View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18984_high_2 (Length: 565)
Name: NF18984_high_2
Description: NF18984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18984_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 466; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 20 - 549
Target Start/End: Original strand, 20014500 - 20015029
Alignment:
| Q |
20 |
cagtgcatacagttcacgcatttaagccagcccaattcttgaaagcaataagagcttccatttttctgacattctttttccttaacctggccactttgag |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20014500 |
cagtgcatacagttcacgcatttaagccagcccaattcttgaaagcaataagagcttccatttttctgacattctttttccttaacctggccactttgag |
20014599 |
T |
|
| Q |
120 |
ctttttatgtgtctccatgaacgcttgcttgtatctccacttatcaacaaatattttcatctctttagatttctccacaacttgcatcacagcatcaaag |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20014600 |
ctttttatgtgtctccatgaacgcttgcttgtatctccacttatcaacaaatattttcatctctttagatttctccacaacttgcatcacagcatcaaag |
20014699 |
T |
|
| Q |
220 |
aaacctcccttgaccatagcatacaggaatgcatcaaccagattctggtcaaatttgatccccttcggcccattccctgctaactttcgcttaacctcat |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |||||||||| ||||||||| | |
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| T |
20014700 |
aaacctcccttgaccatagcatacaggaatgcatcaaccagattctggtcaaatttgatcccctttggcccatcccccgctaactttctcttaacctcgt |
20014799 |
T |
|
| Q |
320 |
tccacaacatcattacatcaaaatatttttctgccgaaacatatccgttaatcagggacaagtaagtctgatcatttggctcgaattgcaggaatgtcat |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || ||||| ||||| ||||||||||||||||| |
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| T |
20014800 |
tccacaacatcattacatcaaaatatttttctgccgaaacatatccgttaatcagggacaagtatgtttggtcattcggctcaaattgcaggaatgtcat |
20014899 |
T |
|
| Q |
420 |
ccttctgaaagtccgtcttgcatcttctagcctcccagctttacaaaaagcgtggattatagaattccaatcatgagtaccaacttcaatacgaggatcc |
519 |
Q |
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|||||| ||||| | |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
20014900 |
ccttctaaaagttctccttgcatcttctagcctcccggctttacaaaaagcgtggattatagaattccaatcatgagtacccacttcaatacgaggatcc |
20014999 |
T |
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| Q |
520 |
tcaaccacctcatctaagaaagctgccatc |
549 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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| T |
20015000 |
tcaaccacctcatctaagaaagctgccatc |
20015029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 26 - 549
Target Start/End: Complemental strand, 19702109 - 19701586
Alignment:
| Q |
26 |
atacagttcacgcatttaagccagcccaattcttgaaagcaataagagcttccatttttctgacattctttttccttaacctggccactttgagcttttt |
125 |
Q |
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|||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19702109 |
atacagttcatgcatttaagccagcccaattcttaaaagcaataagcgcttccatttttctgacattctttttccttaacctggccactttgagcttttt |
19702010 |
T |
|
| Q |
126 |
atgtgtctccatgaacgcttgcttgtatctccacttatcaacaaatattttcatctctttagatttctccacaacttgcatcacagcatcaaagaaacct |
225 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19702009 |
atgtgtctccatgaacgcttgcttgtatctccacttatcaacaaatattttcatctctttagatttctccacaacttgcatcacagcatcaaagaaacct |
19701910 |
T |
|
| Q |
226 |
cccttgaccatagcatacaggaatgcatcaaccagattctggtcaaatttgatccccttcggcccattccctgctaactttcgcttaacctcattccaca |
325 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
19701909 |
cccttgaccatagcatacaagaatgcatcaaccagattctggtcaaatttgatccccttcggcccatcccctgctaactttcgcttaacctcattccaca |
19701810 |
T |
|
| Q |
326 |
acatcattacatcaaaatatttttctgccgaaacatatccgttaatcagggacaagtaagtctgatcatttggctcgaattgcaggaatgtcatccttct |
425 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || ||||| ||||| ||||||||||||||||||||||| |
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| T |
19701809 |
acatcattacatcaaaatatttttctgccgaaacatatccgttaatcagggacaagtatgtttggtcattcggctcaaattgcaggaatgtcatccttct |
19701710 |
T |
|
| Q |
426 |
gaaagtccgtcttgcatcttctagcctcccagctttacaaaaagcgtggattatagaattccaatcatgagtaccaacttcaatacgaggatcctcaacc |
525 |
Q |
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||||| | |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
19701709 |
aaaagttctccttgcatcttctagcctcccggctttacaaaaagcgtggattatagaattccaatcatgagtacccacttcaatacgaggatcctcaacc |
19701610 |
T |
|
| Q |
526 |
acctcatctaagaaagctgccatc |
549 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
19701609 |
acctcatctaagaaagctgccatc |
19701586 |
T |
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Back To:
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