaattctttgagatcatatagagtgtttcatcatcaacacatgtatgtgacaagttaaacacctctaattcaggaactttaaagtttattctaagtagt 1037657  T
Q  198 ttcacttttaaactacgag-ctaagttcaactgtctaatcttacaacatct---taaaacttcacaaataccttcgtctgatatgccactgcaattaatc 293  Q
    |||||| || || ||  || |||| ||||| ||||||| ||||||||||||   ||||||||||||||||||||| || ||||||  |  |||     ||    
T  1037656 ttcactcttgaa-tagtaggctaaattcaaatgtctaaccttacaacatctccttaaaacttcacaaataccttcttcagatatgttatggcaggagctc 1037558  T
Q  294 aaatcaagcagttgcaaattggggaaaatcgaagaaaatattttgatggtttcat 348  Q
    |||||||| | |||||||||||||||||| |||| ||| | | ||||| ||||||    
T  1037557 aaatcaagaaattgcaaattggggaaaatggaagcaaacaatatgatgttttcat 1037503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 2 - 184
Target Start/End: Complemental strand, 45245273 - 45245091
Alignment:
Q  2 gatctctcttagttgtgtgcaattttctaccacatgcttcactccnnnnnnngtaacacgatcgcagtttaacagcaacaggcgcataagtccatgacaa 101  Q
    ||||||| | |||||||||||||||||||||||||| ||||||||       || ||| |||  || |||  ||  || ||  ||| ||| ||| |||||    
T  45245273 gatctctgtaagttgtgtgcaattttctaccacatgtttcactcccttatctgtgacatgataacattttttcaataatagttgcaaaagcccacgacaa 45245174  T
Q  102 ctctttgaaatcacactgagtgcttcatcgtcaactcttgtatgtgacaagttcaacacctccagtttgggaatttcaaagtt 184  Q
    |||||||| ||||||  ||||| |||||| |||||  |||| | |||||| ||||||||||| ||||| |||| |||||||||    
T  45245173 ctctttgagatcacatggagtgtttcatcatcaaccattgtctctgacaaattcaacacctcaagttttggaacttcaaagtt 45245091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 60; Significance: 4e-25; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 120 - 350
Target Start/End: Complemental strand, 41889624 - 41889391
Alignment:
Q  120 agtgcttcatcgtcaactcttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcacttttaaactacgagcta 219  Q
    |||| |||||| |||||| |||||| ||| |||||||||||||||| |||||||| || |||||||| | |||||||||||||| || |||  |  | ||    
T  41889624 agtgtttcatcatcaacttttgtatatgataagttcaacacctccaatttgggaactttaaagttcatttcaagtagcttcactattgaacatccggata 41889525  T
Q  220 agttcaactgtctaatcttacaacat---cttaaaacttcacaaataccttcgtctgatatgccactgcaattaatcaaatcaagcagttgcaaattggg 316  Q
    ||||||| | |||||| |||||||||   |||||||||| |  ||||||||| ||  |||||| ||  |||||  |||||||||| || |||||||| ||    
T  41889524 agttcaaatatctaatgttacaacatatccttaaaacttgagtaataccttcatcaaatatgcgacaacaattgctcaaatcaagtagctgcaaattagg 41889425  T
Q  317 gaaaatcgaagaaaatattttgatggtttcatct 350  Q
    |||||| |||| ||| ||| |||||  |||||||    
T  41889424 gaaaatggaagcaaacattatgatgtcttcatct 41889391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 89 - 183
Target Start/End: Complemental strand, 41901636 - 41901542
Alignment:
Q  89 aagtccatgacaactctttgaaatcacactgagtgcttcatcgtcaactcttgtatgtgacaagttcaacacctccagtttgggaatttcaaagt 183  Q
    |||||||  |||||||||||| |||| |   ||||||||||| |||||| |||||| ||||||||||||||||||||||||||||| ||||||||    
T  41901636 aagtccacaacaactctttgagatcatataaagtgcttcatcatcaacttttgtatatgacaagttcaacacctccagtttgggaacttcaaagt 41901542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 98 - 315
Target Start/End: Original strand, 32267482 - 32267699
Alignment:
Q  98 acaactctttgaaatcacactgagtgcttcatcgtcaactcttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagc 197  Q
    |||||||||||| |||| |   ||||||||||| |||||| |||| |||||||||||||| ||||||| |||||||| ||||||||||| | |   |||     
T  32267482 acaactctttgagatcatataaagtgcttcatcatcaactattgtttgtgacaagttcaatacctccaatttgggaacttcaaagttcatttc---tagt 32267578  T
Q  198 ttcacttttaaactacgagctaagttcaactgtctaatcttacaacat---cttaaaacttcacaaataccttcgtctgatatgccactgcaattaatca 294  Q
    |||||| || |||   | | ||||||||| |||||||| |||||||||   ||||||| || |   |||||||| || ||||||| ||  |||||  |||    
T  32267579 ttcactgttgaacactgggataagttcaaatgtctaatgttacaacatatccttaaaaattgaacgataccttcttcagatatgcgacaacaattgctca 32267678  T
Q  295 aatcaagcagttgcaaattgg 315  Q
    |||||||||| ||||||||||    
T  32267679 aatcaagcagctgcaaattgg 32267699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 139 - 247
Target Start/End: Complemental strand, 20478133 - 20478025
Alignment:
Q  139 ttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcacttttaaactacgagctaagttcaactgtctaatctt 238  Q
    |||||| ||||||||||||||||||||| | ||||||| ||| ||| | ||||||||||||| || ||  ||  | |||||||||||| || || | |||    
T  20478133 ttgtatatgacaagttcaacacctccagctggggaattacaacgtttattccaagtagcttcgctcttcgacatccagctaagttcaaatgccttaactt 20478034  T
Q  239 acaacatct 247  Q
    |||||||||    
T  20478033 acaacatct 20478025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 126 - 184
Target Start/End: Complemental strand, 38267620 - 38267562
Alignment:
Q  126 tcatcgtcaactcttgtatgtgacaagttcaacacctccagtttgggaatttcaaagtt 184  Q
    ||||| |||||||||||||||| ||||| ||||||||| || ||||||| |||||||||    
T  38267620 tcatcatcaactcttgtatgtgtcaagtccaacacctcaaggttgggaacttcaaagtt 38267562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 218 - 327
Target Start/End: Complemental strand, 41901510 - 41901398
Alignment:
Q  218 taagttcaactgtctaatcttacaacat---cttaaaacttcacaaataccttcgtctgatatgccactgcaattaatcaaatcaagcagttgcaaattg 314  Q
    ||||||||| |||||||| ||||||||    |||||||||| |  ||||||||| ||  |||||| ||  |||||  ||||||||||||| |||||||||    
T  41901510 taagttcaaatgtctaatgttacaacacatccttaaaacttgaacaataccttcttcaaatatgcgacaacaattgctcaaatcaagcagctgcaaattg 41901411  T
Q  315 gggaaaatcgaag 327  Q
    |||||||| ||||    
T  41901410 gggaaaatggaag 41901398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 2e-24; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 141 - 320
Target Start/End: Original strand, 10614643 - 10614822
Alignment:
Q  141 gtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcacttttaaactacgagctaagttcaactgtctaatcttac 240  Q
    |||| ||||||||||||||||||||| |||||||   ||| ||||| |||||||||||||||||||  || |   ||||||||||| || ||||||||||    
T  10614643 gtatttgacaagttcaacacctccagattgggaacaacaacgttcattccaagtagcttcacttttttacaataggctaagttcaaatgcctaatcttac 10614742  T
Q  241 aacat---cttaaaacttcacaaataccttcgtctgatatgccactgcaattaatcaaatcaagcagttgcaaattggggaaa 320  Q
    |||||   |||||||||| |||||||||||| |   ||| |  | |||||  | |||||||||||||||||||||||||||||    
T  10614743 aacatatccttaaaacttgacaaataccttcat---ataagagattgcaacgattcaaatcaagcagttgcaaattggggaaa 10614822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 146 - 394
Target Start/End: Complemental strand, 15092195 - 15091947
Alignment:
Q  146 tgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcacttttaaactacgagctaagttcaactgtctaatcttacaacat 245  Q
    |||||| |||||||||||||| | ||||| | ||||||||| |||| |||| |||||  ||||||  | || ||||||||| ||| ||| |||| |||||    
T  15092195 tgacaaattcaacacctccagctcgggaactgcaaagttcattccatgtagtttcacacttaaacatccagttaagttcaaatgtttaagcttataacat 15092096  T
Q  246 ---cttaaaacttcacaaataccttcgtctgatatgccactgcaattaatcaaatcaagcagttgcaaattggggaaaatcgaagaaaatattttgatgg 342  Q
       |||||||||| | |||||||||     ||||||  |  ||||| |  ||||||||| || |  || ||||||||||| |||| || |||| |||||     
T  15092095 ttccttaaaacttgagaaataccttga---gatatgttatagcaatgacccaaatcaagtagctctaagttggggaaaatggaagcaagtattctgatga 15091999  T
Q  343 tttcatctcttaagcgtgaattgtgagtcaaacagagtgactttaattgagg 394  Q
    ||||||| ||||| ||  ||||||||| |||| |||| ||||||||||||||    
T  15091998 tttcatcacttaaccggtaattgtgagccaaatagagagactttaattgagg 15091947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 849 - 895
Target Start/End: Original strand, 10615708 - 10615754
Alignment:
Q  849 atgtgggaacatgtgagagatgtcaaagttgtaatgttttgggagaa 895  Q
    ||||||||||| |||||||| |||||||||||||| |||||||||||    
T  10615708 atgtgggaacaagtgagagaggtcaaagttgtaatcttttgggagaa 10615754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 103 - 394
Target Start/End: Complemental strand, 19468586 - 19468295
Alignment:
Q  103 tctttgaaatcacactgagtgcttcatcgtcaactcttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcac 202  Q
    ||||||| ||||||   |||| |||||| |||||  |||||| |||||| |||||||||||||| ||||||| | ||||||||| ||||||||| |||||    
T  19468586 tctttgagatcacataaagtgtttcatcatcaacctttgtatctgacaacttcaacacctccagcttgggaactacaaagttcactccaagtagattcac 19468487  T
Q  203 ttttaaactacgagctaagttcaactgtctaatcttacaaca---tcttaaaacttcacaaataccttcgtctgatatgccactgcaattaatcaaatca 299  Q
    | || |||   | |||||||| || || ||||| ||| ||||    |||||||||| |||||| |||   || ||||||    ||||     ||||||||    
T  19468486 tcttgaacagtgggctaagtttaaatgcctaatattagaacacctccttaaaacttgacaaatgcct---tccgatatgtggttgcatgagttcaaatca 19468390  T
Q  300 agcagttgcaaattggggaaaatcgaagaaaatattttgatggtttcatctcttaagcgtgaattgtgagtcaaacagagtgactttaattgagg 394  Q
    ||||| ||||||||||| ||||| |||| ||| ||| ||||| ||||||| ||||| | |||||| | || |||  ||||  |||||||||||||    
T  19468389 agcagctgcaaattgggaaaaatggaagcaaacattatgatgttttcatcgcttaaccatgaattctcagccaagtagagatactttaattgagg 19468295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 296 - 430
Target Start/End: Original strand, 9581276 - 9581410
Alignment:
Q  296 atcaagcagttgcaaattggggaaaatcgaagaaaatattttgatggtttcatctcttaagcgtgaattgtgagtcaaacagagtgactttaattgaggt 395  Q
    ||||||||| ||||||||||||||||| |||| ||| ||| ||||| ||| ||||||||| | |  |||||||  ||||   || ||||||||||||||     
T  9581276 atcaagcagctgcaaattggggaaaattgaagcaaacattatgatgtttttatctcttaaacattgattgtgacccaaatcaagagactttaattgaggg 9581375  T
Q  396 cttacaacaaggtccatgaaagaattagaagtctc 430  Q
    |||||| |||  ||| ||||||| |||||| ||||    
T  9581376 cttacaccaatatccttgaaagacttagaattctc 9581410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 296 - 405
Target Start/End: Original strand, 9586844 - 9586953
Alignment:
Q  296 atcaagcagttgcaaattggggaaaatcgaagaaaatattttgatggtttcatctcttaagcgtgaattgtgagtcaaacagagtgactttaattgaggt 395  Q
    ||||||||| ||||||||||||||||| |||| ||| ||| ||||| ||| ||||||||| | |  |||| ||  ||||   || ||||| |||||||||    
T  9586844 atcaagcagctgcaaattggggaaaattgaagcaaacattatgatgtttttatctcttaaccattgattgcgacccaaatcaagagacttcaattgaggt 9586943  T
Q  396 cttacaacaa 405  Q
    ||||||||||    
T  9586944 cttacaacaa 9586953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 12 - 46
Target Start/End: Original strand, 9580990 - 9581024
Alignment:
Q  12 agttgtgtgcaattttctaccacatgcttcactcc 46  Q
    |||||||||||||||||||||||| ||||||||||    
T  9580990 agttgtgtgcaattttctaccacacgcttcactcc 9581024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 2 - 44
Target Start/End: Original strand, 43634090 - 43634132
Alignment:
Q  2 gatctctcttagttgtgtgcaattttctaccacatgcttcact 44  Q
    |||||||||||||||| |||||||||||| ||| |||||||||    
T  43634090 gatctctcttagttgtctgcaattttctaacacgtgcttcact 43634132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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